RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2691
(181 letters)
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 140 bits (353), Expect = 7e-43
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 2 QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
QGN + EM YQ +FDKL+FLYL+TG++ KL KM IA+ R D
Sbjct: 47 QGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTK 106
Query: 62 ERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPV 121
ER I G LAY A +G A+ + + TLP + ++ P +
Sbjct: 107 ERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAEVDEQDVTLPDQMDASNFVQRP-VI 165
Query: 122 AEAETNWPLL 131
++ WPL
Sbjct: 166 SKPLEKWPLK 175
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 131 bits (331), Expect = 5e-36
Identities = 17/90 (18%), Positives = 35/90 (38%)
Query: 2 QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
+ N ++ + + + L L+ N E L + K AE + + A + G++
Sbjct: 694 RFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQ 753
Query: 62 ERIKILKSCGQTSLAYLTAATHGLSEEAAE 91
+L + S A +T+GL +
Sbjct: 754 GAKDLLIKSQRFSEAAFLGSTYGLGDNEVN 783
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 4e-06
Identities = 36/216 (16%), Positives = 57/216 (26%), Gaps = 77/216 (35%)
Query: 2 QGNHQIVEMC---YQRTKNFDKLAFLYLITGNLEKLKKMMK------IAEIRRDISGQYQ 52
QG+ Q M Y+ +K + + K I +I + +
Sbjct: 1624 QGS-QEQGMGMDLYKTSKAAQDV---------WNRADNHFKDTYGFSILDIVIN-NPVNL 1672
Query: 53 AALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPT-VHPE 111
GE G+RI+ Y + + + E + + ++T T +
Sbjct: 1673 TIHFGGEKGKRIREN---------YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 112 AQLLRP----PAPVAEAETNWPLLTVSKSFFEALDDEDLE-----------GE------- 149
L PA L + K+ FE L + L GE
Sbjct: 1724 GLLSATQFTQPA----------LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 150 -G-------------RGRRTHAGGDDGDEEGGDEDG 171
RG T DE G G
Sbjct: 1774 ADVMSIESLVEVVFYRG-MTMQVAVPRDELGRSNYG 1808
Score = 38.9 bits (90), Expect = 6e-04
Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 48/130 (36%)
Query: 77 YLTAATHGLSEEAAELE------------------SNLRTADPNATLPTVHPEAQLLRPP 118
L A+ ++++ + S+LR + + V ++R
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD---CIIR-- 485
Query: 119 APVAEAETNWPLLTVSKS-----F-------FEALDDEDLEGEGRGRRTHAGGDDGDEEG 166
PV W T K+ F L + +G G R G +
Sbjct: 486 LPV-----KWETTTQFKATHILDFGPGGASGLGVLTHRNK--DGTGVRVIVA---GTLDI 535
Query: 167 GDEDGGWDVG 176
+D D G
Sbjct: 536 NPDD---DYG 542
Score = 27.7 bits (61), Expect = 2.6
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 5 HQIVEMCYQRTK------NFDKLAFLYLITGN---LEKLKKMMKIAEIRR-DISGQYQAA 54
+VE +RT N++ Y+ G+ L+ + ++ ++++ DI + Q +
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII-ELQKS 1885
Query: 55 LLLGEVGERI 64
L L EV +
Sbjct: 1886 LSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-05
Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 58/185 (31%)
Query: 6 QIVEMCYQRTKNFDKLA-FLYLITGNLEKLKKMMKIAEIRRDISG-QYQAALL-LGEVGE 62
+ ++ YQ N+ + I + ++ AE+RR + Y+ LL L V
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-----AELRRLLKSKPYENCLLVLLNVQN 255
Query: 63 RIKILK----SCGQT-------SLA-YLTAAT----------HGLSE-EAAELES---NL 96
K SC + + +L+AAT L+ E L +
Sbjct: 256 A-KAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 97 RTADPNATLP----TVHPE-----AQLLRPPAPVAEAETNWP------LLTVSKSFFEAL 141
R D LP T +P A+ +R + NW L T+ +S L
Sbjct: 314 RPQD----LPREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNVL 366
Query: 142 DDEDL 146
+ +
Sbjct: 367 EPAEY 371
Score = 34.4 bits (78), Expect = 0.016
Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 49/168 (29%)
Query: 3 GNHQIVEMCYQRTKN----FDKLAFLYLITGNLEKLKKMMKIAE-IRRDISGQYQAALLL 57
++ R N F K N+ +L+ +K+ + + + L+
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKY--------NVSRLQPYLKLRQALLELRPAKN--VLID 156
Query: 58 GEVGERIKILKSCGQTSLAYLTAATHGL------------------SEEAAELESNL-RT 98
G +G G+T +A ++ + E E+ L
Sbjct: 157 GVLG--------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 99 ADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVSKSFFEAL---DD 143
DPN T + H + + L SK + L +
Sbjct: 209 IDPNWTSRSDHSS----NIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Score = 26.0 bits (56), Expect = 9.6
Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 36/136 (26%)
Query: 5 HQ-IVEMCYQRTKNF----------DKLAFLYL-----ITGNLEKLKKMMKI-------- 40
H+ IV+ Y K F D+ + ++ + E++ +
Sbjct: 446 HRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 41 AEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTAD 100
+IR D + + +L + ++K K Y+ + L +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQ-QLKFYKP-------YICDNDPKYERLVNAILDFLPKIE 556
Query: 101 PNATLPTVHPEAQLLR 116
N LLR
Sbjct: 557 ENLIC---SKYTDLLR 569
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.25
Identities = 4/28 (14%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 87 EEAAELESNLRTADPNATLPTVHPEAQL 114
+ +L+++L+ ++ P + +A +
Sbjct: 20 QALKKLQASLKLYADDSA-PALAIKATM 46
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme;
spermidine biosynthesis, lyase, pyruvate, sandwich,
allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP:
d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A*
1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A*
3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A*
3ep5_A* ...
