Query psy2690
Match_columns 125
No_of_seqs 114 out of 541
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:43:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10591 SPARC_Ca_bdg: Secrete 100.0 1.9E-30 4.2E-35 182.4 -0.3 105 1-108 1-113 (113)
2 cd00252 SPARC_EC SPARC_EC; ext 99.9 3.4E-27 7.3E-32 166.7 8.7 109 3-117 1-113 (116)
3 KOG4578|consensus 99.9 2.5E-24 5.4E-29 173.9 7.8 120 1-123 291-410 (421)
4 KOG3555|consensus 99.9 6.2E-22 1.3E-26 160.8 8.6 111 2-117 199-316 (434)
5 KOG4004|consensus 99.7 1.1E-18 2.4E-23 133.5 2.7 113 1-117 133-256 (259)
6 PF13499 EF-hand_7: EF-hand do 99.5 9.2E-14 2E-18 87.1 4.8 62 48-109 2-66 (66)
7 KOG0044|consensus 99.4 1.1E-13 2.5E-18 105.4 5.0 78 44-121 98-185 (193)
8 cd05022 S-100A13 S-100A13: S-1 99.2 2.4E-11 5.1E-16 82.2 5.2 63 47-110 9-74 (89)
9 cd05027 S-100B S-100B: S-100B 99.1 6.4E-11 1.4E-15 79.7 4.9 63 47-110 9-78 (88)
10 cd05026 S-100Z S-100Z: S-100Z 99.1 9.6E-11 2.1E-15 79.2 5.2 63 48-110 12-80 (93)
11 COG5126 FRQ1 Ca2+-binding prot 99.1 1.2E-10 2.6E-15 86.5 5.3 67 44-111 90-156 (160)
12 KOG0034|consensus 99.1 3.6E-10 7.8E-15 85.8 7.3 69 45-113 103-177 (187)
13 cd00052 EH Eps15 homology doma 99.1 2E-10 4.4E-15 71.3 4.9 60 49-111 2-61 (67)
14 cd05031 S-100A10_like S-100A10 99.0 5.8E-10 1.3E-14 75.1 5.4 65 46-110 8-78 (94)
15 cd05025 S-100A1 S-100A1: S-100 99.0 7.2E-10 1.6E-14 74.3 5.8 65 46-110 9-79 (92)
16 cd00051 EFh EF-hand, calcium b 99.0 6.9E-10 1.5E-14 65.8 5.1 61 48-109 2-62 (63)
17 KOG0027|consensus 99.0 6.4E-10 1.4E-14 80.5 5.5 66 45-111 84-149 (151)
18 cd05029 S-100A6 S-100A6: S-100 99.0 4.7E-10 1E-14 75.4 4.3 64 47-110 11-78 (88)
19 smart00027 EH Eps15 homology d 99.0 7.6E-10 1.7E-14 74.7 5.2 64 44-110 8-71 (96)
20 cd00213 S-100 S-100: S-100 dom 99.0 1.5E-09 3.2E-14 71.8 5.6 66 46-111 8-79 (88)
21 cd05023 S-100A11 S-100A11: S-1 98.9 1.7E-09 3.6E-14 72.9 5.2 63 48-110 11-79 (89)
22 KOG0027|consensus 98.9 1.4E-09 3.1E-14 78.7 4.9 69 45-114 7-75 (151)
23 PTZ00184 calmodulin; Provision 98.9 4.2E-09 9E-14 73.7 5.6 65 46-111 84-148 (149)
24 PTZ00183 centrin; Provisional 98.9 5.2E-09 1.1E-13 74.3 6.0 67 45-112 89-155 (158)
25 PF13833 EF-hand_8: EF-hand do 98.8 6.4E-09 1.4E-13 62.8 4.1 51 59-110 1-52 (54)
26 cd05030 calgranulins Calgranul 98.8 1.9E-08 4.1E-13 67.3 5.9 64 47-110 9-78 (88)
27 KOG0041|consensus 98.7 1.3E-08 2.8E-13 78.4 4.6 64 48-112 101-164 (244)
28 PTZ00183 centrin; Provisional 98.6 6.2E-08 1.3E-12 68.7 5.7 65 46-110 53-117 (158)
29 PTZ00184 calmodulin; Provision 98.6 1E-07 2.2E-12 66.6 5.2 67 45-111 46-112 (149)
30 KOG0377|consensus 98.6 1.4E-07 2.9E-12 80.0 6.1 79 46-124 547-628 (631)
31 PF00036 EF-hand_1: EF hand; 98.5 6.8E-08 1.5E-12 52.5 1.8 27 48-74 2-28 (29)
32 cd05024 S-100A10 S-100A10: A s 98.5 3.8E-07 8.3E-12 62.1 5.3 63 47-110 9-75 (91)
33 PRK12309 transaldolase/EF-hand 98.4 1.1E-06 2.4E-11 73.4 8.1 56 43-112 331-386 (391)
34 COG5126 FRQ1 Ca2+-binding prot 98.2 1.8E-06 3.9E-11 64.2 4.9 66 46-113 20-85 (160)
35 PF12763 EF-hand_4: Cytoskelet 98.2 3.6E-06 7.7E-11 58.4 5.1 66 42-111 6-71 (104)
36 PF00036 EF-hand_1: EF hand; 98.2 1.3E-06 2.8E-11 47.4 2.3 26 85-110 2-27 (29)
37 KOG0037|consensus 98.2 3.9E-06 8.4E-11 65.1 5.3 65 46-111 122-188 (221)
38 KOG0038|consensus 98.1 8.2E-06 1.8E-10 60.5 6.6 67 45-111 107-177 (189)
39 KOG0044|consensus 98.1 4E-06 8.8E-11 64.0 4.9 66 44-110 62-127 (193)
40 KOG0036|consensus 98.1 2.9E-06 6.2E-11 71.2 3.5 68 45-113 13-81 (463)
41 PF13202 EF-hand_5: EF hand; P 98.1 3E-06 6.5E-11 44.4 2.3 22 86-107 2-23 (25)
42 KOG4223|consensus 98.0 4.4E-06 9.5E-11 68.0 3.9 60 51-111 168-228 (325)
43 KOG0028|consensus 98.0 1.3E-05 2.7E-10 59.9 5.9 65 46-111 106-170 (172)
44 PF13202 EF-hand_5: EF hand; P 98.0 2.6E-06 5.6E-11 44.7 1.7 25 48-72 1-25 (25)
45 PLN02964 phosphatidylserine de 98.0 9.8E-06 2.1E-10 71.4 5.5 65 47-112 180-244 (644)
46 KOG0036|consensus 98.0 1.1E-05 2.4E-10 67.8 5.2 68 45-113 81-148 (463)
47 PF13405 EF-hand_6: EF-hand do 97.9 4.4E-06 9.6E-11 45.4 1.5 26 48-73 2-27 (31)
48 KOG4251|consensus 97.9 1.7E-05 3.7E-10 63.3 4.9 68 44-111 99-168 (362)
49 PF14788 EF-hand_10: EF hand; 97.8 3.1E-05 6.8E-10 47.4 4.2 47 62-109 1-47 (51)
50 KOG4065|consensus 97.7 9.9E-05 2.1E-09 52.8 5.3 59 50-108 71-142 (144)
51 KOG0031|consensus 97.7 6.1E-05 1.3E-09 56.0 4.3 67 46-112 32-130 (171)
52 PLN02964 phosphatidylserine de 97.6 6.8E-05 1.5E-09 66.2 4.5 63 45-111 142-207 (644)
53 PF13405 EF-hand_6: EF-hand do 97.6 5.8E-05 1.3E-09 40.8 2.3 26 85-110 2-27 (31)
54 KOG4223|consensus 97.5 0.00029 6.2E-09 57.6 6.8 66 45-111 76-141 (325)
55 KOG3866|consensus 97.5 0.00012 2.5E-09 60.1 4.4 61 51-111 249-324 (442)
56 KOG0028|consensus 97.5 0.00017 3.7E-09 53.9 4.6 66 44-110 31-96 (172)
57 PF14658 EF-hand_9: EF-hand do 97.5 0.00026 5.6E-09 45.5 4.4 61 51-111 3-64 (66)
58 KOG0046|consensus 97.4 0.0002 4.4E-09 61.9 4.8 70 42-112 15-87 (627)
59 KOG0034|consensus 97.0 0.0014 3.1E-08 49.8 5.2 63 46-113 33-97 (187)
60 KOG0037|consensus 97.0 0.0012 2.6E-08 51.4 4.8 27 47-73 58-84 (221)
61 KOG0040|consensus 97.0 0.0018 3.8E-08 61.9 6.3 67 48-114 2255-2327(2399)
62 smart00054 EFh EF-hand, calciu 97.0 0.00057 1.2E-08 33.9 1.9 25 49-73 3-27 (29)
63 smart00054 EFh EF-hand, calciu 96.8 0.0013 2.8E-08 32.5 2.5 26 85-110 2-27 (29)
64 PF13833 EF-hand_8: EF-hand do 96.7 0.0016 3.4E-08 38.8 2.8 29 46-74 25-53 (54)
65 KOG2643|consensus 96.7 0.0031 6.8E-08 53.6 5.2 62 49-110 236-313 (489)
66 KOG0031|consensus 96.6 0.0047 1E-07 46.1 5.3 65 45-110 100-164 (171)
67 KOG2562|consensus 96.6 0.0066 1.4E-07 51.9 6.3 64 45-108 350-421 (493)
68 KOG0030|consensus 96.3 0.0055 1.2E-07 45.0 3.9 65 45-110 10-76 (152)
69 PF13499 EF-hand_7: EF-hand do 96.3 0.0034 7.3E-08 38.6 2.5 29 85-113 2-30 (66)
70 KOG1955|consensus 96.3 0.007 1.5E-07 52.5 5.0 69 40-111 225-293 (737)
71 KOG0030|consensus 96.2 0.011 2.4E-07 43.4 5.2 58 50-109 92-149 (152)
72 KOG2643|consensus 95.8 0.0054 1.2E-07 52.2 1.9 56 52-110 205-260 (489)
73 cd05024 S-100A10 S-100A10: A s 95.4 0.039 8.5E-07 37.5 4.7 33 43-75 45-77 (91)
74 PF14788 EF-hand_10: EF hand; 95.3 0.018 3.9E-07 35.2 2.5 32 44-75 19-50 (51)
75 PF09069 EF-hand_3: EF-hand; 95.2 0.096 2.1E-06 35.5 6.2 66 45-113 2-77 (90)
76 KOG1029|consensus 95.1 0.022 4.7E-07 51.8 3.4 59 49-110 198-256 (1118)
77 cd00052 EH Eps15 homology doma 94.9 0.024 5.2E-07 34.4 2.4 25 87-111 3-27 (67)
78 cd05026 S-100Z S-100Z: S-100Z 94.8 0.055 1.2E-06 36.2 4.2 31 45-75 52-82 (93)
79 KOG0377|consensus 94.5 0.062 1.3E-06 46.3 4.7 64 46-109 464-573 (631)
80 cd05022 S-100A13 S-100A13: S-1 94.4 0.045 9.8E-07 36.7 2.9 30 46-75 47-76 (89)
81 KOG2562|consensus 94.2 0.14 3E-06 44.0 6.2 60 46-109 278-341 (493)
82 smart00027 EH Eps15 homology d 93.8 0.064 1.4E-06 35.7 2.8 27 85-111 12-38 (96)
83 PF09279 EF-hand_like: Phospho 93.8 0.051 1.1E-06 35.2 2.3 67 48-115 2-73 (83)
84 cd05029 S-100A6 S-100A6: S-100 93.7 0.077 1.7E-06 35.3 3.0 31 45-75 50-80 (88)
85 cd00051 EFh EF-hand, calcium b 93.6 0.077 1.7E-06 30.3 2.6 28 85-112 2-29 (63)
86 KOG4251|consensus 93.5 0.11 2.4E-06 41.9 4.1 54 53-107 288-341 (362)
87 cd05023 S-100A11 S-100A11: S-1 93.4 0.11 2.3E-06 34.7 3.4 31 45-75 51-81 (89)
88 cd00252 SPARC_EC SPARC_EC; ext 93.2 0.077 1.7E-06 37.3 2.4 28 45-72 79-106 (116)
89 KOG4666|consensus 92.8 0.11 2.3E-06 43.2 3.1 67 43-111 293-359 (412)
90 KOG0169|consensus 92.8 0.24 5.2E-06 44.7 5.5 67 46-113 136-202 (746)
91 cd05030 calgranulins Calgranul 92.1 0.19 4E-06 33.2 3.1 31 45-75 50-80 (88)
92 cd05025 S-100A1 S-100A1: S-100 91.0 0.26 5.6E-06 32.4 2.9 31 45-75 51-81 (92)
93 PF00404 Dockerin_1: Dockerin 90.8 0.38 8.3E-06 24.1 2.7 19 56-74 1-19 (21)
94 cd05027 S-100B S-100B: S-100B 90.5 0.33 7.1E-06 32.3 3.1 31 45-75 50-80 (88)
95 cd05031 S-100A10_like S-100A10 89.8 0.39 8.5E-06 31.8 3.0 30 46-75 51-80 (94)
96 cd00213 S-100 S-100: S-100 dom 89.4 0.42 9.1E-06 31.0 2.9 28 84-111 9-38 (88)
97 PRK12309 transaldolase/EF-hand 89.0 0.54 1.2E-05 39.6 3.9 25 82-106 333-357 (391)
98 PF12763 EF-hand_4: Cytoskelet 88.7 0.43 9.2E-06 33.0 2.6 32 45-76 42-73 (104)
99 KOG1707|consensus 88.4 1.6 3.4E-05 38.8 6.5 39 84-122 316-354 (625)
100 KOG4666|consensus 83.2 1.1 2.5E-05 37.3 2.9 68 44-111 257-324 (412)
101 KOG4065|consensus 81.8 2.7 5.9E-05 30.2 4.0 28 43-70 114-141 (144)
102 KOG4347|consensus 81.2 2 4.4E-05 38.4 3.8 57 47-105 556-612 (671)
103 KOG0751|consensus 80.8 2.7 5.9E-05 37.0 4.4 58 52-112 80-137 (694)
104 KOG0040|consensus 80.0 1.9 4E-05 42.5 3.4 25 87-111 2257-2281(2399)
105 cd07313 terB_like_2 tellurium 77.0 2.9 6.3E-05 27.7 2.8 53 59-111 12-65 (104)
106 PF10591 SPARC_Ca_bdg: Secrete 76.3 1.6 3.6E-05 30.3 1.5 24 48-71 90-113 (113)
107 PF05042 Caleosin: Caleosin re 73.8 11 0.00025 28.4 5.6 69 46-114 7-127 (174)
108 KOG2243|consensus 73.4 5.6 0.00012 39.5 4.5 59 51-111 4062-4120(5019)
109 PF05042 Caleosin: Caleosin re 72.5 6.9 0.00015 29.6 4.1 67 44-110 94-165 (174)
110 KOG0038|consensus 72.5 7 0.00015 29.3 4.1 65 44-111 72-136 (189)
111 PF06226 DUF1007: Protein of u 70.1 3.7 8.1E-05 31.4 2.3 23 54-76 58-80 (212)
112 KOG0998|consensus 69.5 1.1 2.4E-05 41.2 -0.9 66 43-111 280-345 (847)
113 PF05099 TerB: Tellurite resis 69.2 1.4 3E-05 30.7 -0.3 54 59-112 36-90 (140)
114 KOG1029|consensus 67.9 9.8 0.00021 35.3 4.7 63 44-110 14-76 (1118)
115 KOG0751|consensus 67.1 7.5 0.00016 34.3 3.7 62 46-107 36-98 (694)
