Query psy2691
Match_columns 181
No_of_seqs 154 out of 259
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 22:44:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0292|consensus 100.0 3.3E-46 7.2E-51 358.5 11.9 136 1-139 684-819 (1202)
2 PF04053 Coatomer_WDAD: Coatom 99.9 4E-28 8.7E-33 222.4 10.4 85 1-85 359-443 (443)
3 KOG0276|consensus 99.8 9.1E-19 2E-23 165.4 9.5 89 2-90 679-767 (794)
4 PF06957 COPI_C: Coatomer (COP 93.8 0.017 3.7E-07 53.8 0.0 13 167-179 72-84 (422)
5 PF12234 Rav1p_C: RAVE protein 90.5 1.8 3.9E-05 42.5 9.2 81 6-86 392-508 (631)
6 PF04840 Vps16_C: Vps16, C-ter 82.6 11 0.00024 33.7 9.1 90 9-99 215-304 (319)
7 KOG1920|consensus 81.0 13 0.00027 39.3 9.9 86 2-87 965-1056(1265)
8 PF12931 Sec16_C: Sec23-bindin 79.0 4 8.6E-05 35.6 5.0 44 50-93 1-44 (284)
9 PF12796 Ank_2: Ankyrin repeat 77.9 7.2 0.00016 26.7 5.2 23 71-95 59-81 (89)
10 KOG2114|consensus 77.4 5 0.00011 40.9 5.7 67 21-97 437-504 (933)
11 KOG0307|consensus 70.3 7 0.00015 40.5 4.8 48 46-94 489-536 (1049)
12 PF10366 Vps39_1: Vacuolar sor 67.0 22 0.00048 26.9 6.0 65 20-99 4-68 (108)
13 KOG3616|consensus 66.5 31 0.00067 35.7 8.3 51 35-85 886-936 (1636)
14 KOG3617|consensus 65.1 13 0.00029 38.5 5.5 85 1-88 924-1011(1416)
15 PF07899 Frigida: Frigida-like 62.9 18 0.0004 32.1 5.5 73 15-87 125-204 (290)
16 PF10366 Vps39_1: Vacuolar sor 61.2 34 0.00073 25.9 6.0 41 2-42 26-67 (108)
17 PF08631 SPO22: Meiosis protei 58.7 21 0.00046 30.6 5.1 19 1-19 5-23 (278)
18 cd00204 ANK ankyrin repeats; 55.5 47 0.001 22.6 5.6 74 20-94 9-94 (126)
19 KOG1524|consensus 55.1 54 0.0012 32.4 7.5 60 2-74 615-674 (737)
20 PF07035 Mic1: Colon cancer-as 53.8 1.2E+02 0.0027 24.8 8.7 90 6-97 33-131 (167)
21 PF12110 Nup96: Nuclear protei 52.4 44 0.00095 29.2 6.1 46 51-96 6-51 (290)
22 KOG3616|consensus 51.7 73 0.0016 33.2 8.0 93 2-96 490-599 (1636)
23 KOG2041|consensus 48.4 1E+02 0.0023 31.7 8.5 92 3-94 823-915 (1189)
24 PF13429 TPR_15: Tetratricopep 41.7 55 0.0012 27.3 4.9 70 2-71 159-241 (280)
25 KOG1538|consensus 40.6 57 0.0012 33.2 5.3 55 29-83 745-799 (1081)
26 smart00299 CLH Clathrin heavy 40.1 1.5E+02 0.0033 22.0 9.4 59 34-92 72-131 (140)
27 PF13637 Ank_4: Ankyrin repeat 39.9 66 0.0014 20.2 4.0 46 21-67 4-53 (54)
28 TIGR02552 LcrH_SycD type III s 38.2 1.5E+02 0.0033 21.3 6.6 51 20-70 22-77 (135)
29 PF14559 TPR_19: Tetratricopep 35.6 85 0.0019 20.0 4.1 14 2-15 4-17 (68)
30 PRK11788 tetratricopeptide rep 34.8 2.9E+02 0.0063 23.6 8.7 69 2-70 120-206 (389)
31 PF04053 Coatomer_WDAD: Coatom 33.9 1.2E+02 0.0027 28.4 6.3 54 44-97 373-429 (443)
32 PHA03058 Hypothetical protein; 33.1 1.1E+02 0.0025 24.2 5.0 42 4-45 42-86 (124)
33 cd08332 CARD_CASP2 Caspase act 31.7 1.5E+02 0.0032 21.6 5.2 48 24-82 43-90 (90)
34 PRK12370 invasion protein regu 29.8 4.8E+02 0.01 24.6 9.9 95 2-96 351-467 (553)
35 PF12895 Apc3: Anaphase-promot 28.7 1.9E+02 0.0041 19.5 5.3 14 2-15 2-15 (84)
36 PF00637 Clathrin: Region in C 28.5 6.4 0.00014 29.6 -2.6 60 18-91 45-104 (143)
37 PLN03081 pentatricopeptide (PP 28.0 1.2E+02 0.0026 29.2 5.3 44 2-45 507-558 (697)
38 COG0331 FabD (acyl-carrier-pro 27.4 46 0.001 29.8 2.2 33 25-57 168-207 (310)
39 PHA02874 ankyrin repeat protei 27.2 2.3E+02 0.0049 25.4 6.7 69 2-71 11-91 (434)
40 PF14649 Spatacsin_C: Spatacsi 26.7 4.3E+02 0.0093 23.7 8.2 39 59-97 223-264 (296)
41 PLN03088 SGT1, suppressor of 25.6 4E+02 0.0086 23.8 7.9 69 2-70 15-96 (356)
42 PF11929 DUF3447: Domain of un 23.7 1.9E+02 0.0041 19.9 4.4 35 2-37 16-51 (76)
43 TIGR00754 bfr bacterioferritin 23.6 1.7E+02 0.0036 22.8 4.6 42 29-70 96-137 (157)
44 TIGR02521 type_IV_pilW type IV 23.5 3.2E+02 0.0069 20.4 7.5 69 2-70 44-125 (234)
45 PHA02874 ankyrin repeat protei 23.0 5.3E+02 0.011 23.0 8.2 16 23-38 6-21 (434)
46 KOG1064|consensus 22.5 1.7E+02 0.0037 33.1 5.6 81 5-85 1217-1330(2439)
47 PHA02946 ankyin-like protein; 22.4 3.3E+02 0.0071 25.1 6.9 94 2-97 19-130 (446)
48 PRK15280 type III secretion pr 22.4 2.3E+02 0.005 24.5 5.4 81 46-136 109-192 (240)
49 COG1513 CynS Cyanate lyase [In 22.4 79 0.0017 25.7 2.5 35 68-103 29-67 (151)
50 KOG1538|consensus 22.3 1.8E+02 0.0039 29.9 5.3 68 4-79 600-667 (1081)
51 cd08326 CARD_CASP9 Caspase act 22.1 2.6E+02 0.0056 20.2 5.0 44 25-79 40-83 (84)
52 PF11207 DUF2989: Protein of u 21.3 2.4E+02 0.0052 24.1 5.3 30 12-41 104-133 (203)
53 TIGR02521 type_IV_pilW type IV 21.1 3.6E+02 0.0077 20.1 9.3 68 2-69 112-194 (234)
54 KOG2003|consensus 21.0 1.7E+02 0.0037 28.9 4.7 18 9-26 667-684 (840)
55 KOG3617|consensus 20.5 5.3E+02 0.012 27.5 8.2 94 2-96 980-1074(1416)
56 KOG0510|consensus 20.2 2.2E+02 0.0047 29.6 5.5 81 13-94 301-398 (929)
57 PHA02875 ankyrin repeat protei 20.1 6E+02 0.013 22.3 8.5 13 50-62 71-83 (413)
No 1
>KOG0292|consensus
Probab=100.00 E-value=3.3e-46 Score=358.54 Aligned_cols=136 Identities=65% Similarity=1.032 Sum_probs=130.8
Q ss_pred CCccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHH
Q psy2691 1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTA 80 (181)
Q Consensus 1 ~qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~A 80 (181)
+||||+|||||||++|+|++|||||++|||.+||+||++||+.|+|.++.|||+||+||+++|++||.++|++|+||++|
T Consensus 684 ~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta 763 (1202)
T KOG0292|consen 684 RQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTA 763 (1202)
T ss_pred HhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHHHHhhCCCCCCCCCCCCCCCCcccCCCCccccCCCCCCccccccchhh
Q psy2691 81 ATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVSKSFFE 139 (181)
Q Consensus 81 kt~g~~e~a~~i~~~~~~~~~~~~lp~~~~~~~~~~P~~p~~~~~~nWPll~~~~s~fe 139 (181)
++||+++.|++++++++.. ...||+..+++++++||+|+++. +||||+.+++++||
T Consensus 764 ~~~G~~~~ae~l~ee~~~~--~~~lP~~~~~a~ll~pP~p~~~l-~nwPLl~~s~~~fe 819 (1202)
T KOG0292|consen 764 AAHGLEDQAEKLGEELEKQ--VPSLPEVDPNASLLQPPVPIMPL-ENWPLLSVSKGTFE 819 (1202)
T ss_pred hhcCcHHHHHHHHHhhccc--cCCCCCCCCcccccCCCCccccc-cCCchhhhhhhhhh
Confidence 9999999999999999975 45799988889999999999666 79999999999999
No 2
