RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2690
(125 letters)
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 64.9 bits (157), Expect = 1e-14
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 4/116 (3%)
Query: 3 GCPGHKKREFLKGLMEYFMNTMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDLDK-NK 61
K++ +K + E A + W FG LD +
Sbjct: 34 NLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDG 93
Query: 62 VLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTNRAN 117
L E R + + C + CD +NDK I+L EW C + +
Sbjct: 94 YLSHTELAPLRAPL---IPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDID 146
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 61.5 bits (148), Expect = 8e-13
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 7/113 (6%)
Query: 4 CPGHKKREFLKGLMEYF---MNTMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDLDK- 59
+++ E L E + + + + W FG LD
Sbjct: 110 VTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPEKNYNMYIFPVHWQFGQLDQHPI 169
Query: 60 NKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVN 112
+ L E R + + C + CD +NDK I+L EW C +
Sbjct: 170 DGYLSHTELAPLR---APLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK 219
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 36.6 bits (84), Expect = 0.001
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 20 FMNTMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDLDKNKVLEQEEWKNF-RNLISQQ 78
+ Q+N + + ++ F D+ + LE E F ++++
Sbjct: 170 LARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELV 229
Query: 79 K------QLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTN 114
+ L + + L HCD N D KI SE CL +
Sbjct: 230 RPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLGLKHK 271
Score = 28.5 bits (63), Expect = 0.55
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 8/105 (7%)
Query: 17 MEYFMNTMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDLDKNKVLEQEEWKNF-RNLI 75
+E N +L Q+ + + D D + + E KNF ++L
Sbjct: 76 IEELANMILPQEENFLLIFRREAPLDNSVEFMK-IWRKYDADSSGYISAAELKNFLKDLF 134
Query: 76 SQQKQ------LRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTN 114
Q K+ L + + D N D ++ L++ L + N
Sbjct: 135 LQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQEN 179
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 34.4 bits (79), Expect = 0.004
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 10 REFLKGLMEYFMNTMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDLDKNKVLEQEEWK 69
R F++ L +F ++K+ + E + F DLDK+ + ++E
Sbjct: 81 RGFMRTLA-HFRPIEDNEKSKDVNGPEP---LNSRSNKLHFAFRLYDLDKDDKISRDELL 136
Query: 70 NFRNLISQQK----QLRRCGKKLPRHCDANNDKKISLSEWLNCL 109
++ QL + + D + D IS +E++ L
Sbjct: 137 QVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 30.9 bits (70), Expect = 0.062
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 40 FSTGD-EQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQK-----------QLRRCGKK 87
G + W F D++K+ + +EE + I R+
Sbjct: 85 LLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDV 144
Query: 88 LPRHCDANNDKKISLSEWLN 107
+ D N D ++L E+L
Sbjct: 145 FFQKMDKNKDGIVTLDEFLE 164
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 30.5 bits (69), Expect = 0.099
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 44 DEQVATWNFGTLDLDKNKVLEQEEW----KNFRNLISQQKQLRRCGKKLPRHCDANNDKK 99
D W+ + K +++ + K + + R D N D
Sbjct: 51 DSLTGVWDNFLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNN 110
Query: 100 ISLSEWLNCL 109
IS E+
Sbjct: 111 ISRDEYGIFF 120
Score = 27.0 bits (60), Expect = 1.3
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 31 TTSATEEGTFSTGDEQVATWNFGTLDLDKNKVLEQEEWKN-FRNLISQQKQLRRCGKKLP 89
+ + E F +D +++ + ++E+ F L + +
Sbjct: 79 MKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAI- 137
Query: 90 RHCDANNDKKISLSEWL 106
D NND +SL E++
Sbjct: 138 ---DTNNDGLLSLEEFV 151
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 30.3 bits (68), Expect = 0.11
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEE-----------WKNFRNLISQQKQLRRCGKKLPRHCD 93
+ W F D++K+ + +EE + + ++ R+ + D
Sbjct: 124 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 183
Query: 94 ANNDKKISLSEWLNCLNVN 112
N D ++L E+L +
Sbjct: 184 KNKDGIVTLDEFLESCQED 202
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 30.4 bits (69), Expect = 0.11