116 KOG0042|consensus 65.8 10 0.00022 33.9 4.3 67 44-111 591-657 (680)
117 KOG0041|consensus 64.3 6.4 0.00014 30.9 2.5 29 84-112 100-128 (244)
118 TIGR03573 WbuX N-acetyl sugar 61.8 15 0.00033 30.0 4.5 44 59-109 299-342 (343)
119 KOG0917|consensus 60.5 39 0.00084 27.7 6.4 67 7-74 48-115 (338)
120 KOG1707|consensus 59.4 7.8 0.00017 34.6 2.5 59 46-107 315-373 (625)
121 PF08976 DUF1880: Domain of un 55.6 12 0.00026 26.6 2.5 35 81-115 5-39 (118)
122 PF09107 SelB-wing_3: Elongati 54.5 16 0.00035 21.9 2.6 32 59-96 7-38 (50)
123 PF08726 EFhand_Ca_insen: Ca2+ 54.1 3.2 6.9E-05 26.7 -0.6 58 46-108 6-66 (69)
124 cd07316 terB_like_DjlA N-termi 52.9 42 0.00091 21.9 4.8 17 60-76 13-29 (106)
125 PF12174 RST: RCD1-SRO-TAF4 (R 45.7 28 0.0006 22.3 2.8 26 85-110 27-52 (70)
126 KOG3866|consensus 45.1 11 0.00024 31.5 1.1 50 64-113 225-274 (442)
127 cd00086 homeodomain Homeodomai 42.8 45 0.00099 19.1 3.4 41 43-91 10-50 (59)
128 PLN02222 phosphoinositide phos 41.5 66 0.0014 28.7 5.4 70 44-115 23-94 (581)
129 PF09068 EF-hand_2: EF hand; 41.1 93 0.002 22.0 5.3 62 48-109 43-123 (127)
130 PF09068 EF-hand_2: EF hand; 41.0 16 0.00035 25.9 1.3 31 44-74 95-125 (127)
131 PRK05849 hypothetical protein; 40.4 89 0.0019 28.9 6.2 59 59-125 471-532 (783)
132 TIGR03296 M6dom_TIGR03296 M6 f 40.1 14 0.0003 29.5 0.9 16 52-67 92-107 (286)
133 PF05517 p25-alpha: p25-alpha 39.7 67 0.0014 23.3 4.5 60 51-110 7-68 (154)
134 PF05901 Excalibur: Excalibur 39.1 16 0.00034 20.4 0.8 9 54-62 26-34 (37)
135 KOG4578|consensus 39.0 19 0.0004 30.3 1.5 28 48-75 372-399 (421)
136 PF08158 NUC130_3NT: NUC130/3N 38.5 45 0.00097 20.2 2.8 24 2-25 6-29 (52)
137 PF07261 DnaB_2: Replication i 37.4 44 0.00095 20.6 2.8 45 52-96 2-46 (77)
138 KOG1954|consensus 36.8 37 0.00081 29.3 3.0 55 49-107 447-501 (532)
139 cd07177 terB_like tellurium re 35.9 69 0.0015 20.2 3.7 18 60-77 13-30 (104)
140 TIGR02675 tape_meas_nterm tape 33.6 48 0.001 21.2 2.6 16 59-74 27-42 (75)
141 KOG0998|consensus 33.5 21 0.00046 33.0 1.2 63 46-111 11-73 (847)
142 PLN02952 phosphoinositide phos 32.8 81 0.0018 28.3 4.6 55 59-114 13-68 (599)
143 KOG4004|consensus 32.2 35 0.00076 26.8 2.0 31 43-73 219-249 (259)
144 KOG3355|consensus 31.2 46 0.001 25.3 2.4 56 64-119 96-151 (177)
145 PF00427 PBS_linker_poly: Phyc 31.2 84 0.0018 22.6 3.7 43 63-111 5-56 (131)
146 PF01023 S_100: S-100/ICaBP ty 31.2 39 0.00084 19.5 1.6 27 48-74 8-36 (44)
147 PLN02952 phosphoinositide phos 30.8 1E+02 0.0022 27.7 4.8 65 46-111 38-110 (599)
148 PLN02228 Phosphoinositide phos 30.4 1.6E+02 0.0035 26.3 6.0 67 46-114 24-95 (567)
149 PLN02230 phosphoinositide phos 29.9 1.4E+02 0.003 26.9 5.5 66 46-112 29-103 (598)
150 PF09912 DUF2141: Uncharacteri 29.5 21 0.00045 24.6 0.3 15 53-67 59-73 (112)
151 PF00046 Homeobox: Homeobox do 27.5 98 0.0021 17.8 3.1 39 44-90 11-49 (57)
152 cd02977 ArsC_family Arsenate R 27.1 1.8E+02 0.0039 19.0 4.7 62 52-116 26-90 (105)
153 TIGR01446 DnaD_dom DnaD and ph 26.9 74 0.0016 19.5 2.6 49 52-102 2-50 (73)
154 KOG4347|consensus 26.4 68 0.0015 29.1 3.0 31 81-111 553-583 (671)
155 cd07176 terB tellurite resista 26.1 19 0.00041 23.6 -0.4 9 96-104 90-98 (111)
156 PF12486 DUF3702: ImpA domain 25.6 57 0.0012 23.9 2.1 32 46-77 69-100 (148)
157 KOG2419|consensus 25.4 79 0.0017 29.1 3.2 63 48-110 439-532 (975)
158 PF09851 SHOCT: Short C-termin 24.6 88 0.0019 16.6 2.2 16 60-75 14-29 (31)
159 cd07311 terB_like_1 tellurium 24.2 1E+02 0.0022 22.5 3.2 48 44-91 20-68 (150)
160 PF08671 SinI: Anti-repressor 23.5 1.3E+02 0.0029 16.1 3.3 26 66-91 3-28 (30)
161 cd08330 CARD_ASC_NALP1 Caspase 22.4 92 0.002 20.2 2.4 49 58-112 25-73 (82)
162 KOG4403|consensus 22.3 98 0.0021 27.1 3.1 56 46-106 68-124 (575)
163 PF07492 Trehalase_Ca-bi: Neut 22.0 35 0.00076 18.6 0.3 18 86-103 2-19 (30)
164 PRK09430 djlA Dna-J like membr 21.8 2.1E+02 0.0046 22.6 4.8 50 58-111 67-120 (267)
165 KOG1954|consensus 21.7 96 0.0021 26.9 2.9 31 45-75 476-506 (532)
166 PF08044 DUF1707: Domain of un 20.8 50 0.0011 19.9 0.8 13 96-108 20-32 (53)
167 cd06403 PB1_Par6 The PB1 domai 20.7 44 0.00095 22.2 0.6 58 51-112 10-69 (80)
168 PF12133 Sars6: Open reading f 20.2 31 0.00067 21.4 -0.2 31 40-70 29-59 (62)
No 1
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=99.95 E-value=1.9e-30 Score=182.35 Aligned_cols=105 Identities=32% Similarity=0.624 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--------CcCCCCCCchhhHHHchhcccCCCCCCcccHHHHHHHH
Q psy2690 1 MKGCPGHKKREFLKGLMEYFMNTMLSQKNTTTSA--------TEEGTFSTGDEQVATWNFGTLDLDKNKVLEQEEWKNFR 72 (125)
Q Consensus 1 ~~~C~~~~~~~f~~rL~~wf~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~ 72 (125)
|++|++.++++|+.||++||+++|++........ .........+..++.|+|.+||+|+||+|+++||+.++
T Consensus 1 ~~~C~~~e~~~F~~RL~dWf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~ 80 (113)
T PF10591_consen 1 MTPCTEQELSQFPRRLLDWFKNLMEQSKSRDELSDHYIELLKRDESSSYSECKRVVHWKFCQLDRNKDGVLDRSELKPLR 80 (113)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSS-HHHHHHHHHHTGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhhhhhhhhhhHhhhcCCCCCccCHHHHHHHH
Confidence 7899999999999999999999997543321100 01122456688999999999999999999999999998
Q ss_pred HHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHh
Q psy2690 73 NLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNC 108 (125)
Q Consensus 73 ~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~c 108 (125)
..|. ++++|++.|+++||+|+||+||+.||..|
T Consensus 81 ~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 81 RPLM---PPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp STTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred HHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 8763 78999999999999999999999999998
No 2
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.94 E-value=3.4e-27 Score=166.73 Aligned_cols=109 Identities=22% Similarity=0.398 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCCCC---CCCcCC-CCCCchhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhh
Q psy2690 3 GCPGHKKREFLKGLMEYFMNTMLSQKNTTT---SATEEG-TFSTGDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQ 78 (125)
Q Consensus 3 ~C~~~~~~~f~~rL~~wf~~~~~~~~~~~~---~~~~~~-~~~~~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~ 78 (125)
.|++.++++|+.||++||+++|++.+.+.. ...... .....+...|.|+|..||+|+||+||.+||..+. +
T Consensus 1 ~C~~~el~~~~~R~~dW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--- 75 (116)
T cd00252 1 ECTDQELADFPLRLRDWFKNVHEDLKERDELEKHKLRLKKSLYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--- 75 (116)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhchhhhhhhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c---
Confidence 599999999999999999999986664321 111111 1234678889999999999999999999999986 3
Q ss_pred hhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCCccC
Q psy2690 79 KQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTNRAN 117 (125)
Q Consensus 79 ~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~~~~ 117 (125)
...+.|+..||+.||+|+||.||++||+.|| ......+
T Consensus 76 ~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl-~~~~~~~ 113 (116)
T cd00252 76 DPNEHCIKPFFESCDLDKDGSISLDEWCYCF-IKEDDLC 113 (116)
T ss_pred cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hChhhcc
Confidence 2578999999999999999999999999999 5544443
No 3
>KOG4578|consensus
Probab=99.90 E-value=2.5e-24 Score=173.92 Aligned_cols=120 Identities=35% Similarity=0.727 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCCCchhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhh
Q psy2690 1 MKGCPGHKKREFLKGLMEYFMNTMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQ 80 (125)
Q Consensus 1 ~~~C~~~~~~~f~~rL~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~ 80 (125)
|++|++.+|++|+.+|++.|...|. +++.+++.... ....++.++.|.|.+||+|+|+.|+++|++.|.+.+.+...
T Consensus 291 l~gC~e~KKteFL~~Ll~aL~Tdmv-~s~~~as~gr~--~e~DeeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~ 367 (421)
T KOG4578|consen 291 LNGCPEKKKTEFLTSLLDALKTDMV-MSGINASNGRK--SEPDEERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK 367 (421)
T ss_pred cCCCCcchhhHHHHHHHHHHhhhhh-hhcccccCCcc--cCCChhheeeeeeeeecccccCccchhhcchHHHHHHhhcc
Confidence 6899999999999999999999998 55443331111 12225678999999999999999999999999999987778
Q ss_pred hHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCCccCCCCCCC
Q psy2690 81 LRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTNRANRSTPDE 123 (125)
Q Consensus 81 ~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~~~~~~~~~~ 123 (125)
+++|+++|+++||+|+|.+||++||..||+..+++.++.++|.
T Consensus 368 ~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~~~a~~k~~ 410 (421)
T KOG4578|consen 368 PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKERGPAKRKDQ 410 (421)
T ss_pred HHHHhhhcchhcccCCCceecHHHHhhhhccccccCcccCccc
Confidence 8999999999999999999999999999999999888887763
No 4
>KOG3555|consensus
Probab=99.86 E-value=6.2e-22 Score=160.83 Aligned_cols=111 Identities=21% Similarity=0.354 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhcCCC--CCCCc----CCC-CCCchhhHHHchhcccCCCCCCcccHHHHHHHHHH
Q psy2690 2 KGCPGHKKREFLKGLMEYFMNTMLSQKNTT--TSATE----EGT-FSTGDEQVATWNFGTLDLDKNKVLEQEEWKNFRNL 74 (125)
Q Consensus 2 ~~C~~~~~~~f~~rL~~wf~~~~~~~~~~~--~~~~~----~~~-~~~~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~ 74 (125)
..|++.++.++.+||++||+.+|++.++.. ++.+. .++ +...++..|.|||++||.|.||.||.+||..+-.