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=99.95 E-value=4e-28 Score=222.39 Aligned_cols=85 Identities=48% Similarity=0.660 Sum_probs=78.1
Q ss_pred CCccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHH
Q psy2691 1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTA 80 (181)
Q Consensus 1 ~qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~A 80 (181)
+|||++|||+||||++||++|+|||+++||++||+||+++|+.+|++|++|+|+||+||+++||++|+++||+||||+||
T Consensus 359 ~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A 438 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFA 438 (443)
T ss_dssp HTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHH
T ss_pred HcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC
Q psy2691 81 ATHGL 85 (181)
Q Consensus 81 kt~g~ 85 (181)
|||||
T Consensus 439 ~ty~~ 443 (443)
T PF04053_consen 439 RTYGP 443 (443)
T ss_dssp HHTT-
T ss_pred HhcCC
Confidence 99997
No 3
>KOG0276|consensus
Probab=99.77 E-value=9.1e-19 Score=165.41 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=86.0
Q ss_pred CccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAA 81 (181)
Q Consensus 2 qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Ak 81 (181)
.|++.+|++|++|++|+.+|+|||+++||.++|.++++.|+..|.+|.+|.++|++|++++|.++|++++|+|+|++|||
T Consensus 679 ~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~Ar 758 (794)
T KOG0276|consen 679 AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFAR 758 (794)
T ss_pred cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHH
Q psy2691 82 THGLSEEAA 90 (181)
Q Consensus 82 t~g~~e~a~ 90 (181)
||+|+++..
T Consensus 759 tYlps~vs~ 767 (794)
T KOG0276|consen 759 TYLPSQVSR 767 (794)
T ss_pred hhChHHHHH
Confidence 999976544
No 4
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=93.84 E-value=0.017 Score=53.81 Aligned_cols=13 Identities=69% Similarity=1.475 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCc
Q psy2691 167 GDEDGGWDVGDDL 179 (181)
Q Consensus 167 ~~e~~gWd~~dDl 179 (181)
+++++||||+|||
T Consensus 72 ~~e~~gWD~ddDl 84 (422)
T PF06957_consen 72 EDEEGGWDLDDDL 84 (422)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 4466799998675
No 5
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.47 E-value=1.8 Score=42.47 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=61.8
Q ss_pred HHHHHHHHH--hcCchhHHHHHHhhCCHHHHHHHHHHHH-Hhc--------------------------------hhhHH
Q psy2691 6 QIVEMCYQR--TKNFDKLAFLYLITGNLEKLKKMMKIAE-IRR--------------------------------DISGQ 50 (181)
Q Consensus 6 ~laE~~yq~--~kdfd~LsfLYl~tGn~ekL~km~~iAe-~rg--------------------------------d~~~~ 50 (181)
+||...|++ .+|--.-+++|+..|...-|..|-++|. +++ .+.-+
T Consensus 392 ~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k~a~~~~~~~k~~~Fl~ndF~~~rwr~AAlKNAyaLlsk~Ry~~A 471 (631)
T PF12234_consen 392 KIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWKMASWHKEQQKMAKFLSNDFTEPRWRTAALKNAYALLSKHRYEYA 471 (631)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHHhhhcccccHHHHHHHhhcCCChHHHHHHHHhHHHHHhcccHHHH
Confidence 477888998 4777778999999999999999988763 111 11122
Q ss_pred HHHHHhhCCHHHHHHHHHH-cCCchHHHHHHHhcCCc
Q psy2691 51 YQAALLLGEVGERIKILKS-CGQTSLAYLTAATHGLS 86 (181)
Q Consensus 51 f~~~l~lgdv~~rv~vL~~-~g~~plAyl~Akt~g~~ 86 (181)
=.-.|+.|++..+|+|+.+ .+.+.||.++||-|.-+
T Consensus 472 AaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d 508 (631)
T PF12234_consen 472 AAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGD 508 (631)
T ss_pred HHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCC
Confidence 2234667889999999876 48899999999999875
No 6
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=82.64 E-value=11 Score=33.74 Aligned_cols=90 Identities=10% Similarity=0.040 Sum_probs=55.7
Q ss_pred HHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcHH
Q psy2691 9 EMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEE 88 (181)
Q Consensus 9 E~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e~ 88 (181)
..+|-..++|+.|.-+..+.-..=+-.-..+++-..|....+-..-=-+.+ ++||+.+.++|.+.+|.-.|...+..+.
T Consensus 215 i~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~ 293 (319)
T PF04840_consen 215 IKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDL 293 (319)
T ss_pred HHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHH
Confidence 345555555555554433222222222233344444443332222222566 9999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q psy2691 89 AAELESNLRTA 99 (181)
Q Consensus 89 a~~i~~~~~~~ 99 (181)
-..|...+..+
T Consensus 294 L~~i~~~~~~~ 304 (319)
T PF04840_consen 294 LKQILKRCPGN 304 (319)
T ss_pred HHHHHHHCCCC
Confidence 99998877644
No 7
>KOG1920|consensus
Probab=81.04 E-value=13 Score=39.29 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=63.8
Q ss_pred CccHHHHHHHHHHhcCchhHHHHHH-hhCCHHHHH----HHHHHHHHhchhhHHHH-HHHhhCCHHHHHHHHHHcCCchH
Q psy2691 2 QGNHQIVEMCYQRTKNFDKLAFLYL-ITGNLEKLK----KMMKIAEIRRDISGQYQ-AALLLGEVGERIKILKSCGQTSL 75 (181)
Q Consensus 2 qGn~~laE~~yq~~kdfd~LsfLYl-~tGn~ekL~----km~~iAe~rgd~~~~f~-~~l~lgdv~~rv~vL~~~g~~pl 75 (181)
-||++=|-.||+-+++...++=+.- .+-..+++. +|+.--..++++.-+-. .-.|++|+++-|.+|+++-++.+
T Consensus 965 ~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 965 CGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEE 1044 (1265)
T ss_pred hccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHH
Confidence 4788888888888888887665554 233344444 45544555666655554 47899999999999999999999
Q ss_pred HHHHHHhcCCcH
Q psy2691 76 AYLTAATHGLSE 87 (181)
Q Consensus 76 Ayl~Akt~g~~e 87 (181)
|.-.|..++-++
T Consensus 1045 Alrva~~~~~~d 1056 (1265)
T KOG1920|consen 1045 ALRVASKAKRDD 1056 (1265)
T ss_pred HHHHHHhcccch
Confidence 999999999544
No 8
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=79.00 E-value=4 Score=35.60 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=35.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcHHHHHHH
Q psy2691 50 QYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELE 93 (181)
Q Consensus 50 ~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e~a~~i~ 93 (181)
+++..|+.|+.++-++.-.+.|+++.|-++|.+.|++-..+-+.