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111
F D D N + +E ++ + K++ D+NND + E+ +
Sbjct: 432 FQKFDQDGNGKISVDE---LASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQK 488
Query: 112 NTNR 115
+
Sbjct: 489 LCSN 492
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 30.2 bits (68), Expect = 0.12
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEE-----------WKNFRNLISQQKQLRRCGKKLPRHCD 93
W F DLD N ++ +E + L + + K+ D
Sbjct: 98 NDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMD 157
Query: 94 ANNDKKISLSEWLN 107
N D +++L E+
Sbjct: 158 KNKDGQLTLEEFCE 171
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 30.2 bits (68), Expect = 0.14
Identities = 12/81 (14%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEE-----------WKNFRNLISQQKQLRRCGKKLPRHCD 93
++ W F D++K+ + +EE + ++ R+ + + D
Sbjct: 137 QEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMD 196
Query: 94 ANNDKKISLSEWLNCLNVNTN 114
N D +++ E++ + N
Sbjct: 197 KNKDGVVTIDEFIESCQKDEN 217
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 30.0 bits (68), Expect = 0.17
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCL 109
F D D + + E + K + D NND ++ E+ L
Sbjct: 424 FRMFDSDNSGKISSTE---LATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQML 478
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 29.5 bits (66), Expect = 0.20
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 55 LDLDKNKVLEQEEWKNFRNLISQ--------------QKQLRRCGKKLPRHCDANNDKKI 100
LD++ + ++ ++++ + Q L + L D N D +
Sbjct: 18 LDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVV 77
Query: 101 SLSEWLNCL 109
S E+L
Sbjct: 78 SWEEYLAMW 86
Score = 27.6 bits (61), Expect = 0.92
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 52 FGTLDLDKNKVLEQEEWKNF-RNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWL 106
F +D+ + +++ EE++N+ +N Q + + L+ +
Sbjct: 111 FKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVI----TDGGKVTFDLNRYK 162
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 29.4 bits (66), Expect = 0.21
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEE-----------WKNFRNLISQQKQLRRCGKKLPRHCD 93
++ W F DLD + + + E N L ++ + ++ D
Sbjct: 98 DEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMD 157
Query: 94 ANNDKKISLSEWLN 107
N D K++L E+
Sbjct: 158 KNADGKLTLQEFQE 171
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 29.7 bits (67), Expect = 0.25
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111
F D DK+ + +EE NL + + D N D I E+++ ++
Sbjct: 441 FNLFDTDKSGKITKEE---LANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHK 497
Query: 112 NTNRAN 117
+
Sbjct: 498 ICDHKT 503
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 29.0 bits (65), Expect = 0.32
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 55 LDLDKNKVLEQEEWKNFRNLISQ--------------QKQLRRCGKKLPRHCDANNDKKI 100
D + + V+E ++++ I + L+ L ++ D N D+++
Sbjct: 22 YDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQV 81
Query: 101 SLSEWLN 107
+ EWL
Sbjct: 82 TKEEWLK 88
Score = 27.9 bits (62), Expect = 0.79
Identities = 4/56 (7%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 52 FGTLDLDKNKVLEQEEWKNF-RNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWL 106
F D + ++++ E+ + + L ++ +
Sbjct: 115 FDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTL----SDGGKTMVTREIFA 166
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 28.8 bits (64), Expect = 0.36
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEE-------------WKNFRNLISQQKQLRRCGKKLPRH 91
Q W F D+D N + + E ++ + L + + +K+ ++
Sbjct: 106 NQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKY 165
Query: 92 CDANNDKKISLSEWLN 107
N+D K++ E++
Sbjct: 166 FGKNDDDKLTEKEFIE 181
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 28.6 bits (64), Expect = 0.47
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 52 FGTLDLDKNKVLEQEEWK--------NFRNLISQQKQLRRCGKKLPRHCDANNDKKISLS 103
F T DLD + +E +E Q +++R + H +
Sbjct: 42 FDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLRE 101
Query: 104 EWLN 107
+W+
Sbjct: 102 DWVE 105
Score = 24.8 bits (54), Expect = 7.9
Identities = 9/90 (10%), Positives = 23/90 (25%), Gaps = 15/90 (16%)
Query: 23 TMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLR 82