T Consensus 199 ~~Ct~qeL~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l- 277 (434)
T KOG3555|consen 199 YACTDQELRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL- 277 (434)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc-
Confidence 369999999999999999999998766542 11222 122 4557999999999999999999999999999832
Q ss_pred HHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCCccC
Q psy2690 75 ISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTNRAN 117 (125)
Q Consensus 75 l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~~~~ 117 (125)
.+.|.|++.||..||+.+||.||-.||+.||....+|.+
T Consensus 278 ----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~pc~ 316 (434)
T KOG3555|consen 278 ----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDPPCQ 316 (434)
T ss_pred ----cCchhHHHHHHhhhcccccCccccchhhhhhccCCCccc
Confidence 368999999999999999999999999999999886643
No 5
>KOG4004|consensus
Probab=99.73 E-value=1.1e-18 Score=133.53 Aligned_cols=113 Identities=22% Similarity=0.461 Sum_probs=89.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcCCC--------CCCchh--hHHHchhcccCC-CCCCcccHHHHH
Q psy2690 1 MKGCPGHKKREFLKGLMEYFMNTMLSQKNTTTSATEEGT--------FSTGDE--QVATWNFGTLDL-DKNKVLEQEEWK 69 (125)
Q Consensus 1 ~~~C~~~~~~~f~~rL~~wf~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~l~w~F~~lD~-n~dG~Ld~~EL~ 69 (125)
|+.|.++++.+|+.||.+||+++|.....++ +.+.+.+ .+...+ -.+.|.|.+||. ..||+||..||.
T Consensus 133 i~~c~d~~ltefp~rm~dwl~~vl~~l~~r~-el~~~~~~e~~~ea~~~d~~k~i~pv~wqf~qld~~p~d~~~sh~el~ 211 (259)
T KOG4004|consen 133 IPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ELTEKHENEKRLEAGDHDFEKYIFPVHWQFGQLDQHPIDGYLSHTELA 211 (259)
T ss_pred CCchhHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccccccceeeeeeeeeccccCCCccccccccccc
Confidence 6789999999999999999999986443321 1111100 011111 236899999999 899999999999
Q ss_pred HHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCCccC
Q psy2690 70 NFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTNRAN 117 (125)
Q Consensus 70 ~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~~~~ 117 (125)
.++..+- +++.|+..||..||+|+||-|+++||-.||+......+
T Consensus 212 pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~gikq~di~ 256 (259)
T KOG4004|consen 212 PLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDID 256 (259)
T ss_pred cccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhcccCcchhccc
Confidence 9988774 78999999999999999999999999999998776554
No 6
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.46 E-value=9.2e-14 Score=87.10 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=53.7
Q ss_pred HHchhcccCCCCCCcccHHHHHHHHHHHHhh---hhhHHHHhHhhhhhcCCCCCccCHHHHHHhh
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNFRNLISQQ---KQLRRCGKKLPRHCDANNDKKISLSEWLNCL 109 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~---~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl 109 (125)
|+++|..+|.|+||+|+.+||..+++.+... ...+..+..+++.+|.|+||.||++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 6889999999999999999999999987421 2345678888999999999999999999764
No 7
>KOG0044|consensus
Probab=99.44 E-value=1.1e-13 Score=105.38 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=68.1
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhh----------hHHHHhHhhhhhcCCCCCccCHHHHHHhhccCC
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQ----------LRRCGKKLPRHCDANNDKKISLSEWLNCLNVNT 113 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~----------~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~ 113 (125)
..+.|.|.|..||.||||+|++.|+..+++.++.... ++.++..+|+++|.|+||+||++||......++
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADP 177 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCH
Confidence 5688999999999999999999999999999876433 578999999999999999999999999888777
Q ss_pred CccCCCCC
Q psy2690 114 NRANRSTP 121 (125)
Q Consensus 114 ~~~~~~~~ 121 (125)
.-.+.+.+
T Consensus 178 ~i~~~l~~ 185 (193)
T KOG0044|consen 178 SILRALEQ 185 (193)
T ss_pred HHHHHhhh
Confidence 66555544
No 8
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.21 E-value=2.4e-11 Score=82.17 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=54.0
Q ss_pred HHHchhcccCC-CCCCcccHHHHHHHHHH-HHhhhhhH-HHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 47 VATWNFGTLDL-DKNKVLEQEEWKNFRNL-ISQQKQLR-RCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 47 ~l~w~F~~lD~-n~dG~Ld~~EL~~~~~~-l~~~~~~e-~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
.|.-.|..||+ +++|+|+..||+.+++. +-.. .+. .-++.+|+..|+|+||+|+|+||...++
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~-ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHL-LKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh-ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 46778999999 99999999999999998 6322 223 5699999999999999999999988765
No 9
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.14 E-value=6.4e-11 Score=79.67 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=53.5
Q ss_pred HHHchhcccC-CCCCC-cccHHHHHHHHHH-----HHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 47 VATWNFGTLD-LDKNK-VLEQEEWKNFRNL-----ISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 47 ~l~w~F~~lD-~n~dG-~Ld~~EL~~~~~~-----l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
.|.-.|..|| +|||| +|+..||+.+++. +. ...++..++.+++..|.|+||+|+|+||+.++.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3677899998 79999 5999999999998 43 223556699999999999999999999987764
No 10
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.13 E-value=9.6e-11 Score=79.24 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=51.4
Q ss_pred HHchhcccC-CCCCC-cccHHHHHHHHHHHH-h---hhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 48 ATWNFGTLD-LDKNK-VLEQEEWKNFRNLIS-Q---QKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 48 l~w~F~~lD-~n~dG-~Ld~~EL~~~~~~l~-~---~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
+..+|..|| .|||| +|+.+||+.++.... . ....+..++.+++.+|.|+||.|+|+||+..+.
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 566699999 79999 599999999997632 1 112456799999999999999999999987664
No 11
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.10 E-value=1.2e-10 Score=86.52 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=59.2
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
-.+.|.|.|..||+|+||+|+..||..+++.+.. ..+++.++.+++.+|.|+||.|+++||+..+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge-~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGE-RLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc-cCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 4577999999999999999999999999998853 346778999999999999999999999986543
No 12
>KOG0034|consensus
Probab=99.08 E-value=3.6e-10 Score=85.80 Aligned_cols=69 Identities=23% Similarity=0.367 Sum_probs=58.9
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhh------hhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCC
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQ------KQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNT 113 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~------~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~ 113 (125)
+..++..|..||.|++|+|+++|+..++..+... ...+.-++..|...|.|+||+||++||+..+...+
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 3589999999999999999999999999988642 12345688899999999999999999999887654
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.08 E-value=2e-10 Score=71.26 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=52.2
Q ss_pred HchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 49 TWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 49 ~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
+..|..+|.|++|.|+.+|++.++..+. .++..++.+++.+|.|+||.|+++||+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 3579999999999999999999988763 35667899999999999999999999987653
No 14
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.02 E-value=5.8e-10 Score=75.08 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=53.7
Q ss_pred hHHHchhcccCC-CC-CCcccHHHHHHHHHHHH----hhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 46 QVATWNFGTLDL-DK-NKVLEQEEWKNFRNLIS----QQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 46 ~~l~w~F~~lD~-n~-dG~Ld~~EL~~~~~~l~----~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
..+...|..+|. || ||+|+..||+.+++... ....++..++.+++..|.|+||.|+++||+.++.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 446778999997 98 69999999999987621 1123567899999999999999999999997764
No 15
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.02 E-value=7.2e-10 Score=74.25 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=54.0
Q ss_pred hHHHchhcccC-CCCCCc-ccHHHHHHHHHH-HHhh---hhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 46 QVATWNFGTLD-LDKNKV-LEQEEWKNFRNL-ISQQ---KQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 46 ~~l~w~F~~lD-~n~dG~-Ld~~EL~~~~~~-l~~~---~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
..|...|+.|| +|++|+ |+..||+.+++. +... ..++..++.+++.+|.|++|.|+++||+.++.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45778999997 999995 999999999975 4211 12567799999999999999999999988765
No 16
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.02 E-value=6.9e-10 Score=65.79 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=53.3
Q ss_pred HHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhh
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCL 109 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl 109 (125)
+.++|..+|.|++|.|+.+|+..+++.+. ...+...+..+++.+|.|++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57789999999999999999999998773 23456668889999999999999999998876
No 17
>KOG0027|consensus
Probab=99.00 E-value=6.4e-10 Score=80.48 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=58.1
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
...++-.|..+|.||||+|+..||+.++..+.. ..+...++.+++..|.|+||.|+|+||+..+..
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~-~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGE-KLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC-cCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 357899999999999999999999999998853 235677899999999999999999999988754
No 18
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.00 E-value=4.7e-10 Score=75.44 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=53.2
Q ss_pred HHHchhcccCC-CC-CCcccHHHHHHHHHHHH--hhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 47 VATWNFGTLDL-DK-NKVLEQEEWKNFRNLIS--QQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 47 ~l~w~F~~lD~-n~-dG~Ld~~EL~~~~~~l~--~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
.|--+|.+||. || +|+|+.+||+.+++... ....++..+..+++..|.|+||+|+|+||+..+.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 35678999999 88 99999999999997421 1223667899999999999999999999988765
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.99 E-value=7.6e-10 Score=74.66 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=56.4
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
....+.-.|..+|.|++|+|+.+|++.+++.+ +.++..++.+++.+|.|++|.|+++||+..+.
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 44568889999999999999999999998875 24667799999999999999999999998665
No 20
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.96 E-value=1.5e-09 Score=71.80 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=54.6
Q ss_pred hHHHchhcccCC--CCCCcccHHHHHHHHHHHHhhhh----hHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 46 QVATWNFGTLDL--DKNKVLEQEEWKNFRNLISQQKQ----LRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 46 ~~l~w~F~~lD~--n~dG~Ld~~EL~~~~~~l~~~~~----~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
..+.-.|..||+ |++|+|+.+||..+++....... .+..++.++...|.|++|.|+++||+..+..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 447788999999 89999999999999876322111 2567999999999999999999999987653
No 21
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.93 E-value=1.7e-09 Score=72.92 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=50.8
Q ss_pred HHchhcc-cCCCCCC-cccHHHHHHHHHHHHh----hhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 48 ATWNFGT-LDLDKNK-VLEQEEWKNFRNLISQ----QKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 48 l~w~F~~-lD~n~dG-~Ld~~EL~~~~~~l~~----~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
|.-.|.. .|++|+| +|+++||+.++..-.. .......++.+++.+|.|+||+|+|+||+..+.
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 5567999 7788987 9999999999887521 112346689999999999999999999987654
No 22
>KOG0027|consensus
Probab=98.93 E-value=1.4e-09 Score=78.69 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=60.8
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCC
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTN 114 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~ 114 (125)
...+.-.|..+|+|++|+|+..||..+++.+. ..+++..+..++..+|.|+||.|+++||+.++.....
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 35578899999999999999999999999985 3356788999999999999999999999999886544
No 23
>PTZ00184 calmodulin; Provisional
Probab=98.87 E-value=4.2e-09 Score=73.66 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=53.8
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
..+..+|..+|.|++|+|+..|+..++..+. ...+...++.++..+|.|+||.|+++||..++..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC-CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 4567789999999999999999999887752 2235667888999999999999999999988753
No 24
>PTZ00183 centrin; Provisional
Probab=98.87 E-value=5.2e-09 Score=74.28 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=55.6
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccC
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~ 112 (125)
...++.+|..+|.|++|+|+..|+..++..+. .......++.++...|.|++|.|+++||..++...
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELG-ETITDEELQEMIDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 45678889999999999999999999987653 22345568889999999999999999999998764
No 25
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.81 E-value=6.4e-09 Score=62.82 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=43.9
Q ss_pred CCCcccHHHHHHHHHHHHhhh-hhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 59 KNKVLEQEEWKNFRNLISQQK-QLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 59 ~dG~Ld~~EL~~~~~~l~~~~-~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
.+|+|+.+||+.++..+ ... .++..++.++..+|.|+||.|+++||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~-g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL-GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHT-TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh-CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 48999999999999655 233 5667799999999999999999999999874
No 26
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.77 E-value=1.9e-08 Score=67.32 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=52.4
Q ss_pred HHHchhcccCCC--CCCcccHHHHHHHHHHHHhhhhh----HHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 47 VATWNFGTLDLD--KNKVLEQEEWKNFRNLISQQKQL----RRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 47 ~l~w~F~~lD~n--~dG~Ld~~EL~~~~~~l~~~~~~----e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
.+.-.|..|+.+ ++|+|+..||+.++........+ +..++.+|+.+|.|+||.|+|+||+..+.
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 356789999986 48999999999999743221223 67899999999999999999999998765
No 27
>KOG0041|consensus
Probab=98.73 E-value=1.3e-08 Score=78.41 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=55.8
Q ss_pred HHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccC
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~ 112 (125)
+..+|++||.+.||+||..||+.++..|. .+.+---.+.+|+..|.|.||+||+.||+-.|++.
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 46689999999999999999999999884 33445568999999999999999999999888753
No 28
>PTZ00183 centrin; Provisional
Probab=98.65 E-value=6.2e-08 Score=68.69 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=35.0
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
..+..+|..+|.|++|.|+..|+..++.........+..++..|+.+|.|++|.|+.+||...+.
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34555566666666666666665555443321112233455555666666666666666665554
No 29
>PTZ00184 calmodulin; Provisional
Probab=98.58 E-value=1e-07 Score=66.56 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=49.1
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
...+..+|..+|.|++|.|+.+|+..++.........+..++..|+.+|.|++|.|+.+||..++..
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 4556778888888888888888888776654322223456777888888888888888888777654
No 30
>KOG0377|consensus
Probab=98.55 E-value=1.4e-07 Score=79.97 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=68.1
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh---hhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCCccCCCCCC
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK---QLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTNRANRSTPD 122 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~---~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~~~~~~~~~ 122 (125)
..|.-+|+.+|.|+.|.|+.+|++...+.+..+. -...|+-.+.+.+|.|+||+|.+.||+.+|.....+.-.-.|+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~~~~~~p~ 626 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRRRSTGRPS 626 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcchhhcCCCc
Confidence 4467789999999999999999999988876442 2578899999999999999999999999999988877777777
Q ss_pred CC
Q psy2690 123 ES 124 (125)
Q Consensus 123 ~~ 124 (125)
++
T Consensus 627 vt 628 (631)
T KOG0377|consen 627 VT 628 (631)
T ss_pred cc
Confidence 64
No 31
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.49 E-value=6.8e-08 Score=52.51 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=20.3
Q ss_pred HHchhcccCCCCCCcccHHHHHHHHHH
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNFRNL 74 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~~~~ 74 (125)
++++|..+|+|+||+||.+|+..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567778888888888888887777654
No 32
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.46 E-value=3.8e-07 Score=62.06 Aligned_cols=63 Identities=10% Similarity=0.173 Sum_probs=48.7
Q ss_pred HHHchhcccCCCCCCcccHHHHHHHHHHHH----hhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 47 VATWNFGTLDLDKNKVLEQEEWKNFRNLIS----QQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 47 ~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~----~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
.|.-.|.+|-. +.|.|++.||+.+++.=. ........++.+|+..|.|+||+|+|+||+..++
T Consensus 9 ~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 9 KMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 35667999984 456999999999986522 1112356799999999999999999999987654
No 33
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.41 E-value=1.1e-06 Score=73.38 Aligned_cols=56 Identities=27% Similarity=0.308 Sum_probs=48.6
Q ss_pred chhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccC
Q psy2690 43 GDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 43 ~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~ 112 (125)
...+.+.+.|..+|.|+||+|+.+|+.. ++.+|+..|.|+||.|+++||..+++..