T Consensus 1 ~I~~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~g~e~~~~v~~ 44 (284)
T PF12931_consen 1 KIQQLLLVGNREEAVELALDNGLWAHALLLASSLGPELWKKVVQ 44 (284)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHH
T ss_pred CHHHHHhCCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHH
Confidence 47889999999999999999999999999999999865444433
No 9
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=77.89 E-value=7.2 Score=26.69 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=12.2
Q ss_pred CCchHHHHHHHhcCCcHHHHHHHHh
Q psy2691 71 GQTSLAYLTAATHGLSEEAAELESN 95 (181)
Q Consensus 71 g~~plAyl~Akt~g~~e~a~~i~~~ 95 (181)
|+.|+-+ |..+|-.++++-+.+.
T Consensus 59 g~t~L~~--A~~~~~~~~~~~Ll~~ 81 (89)
T PF12796_consen 59 GNTALHY--AAENGNLEIVKLLLEH 81 (89)
T ss_dssp SSBHHHH--HHHTTHHHHHHHHHHT
T ss_pred CCCHHHH--HHHcCCHHHHHHHHHc
Confidence 3444433 5556666666665543
No 10
>KOG2114|consensus
Probab=77.38 E-value=5 Score=40.85 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=52.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcH-HHHHHHHhhC
Q psy2691 21 LAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSE-EAAELESNLR 97 (181)
Q Consensus 21 LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e-~a~~i~~~~~ 97 (181)
|+-.|..-++.+||.+..+... .|-. -=|++.-++||.+++-+.+|+.+|+.|+..+ +..-+++.++
T Consensus 437 LLncYiKlkd~~kL~efI~~~~-~g~~---------~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ 504 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISKCD-KGEW---------FFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLH 504 (933)
T ss_pred HHHHHHHhcchHHHHHHHhcCC-Ccce---------eeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhc
Confidence 4556777889999999877655 4444 3479999999999999999999999999944 5555566655
No 11
>KOG0307|consensus
Probab=70.27 E-value=7 Score=40.53 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=40.2
Q ss_pred hhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcHHHHHHHH
Q psy2691 46 DISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELES 94 (181)
Q Consensus 46 d~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e~a~~i~~ 94 (181)
|.-...+-+++.||+.+-|+++.+.+++++|.+.|.++|.+ .-++++.
T Consensus 489 d~d~~Is~alitgd~~~aV~~cl~~~~~a~AliiA~~gg~e-l~~~t~~ 536 (1049)
T KOG0307|consen 489 DIDGLISEALITGDFKSAVELCLEANKMADALIIAHAGGTE-LLESTRD 536 (1049)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHHhcCCHH-HHHHHHH
Confidence 44566788999999999999999999999999999999986 4444443
No 12
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.01 E-value=22 Score=26.86 Aligned_cols=65 Identities=25% Similarity=0.223 Sum_probs=54.7
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcHHHHHHHHhhCCC
Q psy2691 20 KLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTA 99 (181)
Q Consensus 20 ~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e~a~~i~~~~~~~ 99 (181)
.|+-+|+.+ +...|..+..+ .+. =|++++.++|.+.|++.+=..+=+++|..+.|=+++.++.-+
T Consensus 4 aLlk~Yl~~-~~~~l~~llr~-----~N~---------C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 4 ALLKCYLET-NPSLLGPLLRL-----PNY---------CDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred HHHHHHHHh-CHHHHHHHHcc-----CCc---------CCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 478899999 88888887543 322 389999999999999999999999999999999999988753
No 13
>KOG3616|consensus
Probab=66.45 E-value=31 Score=35.69 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=44.1
Q ss_pred HHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCC
Q psy2691 35 KKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGL 85 (181)
Q Consensus 35 ~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~ 85 (181)
..+++--+.+|+.-.+=-..|-.||....|++.+.++....||-.|||-|-
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg 936 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGG 936 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhcccc
Confidence 445566678888888777788899999999999999999999999999886
No 14
>KOG3617|consensus
Probab=65.13 E-value=13 Score=38.47 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=72.9
Q ss_pred CCccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHH-Hh--hCCHHHHHHHHHHcCCchHHH
Q psy2691 1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAA-LL--LGEVGERIKILKSCGQTSLAY 77 (181)
Q Consensus 1 ~qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~-l~--lgdv~~rv~vL~~~g~~plAy 77 (181)
++|...-|---|.+++|+=++.=+.++.|+++|- +.||+..||.-..||.+ .| -|++.+.|..+.++--++-|.
T Consensus 924 S~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kA---a~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAI 1000 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKA---ARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAI 1000 (1416)
T ss_pred cccchHHHHHHHHHhhhhhhheeeEeeccCchHH---HHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999987654 56888999998888874 33 478999999999999999999
Q ss_pred HHHHhcCCcHH
Q psy2691 78 LTAATHGLSEE 88 (181)
Q Consensus 78 l~Akt~g~~e~ 88 (181)
=++|-|++++.
T Consensus 1001 RlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 1001 RLCKENDMKDR 1011 (1416)
T ss_pred HHHHhcCHHHH
Confidence 99999998663
No 15
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=62.89 E-value=18 Score=32.07 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=58.1
Q ss_pred hcCchhHHHHHHhhC-------CHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcH
Q psy2691 15 TKNFDKLAFLYLITG-------NLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSE 87 (181)
Q Consensus 15 ~kdfd~LsfLYl~tG-------n~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e 87 (181)
.+..+-+.||++... |.+.|.++....-.|......|...-+..-+..-|+-|++.|++-+|.-|+.++|+.+
T Consensus 125 ~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~d 204 (290)
T PF07899_consen 125 ENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVD 204 (290)
T ss_pred CCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCC
Confidence 356677778877654 7888888887777777766666666666677899999999999999999999999853
No 16
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.19 E-value=34 Score=25.86 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=33.2
Q ss_pred CccHHHHHHHHHHhcCchhHHHHHHhhCCHHHH-HHHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKL-KKMMKIAE 42 (181)
Q Consensus 2 qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL-~km~~iAe 42 (181)
.++++.+|.+..+.+.|.-|..||-..|..++= .-+.+++.
T Consensus 26 ~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 26 YCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578899999999999999999999999977664 44444444
No 17
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=58.72 E-value=21 Score=30.58 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=17.7
Q ss_pred CCccHHHHHHHHHHhcCch
Q psy2691 1 MQGNHQIVEMCYQRTKNFD 19 (181)
Q Consensus 1 ~qGn~~laE~~yq~~kdfd 19 (181)
+|||+++|+.+|+|++++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~ 23 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLL 23 (278)
T ss_pred hhCCHHHHHHHHHHhhhHH
Confidence 5899999999999999977
No 18
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=55.53 E-value=47 Score=22.61 Aligned_cols=74 Identities=22% Similarity=0.170 Sum_probs=43.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHH----HhchhhHHHHHHHhhCCHHHHHHHHHHcCCc--------hHHHHHHHhcCCcH
Q psy2691 20 KLAFLYLITGNLEKLKKMMKIAE----IRRDISGQYQAALLLGEVGERIKILKSCGQT--------SLAYLTAATHGLSE 87 (181)
Q Consensus 20 ~LsfLYl~tGn~ekL~km~~iAe----~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~--------plAyl~Akt~g~~e 87 (181)
..++.++..|+.+-+..|.+... ........++.++..+++ +.++.|.+.|.. .-+...|-.++.-+
T Consensus 9 t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~ 87 (126)
T cd00204 9 TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHL-EIVKLLLEKGADVNARDKDGNTPLHLAARNGNLD 87 (126)
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHH
Confidence 45566777777777777654322 122334578888888887 666666665511 11333344555566
Q ss_pred HHHHHHH
Q psy2691 88 EAAELES 94 (181)
Q Consensus 88 ~a~~i~~ 94 (181)
.++.+..
