RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2691
(181 letters)
>gnl|CDD|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region. This
region is composed of WD40 repeats.
Length = 429
Score = 132 bits (335), Expect = 3e-37
Identities = 43/84 (51%), Positives = 55/84 (65%)
Query: 2 QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
QGN ++ E YQ+ K+FDKL LYL TGN EKLKK+ KIAE R D + +Q AL LG+V
Sbjct: 346 QGNIKLAEEAYQKAKDFDKLLLLYLSTGNKEKLKKLAKIAEERGDYNSAFQNALYLGDVE 405
Query: 62 ERIKILKSCGQTSLAYLTAATHGL 85
+ + IL G+ AYL A T+G
Sbjct: 406 KCVDILIKTGRLPEAYLFAKTYGP 429
>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus. This
family represents the C-terminus (approximately 500
residues) of the eukaryotic coatomer alpha subunit.
Coatomer (COPI) is a large cytosolic protein complex
which forms a coat around vesicles budding from the
Golgi apparatus. Such coatomer-coated vesicles have been
proposed to play a role in many distinct steps of
intracellular transport. Note that many family members
also contain the pfam04053 domain.
Length = 421
Score = 37.2 bits (86), Expect = 0.003
Identities = 21/39 (53%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 143 DEDLEGEGRGRRTHAGGDDGD-EEGGDEDGGWDVGDDLV 180
D LEGE DD + EGGDE+GGWDV DDLV
Sbjct: 52 DGYLEGE------DGLLDDEEGPEGGDEEGGWDVEDDLV 84
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 29.0 bits (65), Expect = 1.6
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 88 EAAELESNLRTADPNATLPTVHPEAQ-LLRPPAPVAE 123
A + L A A P + PEAQ ++ P
Sbjct: 397 GDAARAAALNDAGAGAARPGLPPEAQAIVYGPGASEA 433
>gnl|CDD|197505 smart00080, LIF_OSM, leukemia inhibitory factor. OSM, Oncostatin
M.
Length = 157
Score = 27.5 bits (61), Expect = 2.9
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 73 TSLAYLTAATHGLSEEAAELESNLRTADPN--ATLPTVHPEAQLLRPPAPV 121
SL +T L+ AA L+S L N L V L V
Sbjct: 80 ASLGNITRDQQVLNPTAASLQSKLNATRDNIRGLLSNVLCRLCLKYHVEHV 130
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 27.7 bits (62), Expect = 4.0
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 139 EALDDEDLEGEG-RGRRTHAGGDDGDEEGGDE 169
+ DD+DL R H GG + DEE +E
Sbjct: 136 DDFDDDDLGDLASDDRAAHFGGGEDDEEDEEE 167
>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S
ribosomal protein L9; Provisional.
Length = 838
Score = 27.5 bits (61), Expect = 4.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 23 FLYLITGNLEKLKKMMK----IAEIRRDISGQYQAALLL 57
FL LI N + L KM++ I + R+IS +YQ + L
Sbjct: 257 FLLLI--NRQNLDKMIENKFSILDTIRNISHKYQLKVTL 293
>gnl|CDD|224226 COG1307, DegV, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 282
Score = 27.2 bits (61), Expect = 4.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 47 ISGQYQAALLLGEVGERIKI 66
+SG YQ+A L E+ E K+
Sbjct: 93 LSGTYQSAQLAAELVEGAKV 112
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 26.9 bits (60), Expect = 6.2
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 139 EALDDEDLEGEGRGRRTHAGGDDGDEEGGDEDGGWDVGDD 178
E L+ E + D D+ DE+ W+V +D
Sbjct: 73 ELLEKWKEEERKKKEAEQGLESDDDD---DEEEEWEVEED 109
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 27.2 bits (61), Expect = 6.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 147 EGEGRGRRTHAGGDDGDEEGGDEDGGWDVGDD 178
G+ RGRR D + ED G GDD
Sbjct: 223 GGDRRGRRRRRDRRDARGDDNREDRGDRDGDD 254
>gnl|CDD|219524 pfam07698, 7TM-7TMR_HD, 7TM receptor with intracellular HD
hydrolase. These bacterial 7TM receptor proteins have
an intracellular pfam01966. This entry corresponds to
the 7 helix transmembrane domain. These proteins also
contain an N-terminal extracellular domain.
Length = 189
Score = 26.3 bits (59), Expect = 7.2
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 53 AALLLGEVGERIKILKSCGQTSLAYL 78
AL + + R ++L++ +L +
Sbjct: 112 GALSVRRLRSRSQLLQAGLLVALVNV 137
>gnl|CDD|184798 PRK14704, PRK14704, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 618
Score = 27.1 bits (60), Expect = 7.4
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 6 QIVE-MCYQRTKNFDKLAFLY--LITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGE 62
Q++E YQ TK FLY + EKL+ +A I + Q L LG +G
Sbjct: 358 QLLERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASILK------QGTLSLGFIG- 410
Query: 63 RIKILKSCGQTSLAYLTAATHGLSEEAAEL 92
L C L LT HG EE+ +L
Sbjct: 411 ----LAEC----LVALTGKHHGEDEESWKL 432
>gnl|CDD|216187 pfam00913, Trypan_glycop, Trypanosome variant surface glycoprotein
(A-type). The trypanosome parasite expresses these
proteins to evade the immune response. This family
includes a variety of surface proteins such as
Trypanosoma brucei VSGs such as expression site
associated gene (ESAG) 6 and 7.
Length = 370
Score = 26.6 bits (59), Expect = 8.9
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 32 EKLKKM-----MKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQ---TSLAYLTAATH 83
++LKK+ K+ I I +AAL L RI K+ G + A L A
Sbjct: 35 KELKKVPGYALTKLQAILTAIEELEKAALRL-----RIYAAKAAGAEEAKAAAALAAYLR 89
Query: 84 GLSEEAAELESNLRTADPNAT 104
+ A L++ L +A
Sbjct: 90 KAAAALASLKATLVKKAIDAA 110
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 26.5 bits (58), Expect = 9.6
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 84 GLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVSKSFFEALDD 143
L + A +E + A L T P + A+ E + T+ + E
Sbjct: 368 SLPDIEAYIEQKIPVEPVTAELLTPLPRPPRVPVEGEEADDEAGDSVGTIFREAREQRAA 427
Query: 144 EDLE------GEGRGRRTHAGGDDGDEEGGDEDGG 172
E+ G G G R+ + G G +G DG
Sbjct: 428 EEQRRGGGRSGPGGGSRSGSVGGGGRRDGAGADGK 462
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.134 0.387
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,513,958
Number of extensions: 899669
Number of successful extensions: 743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 735
Number of HSP's successfully gapped: 37
Length of query: 181
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 90
Effective length of database: 6,901,388
Effective search space: 621124920
Effective search space used: 621124920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.5 bits)