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3668899999999999999999999832 3567899999999999999999987653
No 34
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.23 E-value=1.8e-06 Score=64.24 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=49.2
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCC
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNT 113 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~ 113 (125)
+.++..|..+|+|++|.|++.||..+++.+- ...++..+..++...|. +.+.|++.||+..++...
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLG-FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 5566779999999999999999999988763 33456667777777776 677777777776666543
No 35
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.18 E-value=3.6e-06 Score=58.44 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=53.5
Q ss_pred CchhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 42 TGDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 42 ~~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
..+.+...-+|..+| +++|+|+..+.+.++.. .+.+......+...+|.|+||.++++||+.++..
T Consensus 6 ~~e~~~y~~~F~~l~-~~~g~isg~~a~~~f~~---S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLD-PQDGKISGDQAREFFMK---SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CCHHHHHHHHHHCTS-SSTTEEEHHHHHHHHHH---TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCCeEeHHHHHHHHHH---cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 346666788999999 57999999999998664 3356677888999999999999999999886653
No 36
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.18 E-value=1.3e-06 Score=47.40 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.3
Q ss_pred HhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 85 GKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 85 ~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
++.+|+..|.|+||.||++||..++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 56788999999999999999998874
No 37
>KOG0037|consensus
Probab=98.15 E-value=3.9e-06 Score=65.12 Aligned_cols=65 Identities=18% Similarity=0.365 Sum_probs=54.8
Q ss_pred hHHHc--hhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 46 QVATW--NFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 46 ~~l~w--~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.+-.| +|..+|+|++|.|+..||+..+..+- ...+.+-.+.++++.|.-++|.|.+++|+.|+..
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G-y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLG-YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcC-cCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 44445 59999999999999999999998872 3357788899999999878999999999998763
No 38
>KOG0038|consensus
Probab=98.14 E-value=8.2e-06 Score=60.51 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=54.6
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhh----HHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQL----RRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~----e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.-.+.+.|+.||-|+|++|....|...+..+-+...+ +...++.+...|.||||+||+.||...+..
T Consensus 107 dlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 107 DLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 3456788999999999999999999999888542222 345678889999999999999999876654
No 39
>KOG0044|consensus
Probab=98.12 E-value=4e-06 Score=64.05 Aligned_cols=66 Identities=24% Similarity=0.202 Sum_probs=52.3
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
-.....-+|+.+|.|+||.|+-+|+...+..+.+ +..++-.+-.|+.+|.|+||.|+++|++..+.
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQ 127 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceEcHHHHHHHHH
Confidence 4466788899999999999999996666655532 23455566778999999999999999987654
No 40
>KOG0036|consensus
Probab=98.07 E-value=2.9e-06 Score=71.21 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=54.0
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh-hhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCC
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK-QLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNT 113 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~-~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~ 113 (125)
+..+.-+|+.+|.++||.+|-.+|.+.+..+. ++ .+.+.+..++..||.|.||.++|.||..++...+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~-~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E 81 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD-HPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE 81 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcC-CCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH
Confidence 34456679999999999999999988888774 33 4566788899999999999999999988887544
No 41
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.07 E-value=3e-06 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=13.2
Q ss_pred hHhhhhhcCCCCCccCHHHHHH
Q psy2690 86 KKLPRHCDANNDKKISLSEWLN 107 (125)
Q Consensus 86 ~~f~~~cD~d~Dg~Is~~Ef~~ 107 (125)
+.+|+.+|.|+||+||.+||..
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 3455666666666666666654
No 42
>KOG4223|consensus
Probab=98.04 E-value=4.4e-06 Score=67.99 Aligned_cols=60 Identities=27% Similarity=0.269 Sum_probs=46.5
Q ss_pred hhcccCCCCCCcccHHHHHHHHHHHHhhh-hhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 51 NFGTLDLDKNKVLEQEEWKNFRNLISQQK-QLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 51 ~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~-~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.|+.-|.|+||.|+++|+-.|+..=. ++ ...-.++.-+.-.|.||||+|+++||+.=+-.
T Consensus 168 rFk~AD~d~dg~lt~EEF~aFLHPEe-~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 168 RFKAADQDGDGSLTLEEFTAFLHPEE-HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHhhcccCCCCcccHHHHHhccChhh-cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 39999999999999999999966432 11 12334566677899999999999999965543
No 43
>KOG0028|consensus
Probab=98.04 E-value=1.3e-05 Score=59.88 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=56.4
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
..|..+|...|.|++|+|+..+|+.+.+.|.. ..........+...|.|+||.|+.+||...+..
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeLge-nltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKELGE-NLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHhCc-cccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 55788999999999999999999999998853 235677899999999999999999999887654
No 44
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.04 E-value=2.6e-06 Score=44.66 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHchhcccCCCCCCcccHHHHHHHH
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNFR 72 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~~ 72 (125)
|+-.|..+|.|+||.||.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3557999999999999999999863
No 45
>PLN02964 phosphatidylserine decarboxylase
Probab=97.99 E-value=9.8e-06 Score=71.44 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=56.1
Q ss_pred HHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccC
Q psy2690 47 VATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 47 ~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~ 112 (125)
.+.-+|..+|.|+||.|+.+|+..++..+.. ..++..++.+|+.+|.|+||.|+++||...+...
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~-~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGN-LVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc-CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 4788999999999999999999999987642 2356668999999999999999999999887763
No 46
>KOG0036|consensus
Probab=97.98 E-value=1.1e-05 Score=67.80 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=56.9
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCC
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNT 113 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~ 113 (125)
+..|..+|..+|+|+||.|+.+||...++.+. .....+.+.+|++++|.|+++.|.++||...+-..+
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g-i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG-IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhC-CccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 34566789999999999999999999988874 334566788899999999999999999998776544
No 47
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.94 E-value=4.4e-06 Score=45.36 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHchhcccCCCCCCcccHHHHHHHHH
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNFRN 73 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~~~ 73 (125)
+...|+.+|.|+||+|+.+||..+++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45568888888888888888887766
No 48
>KOG4251|consensus
Probab=97.91 E-value=1.7e-05 Score=63.29 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=53.6
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh--hhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK--QLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~--~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
-+..|.-+|.+.|.|.||+|+..|++.-+..-..-. ......+.+|+..|.||||.|+.+||..-|..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 346788899999999999999999988755432111 22345789999999999999999999876654
No 49
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.84 E-value=3.1e-05 Score=47.39 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhh
Q psy2690 62 VLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCL 109 (125)
Q Consensus 62 ~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl 109 (125)
+++.+|++.+++.+. +...+..+..+|+.||.+++|.|..+||....
T Consensus 1 kmsf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 478899999999873 45678899999999999999999999998654
No 50
>KOG4065|consensus
Probab=97.68 E-value=9.9e-05 Score=52.79 Aligned_cols=59 Identities=27% Similarity=0.270 Sum_probs=48.2
Q ss_pred chhcccCCCCCCcccHHHHHHHHHHHHhhh-------------hhHHHHhHhhhhhcCCCCCccCHHHHHHh
Q psy2690 50 WNFGTLDLDKNKVLEQEEWKNFRNLISQQK-------------QLRRCGKKLPRHCDANNDKKISLSEWLNC 108 (125)
Q Consensus 50 w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~-------------~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~c 108 (125)
-.|+..|.|+||+|+--||...+.-..+.. ..+.-++..++--|.|+||.|.|.||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 359999999999999999999887765410 12456778888889999999999999864
No 51
>KOG0031|consensus
Probab=97.67 E-value=6.1e-05 Score=56.04 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=50.5
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh--------------------------------hhHHHHhHhhhhhc
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK--------------------------------QLRRCGKKLPRHCD 93 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~--------------------------------~~e~c~~~f~~~cD 93 (125)
+.++..|+.+|+|+||.|+++.|+..+..+.+.+ .++..+..-|+-+|
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD 111 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFD 111 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Confidence 5578889999999999999999999998875421 03445666667778
Q ss_pred CCCCCccCHHHHHHhhccC
Q psy2690 94 ANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 94 ~d~Dg~Is~~Ef~~cl~~~ 112 (125)
.++.|+|.-+.+...|...
T Consensus 112 ~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 112 DEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred ccCCCccCHHHHHHHHHHh
Confidence 8888888777776666553
No 52
>PLN02964 phosphatidylserine decarboxylase
Probab=97.61 E-value=6.8e-05 Score=66.22 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=49.3
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHH---HHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRR---CGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~---c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.+.+...|..+|.|+||+| |..+++.+....+.+. .++.+|+.+|.|+||.|+++||+.++..
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA 207 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 3456777999999999997 7777777631122333 3789999999999999999999988764
No 53
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.57 E-value=5.8e-05 Score=40.84 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.6
Q ss_pred HhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 85 GKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 85 ~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
.+.+|+.+|.|+||.|+.+||..+|.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 46788999999999999999999886
No 54
>KOG4223|consensus
Probab=97.54 E-value=0.00029 Score=57.56 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=51.3
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
...|..+|..+|.|+||+|+.+||+.-+..-.+....+. +.+-+...|.|+||.|+++|+...+-.
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~-~~~~~~~~d~~~Dg~i~~eey~~~~~~ 141 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEE-AARRWDEYDKNKDGFITWEEYLPQTYG 141 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCccceeeHHHhhhhhhh
Confidence 456788999999999999999999998765543222333 445556789999999999999876653
No 55
>KOG3866|consensus
Probab=97.52 E-value=0.00012 Score=60.14 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=47.7
Q ss_pred hhcccCCCCCCcccHHHHHHHHHHHHhhhh-----------h----HHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 51 NFGTLDLDKNKVLEQEEWKNFRNLISQQKQ-----------L----RRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 51 ~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~-----------~----e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.|...|.|+||+|+..||.+++..=...+. . -+...-.|+..|+|.|..||++||++.-..
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 599999999999999999999765322110 0 134566889999999999999999986554
No 56
>KOG0028|consensus
Probab=97.49 E-value=0.00017 Score=53.90 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=48.7
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
-.+.++-.|..+|.+++|+|+-+||+-.++.+. ..+....+..++...|.++-|+|++++|...+.
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt 96 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMT 96 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHH
Confidence 447788999999999999999999987777663 222345566677777777777777777765544
No 57
>PF14658 EF-hand_9: EF-hand domain
Probab=97.45 E-value=0.00026 Score=45.53 Aligned_cols=61 Identities=10% Similarity=0.177 Sum_probs=53.9
Q ss_pred hhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCC-CccCHHHHHHhhcc
Q psy2690 51 NFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANND-KKISLSEWLNCLNV 111 (125)
Q Consensus 51 ~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~D-g~Is~~Ef~~cl~~ 111 (125)
.|...|..+.|.+.-+.|..+++.+-...+.+..++.+.+..|.++. |.|+++.|+..|..
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 69999999999999999999999885325678889999999999887 99999999987753
No 58
>KOG0046|consensus
Probab=97.42 E-value=0.0002 Score=61.86 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=57.9
Q ss_pred CchhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh--hhHHHHhHhhhhhcCCCCCccCHHHHHH-hhccC
Q psy2690 42 TGDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK--QLRRCGKKLPRHCDANNDKKISLSEWLN-CLNVN 112 (125)
Q Consensus 42 ~~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~--~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~-cl~~~ 112 (125)
..+-..|+.+|..+| |++|+|+..||..++....... ..+..++.++...+.|.||+|+++||+. |+...
T Consensus 15 q~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 345567899999999 9999999999999988774211 2366799999999999999999999997 66543
No 59
>KOG0034|consensus
Probab=97.01 E-value=0.0014 Score=49.81 Aligned_cols=63 Identities=19% Similarity=0.322 Sum_probs=44.0
Q ss_pred hHHHchhcccCCC-CCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCc-cCHHHHHHhhccCC
Q psy2690 46 QVATWNFGTLDLD-KNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKK-ISLSEWLNCLNVNT 113 (125)
Q Consensus 46 ~~l~w~F~~lD~n-~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~-Is~~Ef~~cl~~~~ 113 (125)
..|--.|.+||++ ++|+|+++|+..+.... ..--+.++++..|.+++|. |+++||...|..=.
T Consensus 33 ~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~-----~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~ 97 (187)
T KOG0034|consen 33 ERLYERFKKLDRNNGDGYLTKEEFLSIPELA-----LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFS 97 (187)
T ss_pred HHHHHHHHHhccccccCccCHHHHHHHHHHh-----cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhc
Confidence 3456679999998 99999999999887332 1223555666667777777 77777777766533
No 60
>KOG0037|consensus
Probab=97.01 E-value=0.0012 Score=51.42 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=14.5
Q ss_pred HHHchhcccCCCCCCcccHHHHHHHHH
Q psy2690 47 VATWNFGTLDLDKNKVLEQEEWKNFRN 73 (125)
Q Consensus 47 ~l~w~F~~lD~n~dG~Ld~~EL~~~~~ 73 (125)
.|.-.|...|+|+.|.|+.+||...+.
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLs 84 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALS 84 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhh
Confidence 344445555555555555555555544
No 61
>KOG0040|consensus
Probab=96.97 E-value=0.0018 Score=61.86 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=55.9
Q ss_pred HHchhcccCCCCCCcccHHHHHHHHHHHH-hh-----hhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCC
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNFRNLIS-QQ-----KQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTN 114 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~-~~-----~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~ 114 (125)
..-+|+++|++.+|.|+.++++.|++.+. .. +.++...+.++...|.|.||-||+.+|+.+|-....