T Consensus 88 ~~~~L~~ 94 (126)
T cd00204 88 VVKLLLK 94 (126)
T ss_pred HHHHHHH
Confidence 6666655
No 19
>KOG1524|consensus
Probab=55.12 E-value=54 Score=32.45 Aligned_cols=60 Identities=27% Similarity=0.361 Sum_probs=45.8
Q ss_pred CccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCch
Q psy2691 2 QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTS 74 (181)
Q Consensus 2 qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~p 74 (181)
.-|.+++|.||.-+.+-+|.+++-.+..-+.|=.+|+.+. +++|.+.+.--+|..+|..-
T Consensus 615 ~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~-------------l~~G~~~eAe~iLl~~gl~~ 674 (737)
T KOG1524|consen 615 KHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENS-------------LMLGRMLEAETILLHGGLIE 674 (737)
T ss_pred hccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHH-------------HHhccchhhhHHHHhcchHH
Confidence 3478899999999999999999999999999999997665 44555555555555555433
No 20
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=53.81 E-value=1.2e+02 Score=24.83 Aligned_cols=90 Identities=22% Similarity=0.225 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCchhHHHH--HHhhCCHHHHHHHHHHHHHhchhhHHHHHHH----hhC-CHHHHHHHHHHcCCchHHHH
Q psy2691 6 QIVEMCYQRTKNFDKLAFL--YLITGNLEKLKKMMKIAEIRRDISGQYQAAL----LLG-EVGERIKILKSCGQTSLAYL 78 (181)
Q Consensus 6 ~laE~~yq~~kdfd~LsfL--Yl~tGn~ekL~km~~iAe~rgd~~~~f~~~l----~lg-dv~~rv~vL~~~g~~plAyl 78 (181)
.+...+.-+.|.|..|..| |-+--|..-+..+ +-...+.+...+|.++ -+| .-++++++|..-|++-+|.-
T Consensus 33 ~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~--LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr 110 (167)
T PF07035_consen 33 ELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQ--LLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALR 110 (167)
T ss_pred HHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHH--HHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHH
Confidence 3445566777888887544 6677788888765 4556667777888765 467 88999999999999999999
Q ss_pred HHHhc-CCcH-HHHHHHHhhC
Q psy2691 79 TAATH-GLSE-EAAELESNLR 97 (181)
Q Consensus 79 ~Akt~-g~~e-~a~~i~~~~~ 97 (181)
+|+++ +.+. -+..+++.+-
T Consensus 111 ~ar~~~~~~~~~~~~fLeAA~ 131 (167)
T PF07035_consen 111 YARQYHKVDSVPARKFLEAAA 131 (167)
T ss_pred HHHHcCCcccCCHHHHHHHHH
Confidence 99995 5433 3455666553
No 21
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex [], [].; PDB: 3BG1_C 3BG0_F 3IKO_B.
Probab=52.43 E-value=44 Score=29.19 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=32.8
Q ss_pred HHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcHHHHHHHHhh
Q psy2691 51 YQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNL 96 (181)
Q Consensus 51 f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e~a~~i~~~~ 96 (181)
.-..|.-|+|++-+++.+++|.+.||.+++...|...+-..+.+++
T Consensus 6 if~~L~~~~i~~A~~~A~~~~n~~LA~Llsq~~~~~~~r~~~~~QL 51 (290)
T PF12110_consen 6 IFLLLSGHDIEEACELAIDSGNPHLATLLSQIGGDPAVRSLAKQQL 51 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCchHHHHHHHhcCCHHHHHHHHHHH
Confidence 3456778999999999999999999999999965555544444454
No 22
>KOG3616|consensus
Probab=51.67 E-value=73 Score=33.17 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=69.9
Q ss_pred CccHHHHHHHHHHhcCchhHHHHHHhh-----------C---CHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTKNFDKLAFLYLIT-----------G---NLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKIL 67 (181)
Q Consensus 2 qGn~~laE~~yq~~kdfd~LsfLYl~t-----------G---n~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL 67 (181)
.||.-|||.||.-.++.-|.-||+-+. | +.=|++-|..|- ..++-.+=...|--|++++.|-+.
T Consensus 490 ~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail--~kkfk~ae~ifleqn~te~aigmy 567 (1636)
T KOG3616|consen 490 AGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAIL--EKKFKEAEMIFLEQNATEEAIGMY 567 (1636)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHH--HhhhhHHHHHHHhcccHHHHHHHH
Confidence 589999999999999999999998543 2 344667775554 344555555667789999999999
Q ss_pred HHcCCchHHHHHHHhcCCc---HHHHHHHHhh
Q psy2691 68 KSCGQTSLAYLTAATHGLS---EEAAELESNL 96 (181)
Q Consensus 68 ~~~g~~plAyl~Akt~g~~---e~a~~i~~~~ 96 (181)
.+--+..+|..+|+.-|-. .+-.+++..+
T Consensus 568 ~~lhkwde~i~lae~~~~p~~eklk~sy~q~l 599 (1636)
T KOG3616|consen 568 QELHKWDEAIALAEAKGHPALEKLKRSYLQAL 599 (1636)
T ss_pred HHHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 9999999999999988874 3444454433
No 23
>KOG2041|consensus
Probab=48.41 E-value=1e+02 Score=31.72 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHhcCchhHHHHHH-hhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHH
Q psy2691 3 GNHQIVEMCYQRTKNFDKLAFLYL-ITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAA 81 (181)
Q Consensus 3 Gn~~laE~~yq~~kdfd~LsfLYl-~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Ak 81 (181)
|+..=-.+||-+..+|+.|--|.- ..-|.+-|-+|+..=..+|--..+.++.|--++.+..|....+-+|.-+|.=+|+
T Consensus 823 ~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 823 GDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred cchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334444567777777777766553 4557777888999889999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHH
Q psy2691 82 THGLSEEAAELES 94 (181)
Q Consensus 82 t~g~~e~a~~i~~ 94 (181)
.|-+.++..-|..
T Consensus 903 ~~~l~qv~tliak 915 (1189)
T KOG2041|consen 903 RFQLPQVQTLIAK 915 (1189)
T ss_pred hccchhHHHHHHH
Confidence 9999775444433
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=41.67 E-value=55 Score=27.29 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=47.4
Q ss_pred CccHHHHHHHHHHhcC--------chhHHHHHHhhCCHHHHHHHHHHHHHhc----hhhHHH-HHHHhhCCHHHHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTKN--------FDKLAFLYLITGNLEKLKKMMKIAEIRR----DISGQY-QAALLLGEVGERIKILK 68 (181)
Q Consensus 2 qGn~~laE~~yq~~kd--------fd~LsfLYl~tGn~ekL~km~~iAe~rg----d~~~~f-~~~l~lgdv~~rv~vL~ 68 (181)
+|+..-|+.+|+++=. ...|.+++.-+|+.++++.+.+...... .+...| .+.+.+|+.++.+..|.