Length = 334
Score = 29.3 bits (65), Expect = 0.69
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 32 EKLKKMMKIA--EIRRDISGQYQAALLLGE----VGERIKILKSCGQTSL 75
+ ++K I Q A +L E V +R ILK+CG T L
Sbjct: 38 SEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLL 87
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT
facility, SSPF, nuclear protein; 1.79A {Lassa virus
josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Length = 577
Score = 28.8 bits (64), Expect = 1.3
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 24 LYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCG 71
L ++ +LEKLK + E R +G Y L ++ +R +L G
Sbjct: 107 LLILAADLEKLKSKVIRTE-RPLSAGVYMGNLSSQQLDQRRALLNMIG 153
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 13/72 (18%)
Query: 2 QGNHQIVEMCYQRTKN-------------FDKLAFLYLITGNLEKLKKMMKIAEIRRDIS 48
G + + F+ L LYL + E ++ E + +
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336
Query: 49 GQYQAALLLGEV 60
A+ + +
Sbjct: 337 DLEDFAIDVAKY 348
>1zn6_A Phage-related conserved hypothetical protein; novel, structural
genomics, PSI; 1.80A {Bordetella bronchiseptica} SCOP:
d.303.1.1
Length = 227
Score = 26.7 bits (59), Expect = 4.4
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 98 TADPNATLPTVHPEAQLLRPPAPVA-EAETNW--PLLTVSKSFFEALDDEDLE 147
AD + H + R + A +W T ++ F + L
Sbjct: 162 NADDDPLFRDYHQAGKEKRMVVILPDGAYGDWLTAPATDTRDFLLPYPADRLV 214
>3dee_A Putative regulatory protein; structural genomics, joint CENT
structural genomics, JCSG, protein structure initiative;
2.10A {Neisseria gonorrhoeae fa 1090}
Length = 249
Score = 26.5 bits (58), Expect = 5.8
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 88 EAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWP 129
E A++ N + T P A + + V
Sbjct: 115 EVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTHDLQEAE 156
>1i8n_A Anti-platelet protein; PAN module, toxin; 2.20A {Haementeria
officinalis} SCOP: g.10.1.2
Length = 126
Score = 25.5 bits (55), Expect = 6.8
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 139 EALDDEDLEGEGRGRRTHAGGDDGDEE---GGDED-----GGWDVGDDLV 180
E + ED G T GGD G+EE G+ED GW + D+L+
Sbjct: 11 ETSEGEDTTGSDETPSTGGGGDGGNEETITAGNEDCWSKRPGWKLPDNLL 60
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative,
center for eukaryotic structural genomics, CESG,
structural genomics; NMR {Arabidopsis thaliana}
Length = 150
Score = 25.3 bits (55), Expect = 9.7
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 8/62 (12%)
Query: 128 WPLLTVSKSF--------FEALDDEDLEGEGRGRRTHAGGDDGDEEGGDEDGGWDVGDDL 179
W L S+ + DED E + +D G DL
Sbjct: 85 WTRLLKSEEKPAPYIKVDWNKWCDEDEEVNSETASDDESAFVNQDSESSDDDGLLYLPDL 144
Query: 180 VE 181
+
Sbjct: 145 EK 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.134 0.387
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,895,982
Number of extensions: 172630
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 22
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)