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 56689999999999999999999999872 21 124457899999999999999999999988875443
No 62
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.97 E-value=0.00057 Score=33.93 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=13.6
Q ss_pred HchhcccCCCCCCcccHHHHHHHHH
Q psy2690 49 TWNFGTLDLDKNKVLEQEEWKNFRN 73 (125)
Q Consensus 49 ~w~F~~lD~n~dG~Ld~~EL~~~~~ 73 (125)
+.+|..+|.|++|.|+..|+..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3455555555555555555555543
No 63
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.81 E-value=0.0013 Score=32.54 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.6
Q ss_pred HhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 85 GKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 85 ~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
++.+++.+|.|++|.|++.||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 35678899999999999999998875
No 64
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.72 E-value=0.0016 Score=38.82 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=26.0
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHH
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNL 74 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~ 74 (125)
+.+..+|..+|.|+||+|+..|+..+++.
T Consensus 25 ~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 25 EEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 44899999999999999999999998764
No 65
>KOG2643|consensus
Probab=96.69 E-value=0.0031 Score=53.63 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=43.3
Q ss_pred HchhcccCCCCCCcccHHHHHHHHHHHHhhh----------------hhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 49 TWNFGTLDLDKNKVLEQEEWKNFRNLISQQK----------------QLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 49 ~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~----------------~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
.=.|..+|.||||-||++|+..+.+.+.... ..+-+.-=....+-.+++|++|++||...+.
T Consensus 236 ~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 236 RIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred eeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 3369999999999999999999987765310 0011111122234679999999999987654
No 66
>KOG0031|consensus
Probab=96.65 E-value=0.0047 Score=46.11 Aligned_cols=65 Identities=9% Similarity=0.168 Sum_probs=57.2
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
+.+|.-.|..+|.++.|+|..+.|+.++...-. ...+..|+.+++.|=.|..|.|.|.+|+..+.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD-r~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD-RFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc-cCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 577888999999999999999999999887532 24567799999999999999999999998876
No 67
>KOG2562|consensus
Probab=96.56 E-value=0.0066 Score=51.93 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=48.9
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh--------hhHHHHhHhhhhhcCCCCCccCHHHHHHh
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK--------QLRRCGKKLPRHCDANNDKKISLSEWLNC 108 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~--------~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~c 108 (125)
.+.|+.+|.-+|.++||.|+..||..+.....+.. .-+-+...+++.+---..++|++++|..|
T Consensus 350 ~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 350 PASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred ccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 36689999999999999999999999987764321 12445556665544455999999999875
No 68
>KOG0030|consensus
Probab=96.33 E-value=0.0055 Score=45.03 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=50.8
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCC--CCCccCHHHHHHhhc
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDAN--NDKKISLSEWLNCLN 110 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d--~Dg~Is~~Ef~~cl~ 110 (125)
...++.+|..+|+++||+|+-+..-.+++++.. .+++..+.+-+...+.+ +-.+|+|++|+-.+.
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~-nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQ-NPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQ 76 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcC-CCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHH
Confidence 367889999999999999999999999999853 34566666666666655 447899999875544
No 69
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.32 E-value=0.0034 Score=38.61 Aligned_cols=29 Identities=24% Similarity=0.122 Sum_probs=25.1
Q ss_pred HhHhhhhhcCCCCCccCHHHHHHhhccCC
Q psy2690 85 GKKLPRHCDANNDKKISLSEWLNCLNVNT 113 (125)
Q Consensus 85 ~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~ 113 (125)
++..|+.+|+|+||.|+.+|+..++..-.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 56788999999999999999998877544
No 70
>KOG1955|consensus
Probab=96.29 E-value=0.007 Score=52.53 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=55.7
Q ss_pred CCCchhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 40 FSTGDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 40 ~~~~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
+..+-+++.--.|..+-.|-+|+|+-+--+.|+..-+ .+-....-+...||+|.||-+++.|||.+|..
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3444566677789999999999999999999987542 22234677889999999999999999998864
No 71
>KOG0030|consensus
Probab=96.24 E-value=0.011 Score=43.40 Aligned_cols=58 Identities=9% Similarity=0.145 Sum_probs=47.6
Q ss_pred chhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhh
Q psy2690 50 WNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCL 109 (125)
Q Consensus 50 w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl 109 (125)
.-...+|+.++|+|...||+.++..+-+. ..+..++.++.. -.|.+|.|.|+.|..-+
T Consensus 92 egLrvFDkeg~G~i~~aeLRhvLttlGek-l~eeEVe~Llag-~eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 92 EGLRVFDKEGNGTIMGAELRHVLTTLGEK-LTEEEVEELLAG-QEDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHhhcccCCcceeHHHHHHHHHHHHhh-ccHHHHHHHHcc-ccccCCcCcHHHHHHHH
Confidence 34788999999999999999999998543 356668888865 45899999999998643
No 72
>KOG2643|consensus
Probab=95.77 E-value=0.0054 Score=52.22 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=47.2
Q ss_pred hcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 52 F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
+=.||.+.+|.|+-+|..-++..|- .+++..+.-|+..|+||||.|+.+||.....
T Consensus 205 siF~~lg~~GLIsfSdYiFLlTlLS---~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~ 260 (489)
T KOG2643|consen 205 SIFYKLGESGLISFSDYIFLLTLLS---IPERNFRIAFKMFDLDGNGEIDKEEFETVQQ 260 (489)
T ss_pred eeEEEcCCCCeeeHHHHHHHHHHHc---cCcccceeeeeeeecCCCCcccHHHHHHHHH
Confidence 3357778999999999999999885 5677777778899999999999999987653
No 73
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.35 E-value=0.039 Score=37.49 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=29.8
Q ss_pred chhhHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 43 GDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 43 ~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
.+...+..+|..+|.|+||.|+-+|.-.++..+
T Consensus 45 ~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 45 NDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 356788999999999999999999999998876
No 74
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.27 E-value=0.018 Score=35.22 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=26.6
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
....+..+|...|++++|.|+.+|+..+.+.|
T Consensus 19 ~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 19 DDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp -HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 44667889999999999999999999997754
No 75
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.21 E-value=0.096 Score=35.52 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=45.7
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh----------hhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCC
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK----------QLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNT 113 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~----------~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~ 113 (125)
.++++.+|.++ .|+||.+++.-|..+++.+.+++ ..+..++.-|... ....+|+.++|+.++..++
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCC
Confidence 35678899999 79999999999999999887542 2456677777665 4788999999999998874
No 76
>KOG1029|consensus
Probab=95.06 E-value=0.022 Score=51.76 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=47.4
Q ss_pred HchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 49 TWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 49 ~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
.-+|+.+|+-..|+|+-..-+.++-. ...+......+...-|+|+||+++-+||+..+-
T Consensus 198 ~QlFNa~DktrsG~Lsg~qaR~aL~q---S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 198 RQLFNALDKTRSGYLSGQQARSALGQ---SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHhhhcccccccccccHHHHHHHHh---cCCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 44799999999999999988877543 234566667777789999999999999986543
No 77
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=94.91 E-value=0.024 Score=34.36 Aligned_cols=25 Identities=28% Similarity=0.185 Sum_probs=21.9
Q ss_pred HhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 87 KLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 87 ~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
..|+.+|.|+||.|+.+|+..+|..
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4677899999999999999998854
No 78
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=94.82 E-value=0.055 Score=36.18 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=27.5
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
...+.-++..+|.|+||.||.+|+..++..+
T Consensus 52 ~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 52 PMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3467888999999999999999999998876
No 79
>KOG0377|consensus
Probab=94.53 E-value=0.062 Score=46.31 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=49.7
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh----------------------------------------------
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK---------------------------------------------- 79 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~---------------------------------------------- 79 (125)
..|...|..+|..+.|+|+-..+..++..+-..+
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 3467789999999999999999988877654210
Q ss_pred hhHHHHhHhhhhhcCCCCCccCHHHHHHhh
Q psy2690 80 QLRRCGKKLPRHCDANNDKKISLSEWLNCL 109 (125)
Q Consensus 80 ~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl 109 (125)
..+.-.+.+|+.+|+|+.|.||++||....
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~ 573 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAW 573 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHH
Confidence 012346788999999999999999998653
No 80
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=94.39 E-value=0.045 Score=36.73 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=27.1
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
..+..+|..+|.|+||.|+.+|+..++..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 568999999999999999999998887766
No 81
>KOG2562|consensus
Probab=94.24 E-value=0.14 Score=44.01 Aligned_cols=60 Identities=13% Similarity=0.297 Sum_probs=41.0
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhh----hhcCCCCCccCHHHHHHhh
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPR----HCDANNDKKISLSEWLNCL 109 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~----~cD~d~Dg~Is~~Ef~~cl 109 (125)
.++--+|-.||.|+||.|++++|+..-... .++.-++++|. ..=+-.+|+++|++|+-.+
T Consensus 278 ~viy~kFweLD~Dhd~lidk~~L~ry~d~t----lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fi 341 (493)
T KOG2562|consen 278 YVIYCKFWELDTDHDGLIDKEDLKRYGDHT----LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFI 341 (493)
T ss_pred HHHHHHHhhhccccccccCHHHHHHHhccc----hhhHHHHHHHhhccccceeeecCcccHHHHHHHH
Confidence 444446899999999999999999885543 24555666665 2233467777777776543
No 82
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=93.84 E-value=0.064 Score=35.70 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=23.5
Q ss_pred HhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 85 GKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 85 ~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.+..|+.+|.|++|.|+.+|+..+|..
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 455678899999999999999999865
No 83
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.84 E-value=0.051 Score=35.15 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=48.9
Q ss_pred HHchhcccCCCCCCcccHHHHHHHHHHHHhhh-hhHHHHhHhhhhhcCC----CCCccCHHHHHHhhccCCCc
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK-QLRRCGKKLPRHCDAN----NDKKISLSEWLNCLNVNTNR 115 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~-~~e~c~~~f~~~cD~d----~Dg~Is~~Ef~~cl~~~~~~ 115 (125)
|.-+|..|= ++.+.|+.+++..+++.-++.. .....++.+|.....+ ..+.||+++|..+|.-..+.
T Consensus 2 i~~if~~ys-~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~ 73 (83)
T PF09279_consen 2 IEEIFRKYS-SDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDENS 73 (83)
T ss_dssp HHHHHHHHC-TTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCB
T ss_pred HHHHHHHHh-CCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcCC
Confidence 466788894 4899999999999998765321 2344566666665443 58999999999999766554
No 84
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=93.71 E-value=0.077 Score=35.33 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=26.9
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
.+.+..+|..+|.|++|.|+.+|+..++..+
T Consensus 50 ~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 50 DAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3567889999999999999999998887765
No 85
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=93.64 E-value=0.077 Score=30.35 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=23.5
Q ss_pred HhHhhhhhcCCCCCccCHHHHHHhhccC
Q psy2690 85 GKKLPRHCDANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 85 ~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~ 112 (125)
+...++.+|.|++|.|++.||..++..-
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 3456788999999999999999888654
No 86
>KOG4251|consensus
Probab=93.53 E-value=0.11 Score=41.85 Aligned_cols=54 Identities=24% Similarity=0.317 Sum_probs=43.3
Q ss_pred cccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHH
Q psy2690 53 GTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLN 107 (125)
Q Consensus 53 ~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~ 107 (125)
..+|.|+||..+.+||..++....-. ..-..+..+|..-|.|+|-++|.+|.+.
T Consensus 288 ElIDsNhDGivTaeELe~y~dP~n~~-~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 288 ELIDSNHDGIVTAEELEDYVDPQNFR-LALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHhhcCCccceeHHHHHhhcCchhhh-hhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 46799999999999999996655321 2234578888899999999999999875
No 87
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=93.44 E-value=0.11 Score=34.71 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=27.1
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
...+.-+|..+|.|+||.|+-+|+..++..+
T Consensus 51 ~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 51 PGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567778999999999999999999887765
No 88
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=93.16 E-value=0.077 Score=37.33 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.6
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHH
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFR 72 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~ 72 (125)
+.-+.-.|..+|.|+||+||.+|+..++
T Consensus 79 e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 79 EHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3445678999999999999999999997
No 89
>KOG4666|consensus
Probab=92.80 E-value=0.11 Score=43.23 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=51.3
Q ss_pred chhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 43 GDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 43 ~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.-...|+..|+.++..-||++...+|-.+++... +...-.+-.++...+.-.||+|++.+|......
T Consensus 293 ~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 293 VTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred CcHHHHHHHHHhcccccccccchHHHHHHHHHhc--CcceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 3456778889999999999999888888877653 223444667888888889999999999876554
No 90
>KOG0169|consensus
Probab=92.80 E-value=0.24 Score=44.73 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=54.6
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCC
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNT 113 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~ 113 (125)
.-+.-+|...|+|+||.++..|...+++.+. .......+...++.||.-+++++...|+........
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc
Confidence 3344469999999999999999999988773 334567789999999999999999999987665433
No 91
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=92.14 E-value=0.19 Score=33.23 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=26.8
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
...+.-+|..+|.|++|.|+.+|+..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567889999999999999999998887654
No 92
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=91.04 E-value=0.26 Score=32.45 Aligned_cols=31 Identities=10% Similarity=0.106 Sum_probs=26.9
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
.+.+.-+|..+|.|++|.|+.+|+..++..+
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3457889999999999999999999987765
No 93
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=90.80 E-value=0.38 Score=24.13 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=13.5
Q ss_pred CCCCCCcccHHHHHHHHHH
Q psy2690 56 DLDKNKVLEQEEWKNFRNL 74 (125)
Q Consensus 56 D~n~dG~Ld~~EL~~~~~~ 74 (125)
|.|+||.|+.-.+..+.+.