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 6888888888887643 3356777778899998777776666553 232333 34667899988888888
Q ss_pred HcC
Q psy2691 69 SCG 71 (181)
Q Consensus 69 ~~g 71 (181)
++-
T Consensus 239 ~~~ 241 (280)
T PF13429_consen 239 KAL 241 (280)
T ss_dssp HHH
T ss_pred ccc
Confidence 643
No 25
>KOG1538|consensus
Probab=40.57 E-value=57 Score=33.24 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhc
Q psy2691 29 GNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATH 83 (181)
Q Consensus 29 Gn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~ 83 (181)
-+++.|.+++.--......-.+=-...-+||..+-|++=+++++.++|..+|..|
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhC
Confidence 3566666666665666666666666677899999999999999999999998765
No 26
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=40.12 E-value=1.5e+02 Score=21.97 Aligned_cols=59 Identities=19% Similarity=0.072 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHc-CCchHHHHHHHhcCCcHHHHHH
Q psy2691 34 LKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSC-GQTSLAYLTAATHGLSEEAAEL 92 (181)
Q Consensus 34 L~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~-g~~plAyl~Akt~g~~e~a~~i 92 (181)
+.+++++++.++-+..++..+--.|..++.++++.+. +.+..|.-+++.-+..++-..+
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~ 131 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEV 131 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHH
Confidence 3444455555555545555444455555555555554 4455555555554444443333
No 27
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=39.95 E-value=66 Score=20.21 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=23.1
Q ss_pred HHHHHHhhCCHHHHHHHHH----HHHHhchhhHHHHHHHhhCCHHHHHHHH
Q psy2691 21 LAFLYLITGNLEKLKKMMK----IAEIRRDISGQYQAALLLGEVGERIKIL 67 (181)
Q Consensus 21 LsfLYl~tGn~ekL~km~~----iAe~rgd~~~~f~~~l~lgdv~~rv~vL 67 (181)
+++.-...|+.+-++.|.+ +...-.+-...+|.+.+.|++ +++++|
T Consensus 4 ~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~-~~~~~L 53 (54)
T PF13637_consen 4 PLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNI-DIVKFL 53 (54)
T ss_dssp HHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-H-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCH-HHHHHH
Confidence 3444555666666666653 333334455678888887763 455554
No 28
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=38.20 E-value=1.5e+02 Score=21.30 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=23.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHH-----HHHhhCCHHHHHHHHHHc
Q psy2691 20 KLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQ-----AALLLGEVGERIKILKSC 70 (181)
Q Consensus 20 ~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~-----~~l~lgdv~~rv~vL~~~ 70 (181)
.+...|...|+.++-..+.+.+...+..+..+. +.+..|+.++.+.++.++
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444444333322222 223355566666555544
No 29
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=35.63 E-value=85 Score=20.00 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=8.5
Q ss_pred CccHHHHHHHHHHh
Q psy2691 2 QGNHQIVEMCYQRT 15 (181)
Q Consensus 2 qGn~~laE~~yq~~ 15 (181)
+|+++=|...|++.
T Consensus 4 ~~~~~~A~~~~~~~ 17 (68)
T PF14559_consen 4 QGDYDEAIELLEKA 17 (68)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 46666666666654
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=34.79 E-value=2.9e+02 Score=23.61 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=40.2
Q ss_pred CccHHHHHHHHHHhcC--------chhHHHHHHhhCCHHHHHHHHHHHHHhchhh-----HHHHH-----HHhhCCHHHH
Q psy2691 2 QGNHQIVEMCYQRTKN--------FDKLAFLYLITGNLEKLKKMMKIAEIRRDIS-----GQYQA-----ALLLGEVGER 63 (181)
Q Consensus 2 qGn~~laE~~yq~~kd--------fd~LsfLYl~tGn~ekL~km~~iAe~rgd~~-----~~f~~-----~l~lgdv~~r 63 (181)
+|++.-|+.+|++.-. +..|..+|...|+.++-.++.+.+...+..+ ..|.+ .+-.|+.++-
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 5777778888777754 2345567777888776655555544433221 11211 2335787777
Q ss_pred HHHHHHc
Q psy2691 64 IKILKSC 70 (181)
Q Consensus 64 v~vL~~~ 70 (181)
++.|.++
T Consensus 200 ~~~~~~a 206 (389)
T PRK11788 200 RALLKKA 206 (389)
T ss_pred HHHHHHH
Confidence 7776653
No 31
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=33.88 E-value=1.2e+02 Score=28.39 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=30.8
Q ss_pred hchhhHHHHHHHhhCCHHHHHHHH---HHcCCchHHHHHHHhcCCcHHHHHHHHhhC
Q psy2691 44 RRDISGQYQAALLLGEVGERIKIL---KSCGQTSLAYLTAATHGLSEEAAELESNLR 97 (181)
Q Consensus 44 rgd~~~~f~~~l~lgdv~~rv~vL---~~~g~~plAyl~Akt~g~~e~a~~i~~~~~ 97 (181)
.+|+...+.-+...||.++-.++. ...|.+..|...+---|.-+..-.|+.+.|
T Consensus 373 ~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 373 AKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp CT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred hcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 344555555566667766555443 345577777777777777666666666655
No 32
>PHA03058 Hypothetical protein; Provisional
Probab=33.06 E-value=1.1e+02 Score=24.16 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHhcCchhHHHHHHhhC---CHHHHHHHHHHHHHhc
Q psy2691 4 NHQIVEMCYQRTKNFDKLAFLYLITG---NLEKLKKMMKIAEIRR 45 (181)
Q Consensus 4 n~~laE~~yq~~kdfd~LsfLYl~tG---n~ekL~km~~iAe~rg 45 (181)
.+.+|+...++-.+..++.|||-.++ |++-.+++.+-|+.+-
T Consensus 42 RiDlA~Ki~~~Y~g~~~iyFl~kv~~~ipn~~yv~s~L~r~i~~~ 86 (124)
T PHA03058 42 RIDLAEKISEKYPGIRSIYFLKKVISEIPNTEYVDSLLSRAIKDF 86 (124)
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 47899999999999999999999887 8888888877666543
No 33
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=31.70 E-value=1.5e+02 Score=21.64 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=34.6
Q ss_pred HHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHh
Q psy2691 24 LYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAAT 82 (181)
Q Consensus 24 LYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt 82 (181)
+....-..++.+++..+=..||+. ||... ++.|.++|+..||-++.||
T Consensus 43 I~~~~t~~~k~~~Lld~L~~RG~~--AF~~F---------~~aL~~~~~~~La~lL~~~ 90 (90)
T cd08332 43 IMAKPTSFSQNVALLNLLPKRGPR--AFSAF---------CEALRETSQEHLCDLLEKT 90 (90)
T ss_pred HHcCCCcHHHHHHHHHHHHHhChh--HHHHH---------HHHHHhcChHHHHHHHhhC
Confidence 334445788899999998899865 44433 5667788888888887764
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=29.83 E-value=4.8e+02 Score=24.57 Aligned_cols=95 Identities=8% Similarity=0.106 Sum_probs=54.1
Q ss_pred CccHHHHHHHHHHhc--------CchhHHHHHHhhCCHHHHHHHHHHHHHhchhhH-----HHHHHHhhCCHHHHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTK--------NFDKLAFLYLITGNLEKLKKMMKIAEIRRDISG-----QYQAALLLGEVGERIKILK 68 (181)
Q Consensus 2 qGn~~laE~~yq~~k--------dfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~-----~f~~~l~lgdv~~rv~vL~ 68 (181)
+|++.-|+.+|+++- -+-.|..+|...|+.+.=......|....-.+. .....++.|+.++-+..+.
