RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2691
         (181 letters)



>g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase
          {Potato (Solanum tuberosum) [TaxId: 4113]}
          Length = 323

 Score = 31.4 bits (71), Expect = 0.048
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 32 EKLKKMMKIA--EIRRDISGQYQAALLLGE----VGERIKILKSCGQTSLAYLTAATHGL 85
           +L +++  A   I  ++S  Y  + +L E    V     I+K+CG T L     A   +
Sbjct: 29 AQLDEILGPAECTIVDNLSNDYVDSYVLSEXSLFVYSYKIIIKTCGTTKLL---LAIPPI 85

Query: 86 SEEAAEL 92
             A  L
Sbjct: 86 LRLAETL 92


>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 325

 Score = 30.7 bits (69), Expect = 0.076
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 32 EKLKKMMKIA--EIRRDISGQYQAALLLGE----VGERIKILKSCGQTSL 75
           +   ++K     I        Q A +L E    V +R  ILK+CG T L
Sbjct: 34 SEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLL 83


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 26.7 bits (59), Expect = 2.0
 Identities = 8/63 (12%), Positives = 16/63 (25%), Gaps = 8/63 (12%)

Query: 65  KILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEA 124
           +IL+ C  ++  Y       +      +  + R     A           L   A     
Sbjct: 891 QILRYCDHST--YFINTLTAI------IAGSRRPPSVQAAAAWSAQGGAGLEAGARALMD 942

Query: 125 ETN 127
             +
Sbjct: 943 AVD 945


>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4,
           N-terminal domain {Clostridium cellulolyticum, atcc
           35319 [TaxId: 1521]}
          Length = 454

 Score = 26.1 bits (57), Expect = 3.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 130 LLTVSKSFFEALDDEDLEGEGRGR-RTHAGGDDGDEEGGDEDGGW-DVGD 177
            L  S  F+E     DL  + R   R  +G  DG + G D  GGW D GD
Sbjct: 7   ALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGD 56


>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli
          [TaxId: 562]}
          Length = 78

 Score = 24.0 bits (52), Expect = 5.6
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 26 LITGNLEKLKKMMKIAEIRRDISG 49
          +I   L++L+ M K   I+ +  G
Sbjct: 32 MINAMLQQLESMGKAVRIQEEPDG 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 685,806
Number of extensions: 30284
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 9
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.3 bits)