T Consensus 1 DvN~DG~vna~D~~~lk~y 19 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKKY 19 (21)
T ss_dssp -TTSSSSSSHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHH
Confidence 6788888888777766554
No 94
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=90.53 E-value=0.33 Score=32.25 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=26.5
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
...+.-++..+|.|+||.|+-+|+..++..+
T Consensus 50 ~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 50 QEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3457888999999999999999998887765
No 95
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=89.77 E-value=0.39 Score=31.75 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=26.0
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
+.+.-+|..+|.|++|.|+.+|+..++..+
T Consensus 51 ~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 51 MAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456778999999999999999999887755
No 96
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=89.44 E-value=0.42 Score=30.95 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=23.6
Q ss_pred HHhHhhhhhcC--CCCCccCHHHHHHhhcc
Q psy2690 84 CGKKLPRHCDA--NNDKKISLSEWLNCLNV 111 (125)
Q Consensus 84 c~~~f~~~cD~--d~Dg~Is~~Ef~~cl~~ 111 (125)
.++..|..+|. |++|.|+.+|+..++..
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 35566788999 89999999999998864
No 97
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=89.04 E-value=0.54 Score=39.56 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.5
Q ss_pred HHHHhHhhhhhcCCCCCccCHHHHH
Q psy2690 82 RRCGKKLPRHCDANNDKKISLSEWL 106 (125)
Q Consensus 82 e~c~~~f~~~cD~d~Dg~Is~~Ef~ 106 (125)
+..++..|+.+|.|+||.|+.+||.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 4567889999999999999999996
No 98
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=88.68 E-value=0.43 Score=32.95 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=27.9
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHHH
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLIS 76 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~ 76 (125)
.+.|.-+|..-|.|+||+|+..|+.-.++.+.
T Consensus 42 ~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 42 RDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 47789999999999999999999999988774
No 99
>KOG1707|consensus
Probab=88.44 E-value=1.6 Score=38.80 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=29.9
Q ss_pred HHhHhhhhhcCCCCCccCHHHHHHhhccCCCccCCCCCC
Q psy2690 84 CGKKLPRHCDANNDKKISLSEWLNCLNVNTNRANRSTPD 122 (125)
Q Consensus 84 c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~~~~~~~~~ 122 (125)
.....+..+|.|+||.++-.|+...|...+..+=-++|+
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~ 354 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPY 354 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcc
Confidence 355667789999999999999999988776665444443
No 100
>KOG4666|consensus
Probab=83.22 E-value=1.1 Score=37.33 Aligned_cols=68 Identities=9% Similarity=-0.136 Sum_probs=54.1
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
..+++.-+|..+|.+++|.+|..|.-..+..+-.-.....-++--++.++++-||-+.-.++...+..
T Consensus 257 vsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 257 VSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 55889999999999999999999988777766432234555777788899999999999888655543
No 101
>KOG4065|consensus
Probab=81.84 E-value=2.7 Score=30.25 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=22.9
Q ss_pred chhhHHHchhcccCCCCCCcccHHHHHH
Q psy2690 43 GDEQVATWNFGTLDLDKNKVLEQEEWKN 70 (125)
Q Consensus 43 ~~~~~l~w~F~~lD~n~dG~Ld~~EL~~ 70 (125)
+....+.-+.+-.|.|+||+|+.-|+..
T Consensus 114 Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 114 ELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred HHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 3456677789999999999999998754
No 102
>KOG4347|consensus
Probab=81.20 E-value=2 Score=38.42 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=46.5
Q ss_pred HHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHH
Q psy2690 47 VATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEW 105 (125)
Q Consensus 47 ~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef 105 (125)
.+...|..+|.+++|.|+-+++...+..+.. +..-+-++-|++-+|.++| ....+|-
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 3566799999999999999999999998863 2233448888999999999 8887774
No 103
>KOG0751|consensus
Probab=80.80 E-value=2.7 Score=36.98 Aligned_cols=58 Identities=10% Similarity=0.152 Sum_probs=43.4
Q ss_pred hcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccC
Q psy2690 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 52 F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~ 112 (125)
=..-|.-+||.||-+|...+-..+. .++.--...|..+|..+.|.+|++++...|+..
T Consensus 80 a~iaD~tKDglisf~eF~afe~~lC---~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 80 ASIADQTKDGLISFQEFRAFESVLC---APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HhhhhhcccccccHHHHHHHHhhcc---CchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 3456778889999999888866654 345445556677899999999999998888754
No 104
>KOG0040|consensus
Probab=79.98 E-value=1.9 Score=42.46 Aligned_cols=25 Identities=16% Similarity=0.461 Sum_probs=22.5
Q ss_pred HhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 87 KLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 87 ~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
-.|+++|.+++|.+++.+|..||..
T Consensus 2257 ~~fkhFDkek~G~Ldhq~F~sCLrs 2281 (2399)
T KOG0040|consen 2257 MMFKHFDKEKNGRLDHQHFKSCLRS 2281 (2399)
T ss_pred HHHHHhchhhccCCcHHHHHHHHHh
Confidence 3578999999999999999999874
No 105
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=77.02 E-value=2.9 Score=27.70 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=30.2
Q ss_pred CCCcccHHHHHHHHHHHHhh-hhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 59 KNKVLEQEEWKNFRNLISQQ-KQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 59 ~dG~Ld~~EL~~~~~~l~~~-~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
-||.++..|...+...+.+. ..+....+.++..+..-.+...++.+|..-+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 36777777777776665442 223344555555555555555666666655443
No 106
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=76.26 E-value=1.6 Score=30.29 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=19.0
Q ss_pred HHchhcccCCCCCCcccHHHHHHH
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNF 71 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~ 71 (125)
+.-.|+.=|.|+||.||..|+..+
T Consensus 90 ~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHccC
Confidence 566899999999999999998753
No 107
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=73.80 E-value=11 Score=28.44 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=51.2
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHh-----------h------------------------------------
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQ-----------Q------------------------------------ 78 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~-----------~------------------------------------ 78 (125)
-+|...-..+|+|+||.|...|.-.-++.|-= +
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 45777788899999999999998776665420 0
Q ss_pred -----hhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCC
Q psy2690 79 -----KQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTN 114 (125)
Q Consensus 79 -----~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~ 114 (125)
....+..+.+|.+++..+.+.||+.|....+..+..
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 001245788889999888899999998887765443
No 108
>KOG2243|consensus
Probab=73.37 E-value=5.6 Score=39.52 Aligned_cols=59 Identities=8% Similarity=0.168 Sum_probs=44.1
Q ss_pred hhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 51 NFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 51 ~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.|+.||.||.|.|+++++...+..... .....++-++.-..+|.+..+.|++|..-|..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~--ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKH--YTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcccc--chhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 399999999999999999988776532 22333444444445689999999999987753
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=72.51 E-value=6.9 Score=29.62 Aligned_cols=67 Identities=9% Similarity=-0.108 Sum_probs=44.5
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhh-----hhcCCCCCccCHHHHHHhhc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPR-----HCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~-----~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
+.+..+-+|.+|++.+.+.|+..|+..+++......-+---+..+++ ..-.|+||.++.+.-..|..
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGVYD 165 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhhcc
Confidence 34778999999999999999999999998875431111101111111 12247899999988776653
No 110
>KOG0038|consensus
Probab=72.47 E-value=7 Score=29.33 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=49.1
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
-++.+-..|. .||.|-|+-..+..++..+.+..+.+--+.--|+.+|-|+|+-|-.+....|+..
T Consensus 72 fk~ri~e~FS---eDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 72 FKRRICEVFS---EDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHHHHHhc---cCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHH
Confidence 3444445555 5999999999999888877654444445666778899999999999998888763
No 111
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=70.08 E-value=3.7 Score=31.39 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.6
Q ss_pred ccCCCCCCcccHHHHHHHHHHHH
Q psy2690 54 TLDLDKNKVLEQEEWKNFRNLIS 76 (125)
Q Consensus 54 ~lD~n~dG~Ld~~EL~~~~~~l~ 76 (125)
-+|.|+||.++.+|+..+.+.+.
T Consensus 58 ~~D~~~dg~~~~~el~~l~~~~~ 80 (212)
T PF06226_consen 58 GLDKDGDGKLDPEELAALAKEIF 80 (212)
T ss_pred hhhhcccCCCCHHHHHHHHHHHH
Confidence 57999999999999999988764
No 112
>KOG0998|consensus
Probab=69.52 E-value=1.1 Score=41.23 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=52.7
Q ss_pred chhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 43 GDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 43 ~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.+...+..+|.+.|.+.+|+|+-.+...++-.. +.+...+......||..+.|.|+++||...+..
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~---gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPF---GLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccC---CCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 355666778999999999999999999987652 234445666677999999999999999866554
No 113
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=69.20 E-value=1.4 Score=30.67 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=36.2
Q ss_pred CCCcccHHHHHHHHHHHHhh-hhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccC
Q psy2690 59 KNKVLEQEEWKNFRNLISQQ-KQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 59 ~dG~Ld~~EL~~~~~~l~~~-~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~ 112 (125)
-||.++.+|+..+...+... ..+......++..++.-....+++.+|+..+...
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 90 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDS 90 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHh
Confidence 58999999999998877322 2234456666667776666678888888777654
No 114
>KOG1029|consensus
Probab=67.92 E-value=9.8 Score=35.30 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=47.9
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
+...-.-+|..|- .+.|+|+-..-+.++- ..+.+....-.+....|+|+||+++..||..++.
T Consensus 14 Er~K~~~qF~~Lk-p~~gfitg~qArnffl---qS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 14 ERQKHDAQFGQLK-PGQGFITGDQARNFFL---QSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHHHHHHHHhccC-CCCCccchHhhhhhHH---hcCCChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 4445556777774 8899999999888843 2334566677788899999999999999976554
No 115
>KOG0751|consensus
Probab=67.09 E-value=7.5 Score=34.33 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=43.0
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh-hhHHHHhHhhhhhcCCCCCccCHHHHHH
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK-QLRRCGKKLPRHCDANNDKKISLSEWLN 107 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~-~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~ 107 (125)
..+--.|...+.|+--+.+.+......-.|.... ..+.-++-+-...|.-+||-||++||+.
T Consensus 36 r~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~a 98 (694)
T KOG0751|consen 36 RSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRA 98 (694)
T ss_pred HHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHH
Confidence 3345567788999999999998877755554322 2334344444456889999999999974
No 116
>KOG0042|consensus
Probab=65.80 E-value=10 Score=33.93 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=52.4
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
+-...+-.|..+|.|+-|+++-..+...++... ..-++......++..|.+.+|.+++.||.+.+..
T Consensus 591 ~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 591 DFLRRKTRFAFLDADKKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 334456679999999999999888888877654 1234556778888999999999999999876653
No 117
>KOG0041|consensus
Probab=64.30 E-value=6.4 Score=30.89 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=24.1
Q ss_pred HHhHhhhhhcCCCCCccCHHHHHHhhccC
Q psy2690 84 CGKKLPRHCDANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 84 c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~ 112 (125)
.....|+.+|.+.||-|++.|....|.+=
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 35678899999999999999988776553
No 118
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=61.79 E-value=15 Score=29.98 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=33.9
Q ss_pred CCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhh
Q psy2690 59 KNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCL 109 (125)
Q Consensus 59 ~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl 109 (125)
.+|.||++|-..+++... ...++..++.|+++++ ||.+||-..+
T Consensus 299 R~G~itReeal~~v~~~d-~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYD-GEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 479999999998888753 2345678999999887 7888887654
No 119
>KOG0917|consensus
Probab=60.53 E-value=39 Score=27.73 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCCCchhhHHHchhcccCC-CCCCcccHHHHHHHHHH
Q psy2690 7 HKKREFLKGLMEYFMNTMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDL-DKNKVLEQEEWKNFRNL 74 (125)
Q Consensus 7 ~~~~~f~~rL~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~F~~lD~-n~dG~Ld~~EL~~~~~~ 74 (125)
.+-.+|+.-||+|+-....+..... .++.+..-...++.....+|...|+ |+-|..++.=++.|...
T Consensus 48 ~e~rk~lsgLm~~lealkkqlaDne-aitne~~aqaHiE~fAlklF~~ADKqdragr~dk~vvkaFYtA 115 (338)
T KOG0917|consen 48 PECRKFLSGLMDQLEALKKQLADNE-AITNEIVAQAHIENFALKLFLYADKQDRAGRFDKNVVKAFYTA 115 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchh-hhhhchHHHHHHHHHHHHHHHhhchhhhhcccchhHHHHHHHH
Confidence 4567899999999988776433221 1111111233466777889999999 99999999988887443
No 120
>KOG1707|consensus
Probab=59.42 E-value=7.8 Score=34.58 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=37.9
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHH
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLN 107 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~ 107 (125)
+-|.-+|..+|.|+||-|+..||..+....-..+-.+ -.+...-=.+..|-++++=|+.
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~---~~~~~~t~~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTS---SPYKDSTVKNERGWLTLNGFLS 373 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCC---CcccccceecccceeehhhHHH
Confidence 4577789999999999999999999987642111000 0111112224677888776653
No 121
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=55.58 E-value=12 Score=26.60 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=22.6
Q ss_pred hHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCCc
Q psy2690 81 LRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTNR 115 (125)
Q Consensus 81 ~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~~ 115 (125)
++...+.+...+=+|.-|+|.|.||+.-|..+...
T Consensus 5 tDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e~~~ 39 (118)
T PF08976_consen 5 TDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSEKAA 39 (118)
T ss_dssp -HHHHHHHHTTS-B-TTS-EEHHHHHHHT------
T ss_pred cHHHhhhhhhhCcCCccCCEeHHHHHHHccccccc
Confidence 45568889999999999999999999999865433
No 122
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=54.46 E-value=16 Score=21.85 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCC
Q psy2690 59 KNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANN 96 (125)
Q Consensus 59 ~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~ 96 (125)
.+|.|+-.|++..+. .+.+.+-.+++++|..+
T Consensus 7 ~~~~itv~~~rd~lg------~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 7 KNGEITVAEFRDLLG------LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TTSSBEHHHHHHHHT------S-HHHHHHHHHHHHHTT
T ss_pred cCCcCcHHHHHHHHC------ccHHHHHHHHHHHhccC
Confidence 489999999998854 57888999999999654
No 123
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=54.12 E-value=3.2 Score=26.73 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=38.3
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCC---CccCHHHHHHh
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANND---KKISLSEWLNC 108 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~D---g~Is~~Ef~~c 108 (125)
+-+.-.|+.+ .++.++|+..||+..+..= ..+-|+..+-.+-+.++| |.+.|..|+.-
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe----~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTPE----QAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-CC----CHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCcH----HHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 3457789999 8899999999999874421 236677777666554322 66778877653
No 124
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=52.87 E-value=42 Score=21.87 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=9.9
Q ss_pred CCcccHHHHHHHHHHHH
Q psy2690 60 NKVLEQEEWKNFRNLIS 76 (125)
Q Consensus 60 dG~Ld~~EL~~~~~~l~ 76 (125)
||.++..|...+...+.