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 578888888888743 234567778888987765555555544333221 1123556788777766655
Q ss_pred Hc-----CCchHH-HHHHHhc---CCcHHHHHHHHhh
Q psy2691 69 SC-----GQTSLA-YLTAATH---GLSEEAAELESNL 96 (181)
Q Consensus 69 ~~-----g~~plA-yl~Akt~---g~~e~a~~i~~~~ 96 (181)
+. -..|.+ +..|..| |--+.|......+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 43 123333 2344444 5555666665554
No 35
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=28.75 E-value=1.9e+02 Score=19.54 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=6.7
Q ss_pred CccHHHHHHHHHHh
Q psy2691 2 QGNHQIVEMCYQRT 15 (181)
Q Consensus 2 qGn~~laE~~yq~~ 15 (181)
||+++-|...|.+.
T Consensus 2 ~~~y~~Ai~~~~k~ 15 (84)
T PF12895_consen 2 QGNYENAIKYYEKL 15 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 45555555554443
No 36
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=28.50 E-value=6.4 Score=29.59 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=37.9
Q ss_pred chhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcHHHHH
Q psy2691 18 FDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAE 91 (181)
Q Consensus 18 fd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e~a~~ 91 (181)
...|..||+..+..++|.+..+. .+ .=|+....+++.+.|.+.+|.++....|..+.|-+
T Consensus 45 ~~~L~~ly~~~~~~~~l~~~L~~---~~-----------~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~ 104 (143)
T PF00637_consen 45 HTLLLELYIKYDPYEKLLEFLKT---SN-----------NYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALE 104 (143)
T ss_dssp HHHHHHHHHCTTTCCHHHHTTTS---SS-----------SS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSS
T ss_pred HHHHHHHHHhcCCchHHHHHccc---cc-----------ccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHH
Confidence 35677777777666677666441 00 13567777778888888788777777776544433
No 37
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=28.02 E-value=1.2e+02 Score=29.21 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHH--------hcCchhHHHHHHhhCCHHHHHHHHHHHHHhc
Q psy2691 2 QGNHQIVEMCYQR--------TKNFDKLAFLYLITGNLEKLKKMMKIAEIRR 45 (181)
Q Consensus 2 qGn~~laE~~yq~--------~kdfd~LsfLYl~tGn~ekL~km~~iAe~rg 45 (181)
+||+++++.++++ ...|--|+-+|...|+.++-.++.+.-..+|
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
No 38
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=27.39 E-value=46 Score=29.80 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=27.8
Q ss_pred HHhhCCHHHHHHHHHHHHHhc-h------hhHHHHHHHhh
Q psy2691 25 YLITGNLEKLKKMMKIAEIRR-D------ISGQYQAALLL 57 (181)
Q Consensus 25 Yl~tGn~ekL~km~~iAe~rg-d------~~~~f~~~l~l 57 (181)
|.++|..+.|.++..+++.+| + .++.||+.++.
T Consensus 168 iVIsG~~~ale~a~~~~~~~g~kr~i~l~vs~pfHs~lm~ 207 (310)
T COG0331 168 IVISGTKEALEKAAEILKEAGAKRAIPLPVSGPFHSPLMK 207 (310)
T ss_pred EEEECCHHHHHHHHHHHHHhhhhhhcccCCCchhhhhhhH
Confidence 568999999999999999888 2 57888888766
No 39
>PHA02874 ankyrin repeat protein; Provisional
Probab=27.18 E-value=2.3e+02 Score=25.41 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=31.4
Q ss_pred CccHHHHHHHHHHhcC--------chhHHHHHHhhCCHHHHHHHHHHH----HHhchhhHHHHHHHhhCCHHHHHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTKN--------FDKLAFLYLITGNLEKLKKMMKIA----EIRRDISGQYQAALLLGEVGERIKILKS 69 (181)
Q Consensus 2 qGn~~laE~~yq~~kd--------fd~LsfLYl~tGn~ekL~km~~iA----e~rgd~~~~f~~~l~lgdv~~rv~vL~~ 69 (181)
+||+++++..+.+.+. ....+......|+.+-++.|.+.- .........++.+...|+. +.+++|.+
T Consensus 11 ~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~-~iv~~Ll~ 89 (434)
T PHA02874 11 SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAH-DIIKLLID 89 (434)
T ss_pred cCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHH
Confidence 4556666555543322 123344445556665555554310 0011112345555555554 34555555
Q ss_pred cC
Q psy2691 70 CG 71 (181)
Q Consensus 70 ~g 71 (181)
.|
T Consensus 90 ~g 91 (434)
T PHA02874 90 NG 91 (434)
T ss_pred CC
Confidence 54
No 40
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=26.70 E-value=4.3e+02 Score=23.65 Aligned_cols=39 Identities=21% Similarity=0.116 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHcCCchHHHHHHHhcCC---cHHHHHHHHhhC
Q psy2691 59 EVGERIKILKSCGQTSLAYLTAATHGL---SEEAAELESNLR 97 (181)
Q Consensus 59 dv~~rv~vL~~~g~~plAyl~Akt~g~---~e~a~~i~~~~~ 97 (181)
+.++-.+++....++++|-++|+.||. .+.++.|-.+.=
T Consensus 223 ~~~~~~~~v~~~~~F~eALIva~AY~~n~~~~Wa~~Ly~q~v 264 (296)
T PF14649_consen 223 SREEARRLVMSHPRFPEALIVAEAYDLNQPSDWAEVLYQQVV 264 (296)
T ss_pred CHHHHHHHHHhCCChHHHHHHHHHHCCCCCccHHHHHHHHHH
Confidence 466677788899999999999999999 778887776543
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=25.55 E-value=4e+02 Score=23.75 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=41.4
Q ss_pred CccHHHHHHHHHHhcC--------chhHHHHHHhhCCHHHHHHHHHHHHHhchh-----hHHHHHHHhhCCHHHHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTKN--------FDKLAFLYLITGNLEKLKKMMKIAEIRRDI-----SGQYQAALLLGEVGERIKILK 68 (181)
Q Consensus 2 qGn~~laE~~yq~~kd--------fd~LsfLYl~tGn~ekL~km~~iAe~rgd~-----~~~f~~~l~lgdv~~rv~vL~ 68 (181)
+|++.-|..+|.++=. +-.+..+|+..|+.+.-...+..|....-. ..+-.+.+.+|+.++.+..|.
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5778888888877632 335566777788876655555555433222 222234455677777776665
Q ss_pred Hc
Q psy2691 69 SC 70 (181)
Q Consensus 69 ~~ 70 (181)
++
T Consensus 95 ~a 96 (356)
T PLN03088 95 KG 96 (356)
T ss_pred HH
Confidence 43
No 42
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=23.71 E-value=1.9e+02 Score=19.92 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=20.7
Q ss_pred CccHHHHHHHHHHhcCchhHHHHHHhhC-CHHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTKNFDKLAFLYLITG-NLEKLKKM 37 (181)
Q Consensus 2 qGn~~laE~~yq~~kdfd~LsfLYl~tG-n~ekL~km 37 (181)
-||.+|++.|.++.+-. +-.+-+.+.- +.+-+..|
T Consensus 16 GGN~eII~~c~~~~~~~-~~~l~~AI~~H~n~i~~~l 51 (76)
T PF11929_consen 16 GGNFEIINICLKKNKPD-NDCLEYAIKSHNNEIADWL 51 (76)
T ss_pred CCCHHHHHHHHHHhccH-HHHHHHHHHHhhHHHHHHH
Confidence 48999999999766444 4444444443 33434444
No 43
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=23.63 E-value=1.7e+02 Score=22.81 Aligned_cols=42 Identities=26% Similarity=0.274 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHc
Q psy2691 29 GNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSC 70 (181)
Q Consensus 29 Gn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~ 70 (181)
.-++.++++.++|...+|+.+.=..-+++.+.++.+..|...