E + ++ + LD D + ++ +E K ++
Sbjct: 105 EANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTM---------MK 155
Query: 83 RCG------KKLPRHCDANNDKKISLSEWL 106
D + K+ +E +
Sbjct: 156 AFDVPQEAAYTFFEKADTDKSGKLERTELV 185
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 28.2 bits (63), Expect = 0.54
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 14/70 (20%)
Query: 52 FGTLDLDKNKVLEQEEWKNF-RNLISQ-------------QKQLRRCGKKLPRHCDANND 97
F T D D N +++ ++ + ++++ + L D + D
Sbjct: 10 FTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGD 69
Query: 98 KKISLSEWLN 107
++I+ E++
Sbjct: 70 QRITREEFVT 79
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 28.5 bits (63), Expect = 0.58
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEE-----------WKNFRNLISQQKQLRRCGKKLPRHCD 93
+ W F D++K+ + +EE I ++ ++ + D
Sbjct: 164 HEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMD 223
Query: 94 ANNDKKISLSEWLNCLNVNTN 114
N D +++ E+L + N
Sbjct: 224 RNQDGVVTIDEFLETCQKDEN 244
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 28.2 bits (63), Expect = 0.59
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 14/70 (20%)
Query: 52 FGTLDLDKNKVLEQEEWKNFRNLISQ--------------QKQLRRCGKKLPRHCDANND 97
F D D N LE+ +++ I++ + L + +D
Sbjct: 13 FDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSD 72
Query: 98 KKISLSEWLN 107
++ +++
Sbjct: 73 GSLTEEQFIR 82
Score = 26.3 bits (58), Expect = 3.0
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 9/87 (10%)
Query: 32 TSATEEGTFSTGDEQVATWN--FGTLDLDKNKVLEQEEWKNF-------RNLISQQKQLR 82
A + + ++ + + L +E++ + S + L
Sbjct: 42 KDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLG 101
Query: 83 RCGKKLPRHCDANNDKKISLSEWLNCL 109
K + CD N D +I+ E+ L
Sbjct: 102 PVVKGIVGMCDKNADGQINADEFAAWL 128
Score = 25.5 bits (56), Expect = 5.3
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 52 FGTLDLDKNKVLEQEEWKN-FRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLN 107
G D + + + +E+ L + + ++ D N + ++SL E L
Sbjct: 108 VGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQV----DTNGNGELSLDELLT 160
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 27.9 bits (62), Expect = 0.65
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEE-----------WKNFRNLISQQKQLRRCGKKLPRHCD 93
EQ W F DLD N + + E + + + + +K+ R D
Sbjct: 98 EQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMD 157
Query: 94 ANNDKKISLSEWLN 107
N D K+SL E++
Sbjct: 158 TNRDGKLSLEEFIR 171
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 28.1 bits (63), Expect = 0.86
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCL 109
F D D + + +E + Q+ + + D N D ++ +E++ L
Sbjct: 423 FKMFDKDGSGKISTKELFKLFSQADSSIQMEEL-ESIIEQVDNNKDGEVDFNEFVEML 479
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 27.5 bits (61), Expect = 1.1
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEE-----------WKNFRNLISQQKQLRRCGKKLPRHCD 93
E+ +W F DL+ + + +E + L + KK+ + D
Sbjct: 98 EEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMD 157
Query: 94 ANNDKKISLSEWLNCLNVNTN 114
N D I+L E+ V+ +
Sbjct: 158 KNEDGYITLDEFREGSKVDPS 178
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 27.4 bits (61), Expect = 1.1
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 52 FGTLDLDKNKVLEQEEWKNF------RNLISQQKQLRRCGKKLPRHCDANNDKKISLSEW 105
F D+D N +++ E N N ++ + D N D ++SL E+
Sbjct: 94 FKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEF 153
Query: 106 LN 107
+
Sbjct: 154 ME 155
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 27.1 bits (60), Expect = 1.3
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEEWKN-FRNLISQQ-------KQLRRCGKKLPRHCDANN 96
+ + + F D D + L +E+ L + ++++ + D +
Sbjct: 128 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 187
Query: 97 DKKISLSEWLN 107
D I+LSE+ +
Sbjct: 188 DGTINLSEFQH 198
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 27.0 bits (60), Expect = 1.5
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEEWKN-FRNLISQQK-------QLRRCGKKLPRHCDANN 96
+ + + F D D + L +E+ L + + ++++ + D +
Sbjct: 97 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 156
Query: 97 DKKISLSEWLNCL 109
D I+LSE+ + +
Sbjct: 157 DGTINLSEFQHVI 169
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 27.0 bits (60), Expect = 1.7