T Consensus 13 DG~v~~~E~~~i~~~l~ 29 (106)
T cd07316 13 DGRVSEAEIQAARALMD 29 (106)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 56666666666655544
No 125
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=45.70 E-value=28 Score=22.33 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=18.7
Q ss_pred HhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 85 GKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 85 ~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
+.-+..+|+.=+.++||.+||..-+.
T Consensus 27 ~~~l~~~Y~~~k~~kIsR~~fvr~lR 52 (70)
T PF12174_consen 27 MDLLQKHYEEFKKKKISREEFVRKLR 52 (70)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 56666667777788888888876553
No 126
>KOG3866|consensus
Probab=45.09 E-value=11 Score=31.52 Aligned_cols=50 Identities=12% Similarity=-0.007 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCC
Q psy2690 64 EQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNT 113 (125)
Q Consensus 64 d~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~ 113 (125)
|+..|+.+-.......+..---+.||..+|+|+||.+.-.|....|.+..
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkEL 274 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKEL 274 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHH
Confidence 34455555443321112222357899999999999999999988887643
No 127
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=42.76 E-value=45 Score=19.11 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=32.0
Q ss_pred chhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhh
Q psy2690 43 GDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRH 91 (125)
Q Consensus 43 ~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~ 91 (125)
.-..+|.-.|.. +.+.+..|+..+...+. .+...|..+|..
T Consensus 10 ~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (59)
T cd00086 10 EQLEELEKEFEK-----NPYPSREEREELAKELG---LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 355778888888 77999999999988774 566778888753
No 128
>PLN02222 phosphoinositide phospholipase C 2
Probab=41.49 E-value=66 Score=28.70 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=48.2
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh-hhHHHHhHhhhhh-cCCCCCccCHHHHHHhhccCCCc
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK-QLRRCGKKLPRHC-DANNDKKISLSEWLNCLNVNTNR 115 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~-~~e~c~~~f~~~c-D~d~Dg~Is~~Ef~~cl~~~~~~ 115 (125)
+...+.-+|..|=. ++.|+.++|..++...+... .....+..++... ..-+.+.++++.|..+|....+.
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~~n~ 94 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGDNNP 94 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCCCCC
Confidence 44567888888853 57999999999998876421 1233344555543 22356789999999999875543
No 129
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=41.14 E-value=93 Score=21.96 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=41.0
Q ss_pred HHchhcccCCCC--CCcccHHHHHHHHHHHHhh-----h-----h-------hHHHHhHhhhhhcCCCCCccCHHHHHHh
Q psy2690 48 ATWNFGTLDLDK--NKVLEQEEWKNFRNLISQQ-----K-----Q-------LRRCGKKLPRHCDANNDKKISLSEWLNC 108 (125)
Q Consensus 48 l~w~F~~lD~n~--dG~Ld~~EL~~~~~~l~~~-----~-----~-------~e~c~~~f~~~cD~d~Dg~Is~~Ef~~c 108 (125)
+...|.....+. |..|+-.|+..++..++.. + + .+-++.=++.-+|..+.|+|+.-+|...
T Consensus 43 v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kva 122 (127)
T PF09068_consen 43 VIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVA 122 (127)
T ss_dssp HHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHH
T ss_pred HHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHH
Confidence 455677766644 4779999999999998831 0 1 1335556777899999999999998766
Q ss_pred h
Q psy2690 109 L 109 (125)
Q Consensus 109 l 109 (125)
|
T Consensus 123 L 123 (127)
T PF09068_consen 123 L 123 (127)
T ss_dssp H
T ss_pred H
Confidence 5
No 130
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=40.99 E-value=16 Score=25.88 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=23.2
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHH
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNL 74 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~ 74 (125)
..-.+.|..+.||..+.|.|+--.++..+..
T Consensus 95 ~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 95 VDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3456899999999999999999988877643
No 131
>PRK05849 hypothetical protein; Provisional
Probab=40.45 E-value=89 Score=28.89 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=38.4
Q ss_pred CCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccC-CCc--cCCCCCCCCC
Q psy2690 59 KNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVN-TNR--ANRSTPDESP 125 (125)
Q Consensus 59 ~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~-~~~--~~~~~~~~~~ 125 (125)
..|.++.+|+..++..+.- .+..-...+... |.++++||+.-.+.. .++ ....+.++.|
T Consensus 471 ~~g~~s~~~~~~f~~s~~T--v~~~~~~D~~~l------g~l~~~~FL~~YGHR~~ge~DI~sprw~EdP 532 (783)
T PRK05849 471 EIGALSQEELDAFLNSLNT--VSKELSKDLNSL------GELSKDEFLKRYGHLRPGTYDILSPRYDEDP 532 (783)
T ss_pred HcCCCCHHHHHHHHHHhhH--hHHHHHHHHHHH------hccCHHHHHHHhCCCCCCceecCCCCcccCh
Confidence 4688899999999888853 233444555433 789999999887752 222 4444444444
No 132
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=40.09 E-value=14 Score=29.49 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=14.7
Q ss_pred hcccCCCCCCcccHHH
Q psy2690 52 FGTLDLDKNKVLEQEE 67 (125)
Q Consensus 52 F~~lD~n~dG~Ld~~E 67 (125)
|..||.|+||.|+..|
T Consensus 92 f~~yD~dgDG~vd~~d 107 (286)
T TIGR03296 92 FDRYDLDGDGNFDEPD 107 (286)
T ss_pred cccccccCCCccCCCC
Confidence 9999999999999865
No 133
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=39.74 E-value=67 Score=23.29 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=33.8
Q ss_pred hhcccCCCCCCcccHHHHHHHHHHHHh--hhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhc
Q psy2690 51 NFGTLDLDKNKVLEQEEWKNFRNLISQ--QKQLRRCGKKLPRHCDANNDKKISLSEWLNCLN 110 (125)
Q Consensus 51 ~F~~lD~n~dG~Ld~~EL~~~~~~l~~--~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~ 110 (125)
.|+.+=..+...++..-+..+++...- ......-++.+|..+=..+..+|+|++|..+|.
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 344444555666666666666655310 012344566667666555666788888887775
No 134
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=39.06 E-value=16 Score=20.41 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=7.9
Q ss_pred ccCCCCCCc
Q psy2690 54 TLDLDKNKV 62 (125)
Q Consensus 54 ~lD~n~dG~ 62 (125)
.||+|+||.
T Consensus 26 ~LDrD~DGi 34 (37)
T PF05901_consen 26 KLDRDGDGI 34 (37)
T ss_pred cccCCCCCC
Confidence 789999995
No 135
>KOG4578|consensus
Probab=39.04 E-value=19 Score=30.35 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.2
Q ss_pred HHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
.+.+|..-|.|+|-+|+..||+.++..-
T Consensus 372 ~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 372 SRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred hhhcchhcccCCCceecHHHHhhhhccc
Confidence 3457999999999999999999997754
No 136
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=38.48 E-value=45 Score=20.16 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q psy2690 2 KGCPGHKKREFLKGLMEYFMNTML 25 (125)
Q Consensus 2 ~~C~~~~~~~f~~rL~~wf~~~~~ 25 (125)
-.|+..+...|+..|++.+..-+.
T Consensus 6 a~cYp~~~~~Fp~~L~~lL~~~~~ 29 (52)
T PF08158_consen 6 AHCYPKETKDFPQELIDLLRNHHT 29 (52)
T ss_pred ccccHHHHHHHHHHHHHHHHhccc
Confidence 369999999999999999887664
No 137
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=37.36 E-value=44 Score=20.55 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=31.2
Q ss_pred hcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCC
Q psy2690 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANN 96 (125)
Q Consensus 52 F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~ 96 (125)
|..+-.+..|.++..|...+...+.....+...+...+++|=.++
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~~~ 46 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALENN 46 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 555666778999999999998887643456666777778877543
No 138
>KOG1954|consensus
Probab=36.85 E-value=37 Score=29.30 Aligned_cols=55 Identities=20% Similarity=0.018 Sum_probs=38.4
Q ss_pred HchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHH
Q psy2690 49 TWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLN 107 (125)
Q Consensus 49 ~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~ 107 (125)
..+|..+- .-||+|+-.--+.-+-.- ..+....-++.+..|.|+||.+.-+||.-
T Consensus 447 de~fy~l~-p~~gk~sg~~ak~~mv~s---klpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 447 DEIFYTLS-PVNGKLSGRNAKKEMVKS---KLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred Hhhhhccc-ccCceeccchhHHHHHhc---cCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 33465554 568899876655543321 23555677788999999999999999963
No 139
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=35.90 E-value=69 Score=20.23 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=11.2
Q ss_pred CCcccHHHHHHHHHHHHh
Q psy2690 60 NKVLEQEEWKNFRNLISQ 77 (125)
Q Consensus 60 dG~Ld~~EL~~~~~~l~~ 77 (125)
||.|+.+|+..+...+..
T Consensus 13 DG~i~~~E~~~i~~~~~~ 30 (104)
T cd07177 13 DGRVDEEEIAAIEALLRR 30 (104)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 666666666666655543
No 140
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=33.59 E-value=48 Score=21.17 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=13.3
Q ss_pred CCCcccHHHHHHHHHH
Q psy2690 59 KNKVLEQEEWKNFRNL 74 (125)
Q Consensus 59 ~dG~Ld~~EL~~~~~~ 74 (125)
..|++.-+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 5799999999998764
No 141
>KOG0998|consensus
Probab=33.53 E-value=21 Score=33.03 Aligned_cols=63 Identities=10% Similarity=0.037 Sum_probs=53.4
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
....-+|..+|..++|.|+..|...++..- +.+.+..-.+...+|..+-|.+...+|..++..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s---~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKS---GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcc---ccchhhhhccccccccccCCccccccccccchH
Confidence 567788999999999999999999986642 356666777788999999999999999998874
No 142
>PLN02952 phosphoinositide phospholipase C
Probab=32.82 E-value=81 Score=28.27 Aligned_cols=55 Identities=5% Similarity=0.018 Sum_probs=35.8
Q ss_pred CCCcccHHHHHHHHHHHHhh-hhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCC
Q psy2690 59 KNKVLEQEEWKNFRNLISQQ-KQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTN 114 (125)
Q Consensus 59 ~dG~Ld~~EL~~~~~~l~~~-~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~ 114 (125)
++|.|+-+|...+.+.+... ..+...+..+|..+-. +++.|+.++|...|...-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCC
Confidence 46888888888887776411 1134456666666643 4467888888888765443
No 143
>KOG4004|consensus
Probab=32.22 E-value=35 Score=26.84 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=26.2
Q ss_pred chhhHHHchhcccCCCCCCcccHHHHHHHHH
Q psy2690 43 GDEQVATWNFGTLDLDKNKVLEQEEWKNFRN 73 (125)
Q Consensus 43 ~~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~ 73 (125)
..+.-..-.|.--|.|+||+|+..|+..++.
T Consensus 219 pme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 219 PMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred cHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 3555667789999999999999999998865
No 144
>KOG3355|consensus
Probab=31.25 E-value=46 Score=25.26 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccCCCccCCC
Q psy2690 64 EQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTNRANRS 119 (125)
Q Consensus 64 d~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~~~~~~ 119 (125)
.+.++++++..+...-+=..|++.|-+..+.|.=..=|.+||...+....+.++++
T Consensus 96 qk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~C~vHN~VNek 151 (177)
T KOG3355|consen 96 QKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWLCHVHNKVNEK 151 (177)
T ss_pred HHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 35667777666643334478999999999999999999999999888766665543
No 145
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=31.22 E-value=84 Score=22.60 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHHHhhhh-------hH--HHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 63 LEQEEWKNFRNLISQQKQ-------LR--RCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 63 Ld~~EL~~~~~~l~~~~~-------~e--~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.|.+|+..++++.++.+. .+ ..++..+ .+|.||..||+..|.+
T Consensus 5 ~s~~~~~~vI~AaYrQVf~~~~~~~~er~~~lESql------rng~IsVreFVr~La~ 56 (131)
T PF00427_consen 5 SSEEELEAVIRAAYRQVFGNDHPMESERLISLESQL------RNGQISVREFVRALAK 56 (131)
T ss_dssp S-HHHHHHHHHHHHHHHHSSSSSHCSHHTHHHHHHH------HTTSS-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhcCccchhhhccchHHHHH------HcCCCcHHHHHHHHHc
Confidence 567888888877765332 11 1234444 6899999999988775
No 146
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=31.16 E-value=39 Score=19.54 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=17.3
Q ss_pred HHchhcccCC--CCCCcccHHHHHHHHHH
Q psy2690 48 ATWNFGTLDL--DKNKVLEQEEWKNFRNL 74 (125)
Q Consensus 48 l~w~F~~lD~--n~dG~Ld~~EL~~~~~~ 74 (125)
+.-+|.+|=. ....+|++.||+.+++.
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3445666642 34567888888888653
No 147
>PLN02952 phosphoinositide phospholipase C
Probab=30.77 E-value=1e+02 Score=27.69 Aligned_cols=65 Identities=8% Similarity=0.095 Sum_probs=41.8
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh-hhHHHHhH----hhhhhc---CCCCCccCHHHHHHhhcc
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK-QLRRCGKK----LPRHCD---ANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~-~~e~c~~~----f~~~cD---~d~Dg~Is~~Ef~~cl~~ 111 (125)
..+.-+|..|=. +++.|+.++|..|+...+... .....+.. |+.... ..+.+.++++.|..+|..