T Consensus 96 ~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~ 137 (157)
T TIGR00754 96 DVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEHIDWLETQ 137 (157)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999988888889999999999988753
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=23.54 E-value=3.2e+02 Score=20.39 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=36.5
Q ss_pred CccHHHHHHHHHHhcC--------chhHHHHHHhhCCHHHHHHHHHHHHHhchhhHH-----HHHHHhhCCHHHHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTKN--------FDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQ-----YQAALLLGEVGERIKILK 68 (181)
Q Consensus 2 qGn~~laE~~yq~~kd--------fd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~-----f~~~l~lgdv~~rv~vL~ 68 (181)
+|+++-|...|+++-. +-.+..+|...|+.++-.+..+.+......+.. =.+.+..|+.++.++.+.
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 123 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4566666666654321 234556777777777666665555443322211 122344566666666665
Q ss_pred Hc
Q psy2691 69 SC 70 (181)
Q Consensus 69 ~~ 70 (181)
++
T Consensus 124 ~~ 125 (234)
T TIGR02521 124 QA 125 (234)
T ss_pred HH
Confidence 54
No 45
>PHA02874 ankyrin repeat protein; Provisional
Probab=22.96 E-value=5.3e+02 Score=23.04 Aligned_cols=16 Identities=19% Similarity=0.619 Sum_probs=7.5
Q ss_pred HHHHhhCCHHHHHHHH
Q psy2691 23 FLYLITGNLEKLKKMM 38 (181)
Q Consensus 23 fLYl~tGn~ekL~km~ 38 (181)
..+...||.+.++.+.
T Consensus 6 ~~ai~~gd~~~v~~ll 21 (434)
T PHA02874 6 RMCIYSGDIEAIEKII 21 (434)
T ss_pred HHHHhcCCHHHHHHHH
Confidence 3444445555544443
No 46
>KOG1064|consensus
Probab=22.55 E-value=1.7e+02 Score=33.12 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHH------------------------Hhc--------hhhHHHH
Q psy2691 5 HQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAE------------------------IRR--------DISGQYQ 52 (181)
Q Consensus 5 ~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe------------------------~rg--------d~~~~f~ 52 (181)
-+||..+|||-+|=..-+++|+.-.-..-|.-|-+.+. .++ .+.-+-.
T Consensus 1217 EKlAK~af~kn~dP~DaALfYLALkKk~Vl~gLfr~~~~hed~kmv~FfsnnF~eerWrkAAlKNAFvLLgKhRfe~Aaa 1296 (2439)
T KOG1064|consen 1217 EKLAKAAFQKKRDPLDAALFYLALKKKQVLWGLFRLAKDHEDTKMVVFFSNNFTEERWRKAALKNAFVLLGKHRFEHAAA 1296 (2439)
T ss_pred HHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHHHHHhhccccchHHHHhhccccHHHHHHHHHhhHHHHhhhHHHHHHHH
Confidence 36899999999999999999998877665554444443 011 0111222
Q ss_pred HHHhhCCHHHHHHHHH-HcCCchHHHHHHHhcCC
Q psy2691 53 AALLLGEVGERIKILK-SCGQTSLAYLTAATHGL 85 (181)
Q Consensus 53 ~~l~lgdv~~rv~vL~-~~g~~plAyl~Akt~g~ 85 (181)
-.|+.|....+|+|++ +.....||..++|-|--
T Consensus 1297 FFLLagslkDAI~VC~kkl~DiQLALvI~RlYEg 1330 (2439)
T KOG1064|consen 1297 FFLLAGSLKDAINVCCKKLNDIQLALVICRLYEG 1330 (2439)
T ss_pred HHhhcchHHHHHHHHHHhhhhhhhhheeeeeecC
Confidence 3577899999999976 47889999999998854
No 47
>PHA02946 ankyin-like protein; Provisional
Probab=22.44 E-value=3.3e+02 Score=25.09 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=48.4
Q ss_pred CccHHHHHHHHHHhcCchhHHHHHH---hhC-CHHHHHHHHH----HHHHhchhhHHHHHHHhhCCHHHHHHHHHHc---
Q psy2691 2 QGNHQIVEMCYQRTKNFDKLAFLYL---ITG-NLEKLKKMMK----IAEIRRDISGQYQAALLLGEVGERIKILKSC--- 70 (181)
Q Consensus 2 qGn~~laE~~yq~~kdfd~LsfLYl---~tG-n~ekL~km~~----iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~--- 70 (181)
.||++++...++........+.|+. ++| +.+-++.|.+ +-....+-...+|.+...|+. +.|++|.+.
T Consensus 19 ~~n~~~~~~~l~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~-eiv~lLL~~GAd 97 (446)
T PHA02946 19 SKNLDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNN-RIVAMLLTHGAD 97 (446)
T ss_pred cCcHHHHHHHHhccCCCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCH-HHHHHHHHCcCC
Confidence 4677888877776654443333332 233 3333444422 112222334567888777875 456777654
Q ss_pred -------CCchHHHHHHHhcCCcHHHHHHHHhhC
Q psy2691 71 -------GQTSLAYLTAATHGLSEEAAELESNLR 97 (181)
Q Consensus 71 -------g~~plAyl~Akt~g~~e~a~~i~~~~~ 97 (181)
|+.||-|+.+..++.-++++-++ +.|
T Consensus 98 in~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~~G 130 (446)
T PHA02946 98 PNACDKQHKTPLYYLSGTDDEVIERINLLV-QYG 130 (446)
T ss_pred CCCCCCCCCCHHHHHHHcCCchHHHHHHHH-HcC
Confidence 46677665443333334444333 344
No 48
>PRK15280 type III secretion protein SopE2; Provisional
Probab=22.43 E-value=2.3e+02 Score=24.48 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=48.0
Q ss_pred hhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcHHHHHHHHhhCCCCC---CCCCCCCCCCCcccCCCCccc
Q psy2691 46 DISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADP---NATLPTVHPEAQLLRPPAPVA 122 (181)
Q Consensus 46 d~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e~a~~i~~~~~~~~~---~~~lp~~~~~~~~~~P~~p~~ 122 (181)
...-+..+++|.+..++|.++|+..|--+.+++-+-- +-...+|+... ++-.|...+. .+.+.|.-+
T Consensus 109 Qt~EA~lsavyS~~Kd~~c~ll~~kG~~i~pfLkeiG--------eAA~naGLPGe~KngVFtPsGaGa-nPfv~pLi~- 178 (240)
T PRK15280 109 QTCEAILSAVYSNNKDQCCKLLISKGVSITPFLKEIG--------EAAQNAGLPGEIKNGVFTPGGAGA-NPFVVPLIA- 178 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCCccHHHHHHH--------HHHHhCCCCCcccCCccCCCCCCC-Ccchhhhhh-
Confidence 3455788999999999999999999988887763221 11223454432 3445654322 222222212
Q ss_pred cCCCCCCccccccc
Q psy2691 123 EAETNWPLLTVSKS 136 (181)
Q Consensus 123 ~~~~nWPll~~~~s 136 (181)
+....+|+...+.+
T Consensus 179 sa~~~yphmf~n~~ 192 (240)
T PRK15280 179 SASIKYPHMFINHN 192 (240)
T ss_pred hhhhhcchhhhhhh
Confidence 33466888766544
No 49
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=22.42 E-value=79 Score=25.71 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=26.8
Q ss_pred HHcCCchHHHHHHHhcCC----cHHHHHHHHhhCCCCCCC
Q psy2691 68 KSCGQTSLAYLTAATHGL----SEEAAELESNLRTADPNA 103 (181)
Q Consensus 68 ~~~g~~plAyl~Akt~g~----~e~a~~i~~~~~~~~~~~ 103 (181)
...| ..+.+++|.-||- .+.|..+.+.++++++.+
T Consensus 29 ~~lG-~~ev~vaa~~ygqa~~~~~ear~v~e~L~L~~~~v 67 (151)
T COG1513 29 DGLG-LAEVFVAAALYGQAALPADEARAVGEALDLDEDAI 67 (151)
T ss_pred hhcC-ccHHHHHHHHHhhccCCHHHHHHHHHHhCCCHHHH
Confidence 3455 4778888888876 778889999999987653