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 17/63 (26%)
Query: 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLP--------RHCDANNDKKISLS 103
+ +D DK+ + E+K F L+ G L D N + +IS
Sbjct: 108 YDCIDTDKDGYVSLPEFKAF---------LQAVGPDLTDDKAITCFNTLDFNKNGQISRD 158
Query: 104 EWL 106
E+L
Sbjct: 159 EFL 161
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 26.0 bits (57), Expect = 3.3
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 52 FGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEW 105
F +D N ++++EE+K + L + D N ++ E+
Sbjct: 136 FDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEF 189
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 25.6 bits (56), Expect = 3.5
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 51 NFGTLDLDKNKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNCL 109
+ L + K L +E +F ++ L++ L D N+D+++ E+ L
Sbjct: 26 DKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSL----DENSDQQVDFQEYAVFL 80
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 25.9 bits (57), Expect = 3.9
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 26/112 (23%)
Query: 10 REFLKGLMEYFMNTMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDLDKNKVLEQEEWK 69
EF++ L + + + F DL + +E+EE K
Sbjct: 94 GEFVRSL------GVFHPSAPV-------------HEKVKFAFKLYDLRQTGFIEREELK 134
Query: 70 NFRNLISQQ-------KQLRRCGKKLPRHCDANNDKKISLSEWLNCLNVNTN 114
+ + + K D ND KI + EW + +++N +
Sbjct: 135 EMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLNPS 186
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 25.5 bits (56), Expect = 4.4
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 50 WNFGTLDLDKNKVLEQEEWKN-----FRNLISQQKQLRRCGKKLPRHCDANNDKKISLSE 104
W F D D N +++ E + Q + D NND +++L E
Sbjct: 97 WYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEE 156
Query: 105 WLNCLNVNTN 114
++N + + +
Sbjct: 157 FINGMAKDQD 166
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 25.5 bits (56), Expect = 4.5
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 17/93 (18%)
Query: 23 TMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDLDKNKVLEQEEWKNFRNLISQQKQLR 82
+ T T F +D D+N + +EWK + +
Sbjct: 86 EGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAY---------TK 136
Query: 83 RCGKKLP--------RHCDANNDKKISLSEWLN 107
G R CD + ++ + E
Sbjct: 137 AAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 24.9 bits (54), Expect = 5.8
Identities = 12/76 (15%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 52 FGTLDLDKNKVLEQEEWKNF---------------RNLISQQKQLRRCGKKLPRHCDANN 96
F D++ + VL+++E + ++ +++ R + + ++ D N
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQ 85
Query: 97 DKKISLSEWLNCLNVN 112
D+ ++L E+L
Sbjct: 86 DRLVTLEEFLASTQRK 101
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 25.2 bits (55), Expect = 5.9
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 50 WNFGTLDLDKNKVLEQEEWKNFRNLISQQK-------QLRRCGKKLPRHCDANNDKKISL 102
++F DL + +E++E K + + K D +D KI
Sbjct: 126 FSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDK 185
Query: 103 SEWLNCLNVNTN 114
EW + + + +
Sbjct: 186 EEWRSLVLRHPS 197
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 25.1 bits (55), Expect = 6.3
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 10 REFLKGLMEYFMNTMLSQKNTTTSATEEGTFSTGDEQVATWNFGTLDLDKNKVLEQEEWK 69
F++ ++ +F T E S + F DLD++ + + E
Sbjct: 81 PGFVR-VLAHFRPVEDEDTETQDPKKPEPLNS--RRNKLHYAFQLYDLDRDGKISRHEML 137
Query: 70 NF-RNLISQQ---KQLRRCGKKLPRHCDANNDKKISLSEWLN 107
R ++ Q +QL + + D + D +S E+
Sbjct: 138 QVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK 179
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 24.9 bits (54), Expect = 7.7
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 44 DEQVATWNFGTLDLDKNKVLEQEEWKNF-----------RNLISQQKQLRRCGKKLPRHC 92
+++ F D D N +L+ E + + + +L + R
Sbjct: 66 PQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDD 125
Query: 93 DANNDKKISLSEWLNCL 109
D NND I +E+ L
Sbjct: 126 DKNNDGYIDYAEFAKSL 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.389
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,764,753
Number of extensions: 82250
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 71
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)