T Consensus 38 ~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 38 DDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred HHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 557888888843 557899999999999876421 11222233 333221 123456999999998864
No 148
>PLN02228 Phosphoinositide phospholipase C
Probab=30.37 E-value=1.6e+02 Score=26.26 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=45.2
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh-hhHHHHhHhhhhhcCC----CCCccCHHHHHHhhccCCC
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK-QLRRCGKKLPRHCDAN----NDKKISLSEWLNCLNVNTN 114 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~-~~e~c~~~f~~~cD~d----~Dg~Is~~Ef~~cl~~~~~ 114 (125)
..|.-+|..|=. ++.|+.+++..++...++.. .....+..++..+-.. ..|.++++.|..+|....+
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~~n 95 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSDTN 95 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCccc
Confidence 456778887753 36899999999998875321 1233355566554322 3467999999999876544
No 149
>PLN02230 phosphoinositide phospholipase C 4
Probab=29.92 E-value=1.4e+02 Score=26.86 Aligned_cols=66 Identities=8% Similarity=0.057 Sum_probs=43.5
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh--hhHHHHhHhhhhh-------cCCCCCccCHHHHHHhhccC
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK--QLRRCGKKLPRHC-------DANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~--~~e~c~~~f~~~c-------D~d~Dg~Is~~Ef~~cl~~~ 112 (125)
..+.-+|..|= ++++.++.++|..++...+... .....+..++..+ ..-+.+.++++.|..+|...
T Consensus 29 ~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 29 ADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred HHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 55788899994 4448999999999998875211 1223334444321 12235579999999988764
No 150
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=29.46 E-value=21 Score=24.59 Aligned_cols=15 Identities=20% Similarity=0.009 Sum_probs=12.5
Q ss_pred cccCCCCCCcccHHH
Q psy2690 53 GTLDLDKNKVLEQEE 67 (125)
Q Consensus 53 ~~lD~n~dG~Ld~~E 67 (125)
-.+|.|+||+||...
T Consensus 59 v~hD~N~NgklD~n~ 73 (112)
T PF09912_consen 59 VFHDENGNGKLDTNF 73 (112)
T ss_pred EEEeCCCCCcCCcCC
Confidence 357999999999865
No 151
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=27.49 E-value=98 Score=17.82 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=30.3
Q ss_pred hhhHHHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhh
Q psy2690 44 DEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPR 90 (125)
Q Consensus 44 ~~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~ 90 (125)
-..+|.-.|.. +.+++..+...+...+. .+...|..+|.
T Consensus 11 q~~~L~~~f~~-----~~~p~~~~~~~la~~l~---l~~~~V~~WF~ 49 (57)
T PF00046_consen 11 QLKVLEEYFQE-----NPYPSKEEREELAKELG---LTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHHH-----SSSCHHHHHHHHHHHHT---SSHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hcccccccccccccccc---ccccccccCHH
Confidence 45667777873 89999999999988774 56777888875
No 152
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=27.09 E-value=1.8e+02 Score=19.03 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=36.0
Q ss_pred hcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHh---HhhhhhcCCCCCccCHHHHHHhhccCCCcc
Q psy2690 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGK---KLPRHCDANNDKKISLSEWLNCLNVNTNRA 116 (125)
Q Consensus 52 F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~---~f~~~cD~d~Dg~Is~~Ef~~cl~~~~~~~ 116 (125)
|...|.. ...++..||..+...+.. ..+.-+. ..++..+.+....+|.+||...+...+.-.
T Consensus 26 ~~~idi~-~~~~~~~~l~~~~~~~~~--~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Li 90 (105)
T cd02977 26 YEFIDYL-KEPPTKEELKELLAKLGL--GVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLI 90 (105)
T ss_pred cEEEeec-cCCCCHHHHHHHHHhcCC--CHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCee
Confidence 5566655 355678888888776531 1111111 222333433346889999999988776543
No 153
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=26.95 E-value=74 Score=19.55 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=29.6
Q ss_pred hcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCH
Q psy2690 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISL 102 (125)
Q Consensus 52 F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~ 102 (125)
|..+..+..+.|+..|+..+..-+...+.+..-+...+++|=.+ |+.++
T Consensus 2 ~~~~e~~~gr~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a~~~--~~~~~ 50 (73)
T TIGR01446 2 YDFFEENFGRMLSPFEMEDLKYWLDEFGNSPELIKEALKEAVSN--NKANY 50 (73)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCH
Confidence 44555566667888888888776654433344566666666543 44554
No 154
>KOG4347|consensus
Probab=26.41 E-value=68 Score=29.11 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=26.3
Q ss_pred hHHHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 81 LRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 81 ~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
+..-+..+|+..|.+++|.|++.+++.+|..
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~ 583 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSI 583 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHH
Confidence 3445778888999999999999999998874
No 155
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=26.11 E-value=19 Score=23.59 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=4.1
Q ss_pred CCCccCHHH
Q psy2690 96 NDKKISLSE 104 (125)
Q Consensus 96 ~Dg~Is~~E 104 (125)
-||.++-.|
T Consensus 90 aDG~~~~~E 98 (111)
T cd07176 90 ADGEVDPEE 98 (111)
T ss_pred ccCCCCHHH
Confidence 444444444
No 156
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=25.64 E-value=57 Score=23.92 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=26.5
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHh
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQ 77 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~ 77 (125)
+.+.-.-+.+|.++.||||-+|||+++-.+..
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q 100 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQIQQ 100 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHHHHH
Confidence 34555688899999999999999999887753
No 157
>KOG2419|consensus
Probab=25.38 E-value=79 Score=29.14 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=49.3
Q ss_pred HHchhcccCCCCCCcccHHHHHHHHHHHHhhhhhH--------HHHhHhhhhhcCCCC----------------------
Q psy2690 48 ATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLR--------RCGKKLPRHCDANND---------------------- 97 (125)
Q Consensus 48 l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e--------~c~~~f~~~cD~d~D---------------------- 97 (125)
....|...|.+-|++++-.|+..+...+...+... ..-..++...|+++|
T Consensus 439 ~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s 518 (975)
T KOG2419|consen 439 AKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKS 518 (975)
T ss_pred hhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccc
Confidence 34568899999999999999999988876432110 113456677899999
Q ss_pred -CccCHHHHHHhhc
Q psy2690 98 -KKISLSEWLNCLN 110 (125)
Q Consensus 98 -g~Is~~Ef~~cl~ 110 (125)
|.++.+|...|+.
T Consensus 519 ~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 519 FGVVTVDELVALLA 532 (975)
T ss_pred cCeeEHHHHHHHHH
Confidence 9999999999988
No 158
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.65 E-value=88 Score=16.58 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=12.1
Q ss_pred CCcccHHHHHHHHHHH
Q psy2690 60 NKVLEQEEWKNFRNLI 75 (125)
Q Consensus 60 dG~Ld~~EL~~~~~~l 75 (125)
+|.||.+|+....+.+
T Consensus 14 ~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 14 KGEISEEEYEQKKARL 29 (31)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 6888888888776654
No 159
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=24.18 E-value=1e+02 Score=22.46 Aligned_cols=48 Identities=10% Similarity=-0.008 Sum_probs=33.8
Q ss_pred hhhHHHchhcccCC-CCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhh
Q psy2690 44 DEQVATWNFGTLDL-DKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRH 91 (125)
Q Consensus 44 ~~~~l~w~F~~lD~-n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~ 91 (125)
..+...|.+..+=. .-||.++..|+..+...+.....+....+..++.
T Consensus 20 ~~~~~~~~~~Ll~iAkADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~ 68 (150)
T cd07311 20 NQDKLAYLKALLVCAKGDGVISPEERDWAIGYAAARGGDADMVEELKEY 68 (150)
T ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34677888888776 8899999999998888765432333345555554
No 160
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.55 E-value=1.3e+02 Score=16.10 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHhHhhhh
Q psy2690 66 EEWKNFRNLISQQKQLRRCGKKLPRH 91 (125)
Q Consensus 66 ~EL~~~~~~l~~~~~~e~c~~~f~~~ 91 (125)
+|+..+++..+..+.+...++.|++.
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46777777766656566667777653
No 161
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=22.41 E-value=92 Score=20.19 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=35.7
Q ss_pred CCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCccCHHHHHHhhccC
Q psy2690 58 DKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVN 112 (125)
Q Consensus 58 n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~~ 112 (125)
=++|.|+.+|...+... ..+...++.++.... .-|...+.-|..||...
T Consensus 25 ~~~~Vit~e~~~~I~a~----~T~~~kar~Lld~l~--~kG~~A~~~F~~~L~e~ 73 (82)
T cd08330 25 HGKKVITQEQYSEVRAE----KTNQEKMRKLFSFVR--SWGASCKDIFYQILREE 73 (82)
T ss_pred HHCCCCCHHHHHHHHcC----CCcHHHHHHHHHHHH--ccCHHHHHHHHHHHHHh
Confidence 35689999999888653 133455788887554 67889999999999543
No 162
>KOG4403|consensus
Probab=22.33 E-value=98 Score=27.09 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=39.6
Q ss_pred hHHHchhcccCCCCCCcccHHHHHHHHHHHHhhh-hhHHHHhHhhhhhcCCCCCccCHHHHH
Q psy2690 46 QVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK-QLRRCGKKLPRHCDANNDKKISLSEWL 106 (125)
Q Consensus 46 ~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~-~~e~c~~~f~~~cD~d~Dg~Is~~Ef~ 106 (125)
+.+.-+..++|-|.||-|+.+|=..|++.=++.. ..+...+.|-. .|.-||.++.-
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~-----dD~~ItVedLW 124 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG-----DDKHITVEDLW 124 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC-----CccceeHHHHH
Confidence 4467789999999999999999999988644322 22333445542 57788887743
No 163
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=22.01 E-value=35 Score=18.56 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=13.5
Q ss_pred hHhhhhhcCCCCCccCHH
Q psy2690 86 KKLPRHCDANNDKKISLS 103 (125)
Q Consensus 86 ~~f~~~cD~d~Dg~Is~~ 103 (125)
+.++.+=|+|+|-+|+.+
T Consensus 2 ~~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIE 19 (30)
T ss_pred hhHhhccccCCCcEEEEe
Confidence 345677799999998854
No 164
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=21.84 E-value=2.1e+02 Score=22.64 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=25.5
Q ss_pred CCCCcccHHHHHHHHHHHHh-hhhhH---HHHhHhhhhhcCCCCCccCHHHHHHhhcc
Q psy2690 58 DKNKVLEQEEWKNFRNLISQ-QKQLR---RCGKKLPRHCDANNDKKISLSEWLNCLNV 111 (125)
Q Consensus 58 n~dG~Ld~~EL~~~~~~l~~-~~~~e---~c~~~f~~~cD~d~Dg~Is~~Ef~~cl~~ 111 (125)
.-||.++..|+..+ +.+.. ...+. +.+..+|+.- +....++.+|+.-|..
T Consensus 67 kADG~Vse~Ei~~~-~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 67 KAKGRVTEADIRIA-SQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRS 120 (267)
T ss_pred hcCCCcCHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHH
Confidence 55788888888843 33321 11111 2244444332 2333667777665543
No 165
>KOG1954|consensus
Probab=21.66 E-value=96 Score=26.91 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=25.7
Q ss_pred hhHHHchhcccCCCCCCcccHHHHHHHHHHH
Q psy2690 45 EQVATWNFGTLDLDKNKVLEQEEWKNFRNLI 75 (125)
Q Consensus 45 ~~~l~w~F~~lD~n~dG~Ld~~EL~~~~~~l 75 (125)
..+|..+++..|.|.||.|+.+|+.-.-..+
T Consensus 476 nsvlgkiwklad~d~dg~ld~eefala~hli 506 (532)
T KOG1954|consen 476 NSVLGKIWKLADIDKDGMLDDEEFALANHLI 506 (532)
T ss_pred hhHHHhhhhhhcCCcccCcCHHHHHHHHHHH
Confidence 3678888999999999999999987664443
No 166
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=20.82 E-value=50 Score=19.89 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=11.0
Q ss_pred CCCccCHHHHHHh
Q psy2690 96 NDKKISLSEWLNC 108 (125)
Q Consensus 96 ~Dg~Is~~Ef~~c 108 (125)
.+|.||.+||-.=
T Consensus 20 a~GrL~~~Ef~~R 32 (53)
T PF08044_consen 20 AEGRLSLDEFDER 32 (53)
T ss_pred HCCCCCHHHHHHH
Confidence 6899999999753
No 167
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=20.68 E-value=44 Score=22.22 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=38.6
Q ss_pred hhcccCCCCCCcccHHHHHHHHHHHHhhhhhHHHHhHhhhhhcCCCCCc-c-CHHHHHHhhccC
Q psy2690 51 NFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKK-I-SLSEWLNCLNVN 112 (125)
Q Consensus 51 ~F~~lD~n~dG~Ld~~EL~~~~~~l~~~~~~e~c~~~f~~~cD~d~Dg~-I-s~~Ef~~cl~~~ 112 (125)
.|.++=.+.+-.-+-+|+..++..+..... +.-.+.++|.+||=- | +=++|..++...
T Consensus 10 EfRRFsl~r~~~~~f~ef~~ll~~lH~l~~----~~f~i~Y~D~~gDLLPInNDdNf~kAlssa 69 (80)
T cd06403 10 EFRRFSLDRNKPGKFEDFYKLLEHLHHIPN----VDFLIGYTDPHGDLLPINNDDNFLKALSSA 69 (80)
T ss_pred eEEEEEeccccCcCHHHHHHHHHHHhCCCC----CcEEEEEeCCCCCEecccCcHHHHHHHHcC
Confidence 355555555667888999999998864322 566889999866631 2 345677777644
No 168
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=20.16 E-value=31 Score=21.44 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=25.3
Q ss_pred CCCchhhHHHchhcccCCCCCCcccHHHHHH
Q psy2690 40 FSTGDEQVATWNFGTLDLDKNKVLEQEEWKN 70 (125)
Q Consensus 40 ~~~~~~~~l~w~F~~lD~n~dG~Ld~~EL~~ 70 (125)
.+......++-.|+.+|+.+=..||.+|+-+
T Consensus 29 ~~i~i~s~~~~l~~~l~k~~ys~ld~ee~me 59 (62)
T PF12133_consen 29 IQIIISSIVRQLFNPLDKKNYSELDDEEPME 59 (62)
T ss_pred HHhHHHHHHHHHhcccccccccccCcccccc
Confidence 4556778899999999998888999888754
Done!