No 50
>KOG1538|consensus
Probab=22.29 E-value=1.8e+02 Score=29.86 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHH
Q psy2691 4 NHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLT 79 (181)
Q Consensus 4 n~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~ 79 (181)
++++|..||.|.+|..=|-++ ..|++|.+-.+.-++.-.+ .+.-|.|...+..+++.++|+-.-|.=+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li-------~EL~~~k~rge~P~~iLlA-~~~Ay~gKF~EAAklFk~~G~enRAlEm 667 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELI-------SELEERKKRGETPNDLLLA-DVFAYQGKFHEAAKLFKRSGHENRALEM 667 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHH-------HHHHHHHhcCCCchHHHHH-HHHHhhhhHHHHHHHHHHcCchhhHHHH
Confidence 578999999999998766554 3566664433333333332 2344789999999999999987776533
No 51
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.13 E-value=2.6e+02 Score=20.22 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=32.8
Q ss_pred HHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHH
Q psy2691 25 YLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLT 79 (181)
Q Consensus 25 Yl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~ 79 (181)
....-..++-.++..|=..||+. ||... ++.|.++|+..||-++
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~--AF~~F---------~~aL~~~~~~~LA~lL 83 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQ--AFPAF---------LSALRETGQTDLAELL 83 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHH--HHHHH---------HHHHHhcCchHHHHHh
Confidence 34455678889999998899875 55555 5678889988888764
No 52
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=21.30 E-value=2.4e+02 Score=24.11 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=23.4
Q ss_pred HHHhcCchhHHHHHHhhCCHHHHHHHHHHH
Q psy2691 12 YQRTKNFDKLAFLYLITGNLEKLKKMMKIA 41 (181)
Q Consensus 12 yq~~kdfd~LsfLYl~tGn~ekL~km~~iA 41 (181)
-+++.+=.-|+|+.+.+||.+.+++..+..
T Consensus 104 tk~S~dP~llYy~Wsr~~d~~A~~~fL~~E 133 (203)
T PF11207_consen 104 TKNSQDPYLLYYHWSRFGDQEALRRFLQLE 133 (203)
T ss_pred HccCCCccHHHHHhhccCcHHHHHHHHHHc
Confidence 345556667888889999999999997764
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=21.14 E-value=3.6e+02 Score=20.10 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=32.9
Q ss_pred CccHHHHHHHHHHhcC----------chhHHHHHHhhCCHHHHHHHHHHHHHhchhhH-----HHHHHHhhCCHHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTKN----------FDKLAFLYLITGNLEKLKKMMKIAEIRRDISG-----QYQAALLLGEVGERIKI 66 (181)
Q Consensus 2 qGn~~laE~~yq~~kd----------fd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~-----~f~~~l~lgdv~~rv~v 66 (181)
+|+++-|...|+++-. +..+...|...|+.+.-.++..-+......+. .-....-.|+.++.+..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 3555555555555422 12345566666776666555555443322211 11223334555555555
Q ss_pred HHH
Q psy2691 67 LKS 69 (181)
Q Consensus 67 L~~ 69 (181)
+.+
T Consensus 192 ~~~ 194 (234)
T TIGR02521 192 LER 194 (234)
T ss_pred HHH
Confidence 544
No 54
>KOG2003|consensus
Probab=21.02 E-value=1.7e+02 Score=28.88 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=9.1
Q ss_pred HHHHHHhcCchhHHHHHH
Q psy2691 9 EMCYQRTKNFDKLAFLYL 26 (181)
Q Consensus 9 E~~yq~~kdfd~LsfLYl 26 (181)
--||.|+++|.|-+=||-
T Consensus 667 asc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred HHHHHhcccHHHHHHHHH
Confidence 345555555555444443
No 55
>KOG3617|consensus
Probab=20.48 E-value=5.3e+02 Score=27.48 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=57.0
Q ss_pred CccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhh-CCHHHHHHHHHHcCCchHHHHHH
Q psy2691 2 QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLL-GEVGERIKILKSCGQTSLAYLTA 80 (181)
Q Consensus 2 qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~l-gdv~~rv~vL~~~g~~plAyl~A 80 (181)
+|.+.-|.+-|.|++-|++-.=|.--.+=.+.|-.++-.+..+.....+ ..+==+ |.....|-+.+++|++.-|.=+|
T Consensus 980 ~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aA-rYyEe~g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAA-RYYEELGGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHH-HHHHHcchhhhHHHHHHHhhcchHHHHHHH
Confidence 6777778888888888887766666666666665555444333222221 111113 48888999999999998887666
Q ss_pred HhcCCcHHHHHHHHhh
Q psy2691 81 ATHGLSEEAAELESNL 96 (181)
Q Consensus 81 kt~g~~e~a~~i~~~~ 96 (181)
=.----..-+-|.+.+
T Consensus 1059 F~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDL 1074 (1416)
T ss_pred HhhcccHHHHHHHHhc
Confidence 4333333333444433
No 56
>KOG0510|consensus
Probab=20.23 E-value=2.2e+02 Score=29.57 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=62.7
Q ss_pred HHhcCchhHHHHHHhhCCHHHHHHHHHHH------HHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchH-----------
Q psy2691 13 QRTKNFDKLAFLYLITGNLEKLKKMMKIA------EIRRDISGQYQAALLLGEVGERIKILKSCGQTSL----------- 75 (181)
Q Consensus 13 q~~kdfd~LsfLYl~tGn~ekL~km~~iA------e~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~pl----------- 75 (181)
+|.+|=.+.+=+..++|+..-+++|.++. +.....+...|.+- -..-+.++++|.+.|..-+
T Consensus 301 ~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa-~~gH~~v~qlLl~~GA~~~~~~e~D~dg~T 379 (929)
T KOG0510|consen 301 SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA-KSGHDRVVQLLLNKGALFLNMSEADSDGNT 379 (929)
T ss_pred ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh-hcCHHHHHHHHHhcChhhhcccccccCCch
Confidence 45566667777788999999999999933 45566677777776 5667899999999999998
Q ss_pred HHHHHHhcCCcHHHHHHHH
Q psy2691 76 AYLTAATHGLSEEAAELES 94 (181)
Q Consensus 76 Ayl~Akt~g~~e~a~~i~~ 94 (181)
|.-+|.-||.....+-+..
T Consensus 380 aLH~Aa~~g~~~av~~Li~ 398 (929)
T KOG0510|consen 380 ALHLAAKYGNTSAVQKLIS 398 (929)
T ss_pred hhhHHHHhccHHHHHHHHH
Confidence 5778899998665555544
No 57
>PHA02875 ankyrin repeat protein; Provisional
Probab=20.14 E-value=6e+02 Score=22.31 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=6.0
Q ss_pred HHHHHHhhCCHHH
Q psy2691 50 QYQAALLLGEVGE 62 (181)
Q Consensus 50 ~f~~~l~lgdv~~ 62 (181)
.+|.+...|+++.
T Consensus 71 ~L~~A~~~g~~~~ 83 (413)
T PHA02875 71 ELHDAVEEGDVKA 83 (413)
T ss_pred HHHHHHHCCCHHH
Confidence 3444444444443
Done!