BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2692
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKR|B Chain B, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 320
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 12/131 (9%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
+ SFETA +LLHDQ+GV F PY+Q+FL +Y + RT Y LP L + +P R + +
Sbjct: 29 AGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGL 88
Query: 74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV K+EI EA+Q
Sbjct: 89 KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 148
Query: 122 IINICKEYIVG 132
+I IC+EYIVG
Sbjct: 149 LITICREYIVG 159
>pdb|3MV2|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|C Chain C, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|E Chain E, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 325
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRS-- 71
+ +F+ A + L Q+GV P ++ F N Y RT + P P R D +
Sbjct: 41 AGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVS 100
Query: 72 ---------SIDLI-AKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
+D++ K+ + Y+ K AIE R + I LL+V ++ + A +
Sbjct: 101 EDQILPYVPGLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHK 160
Query: 122 IINICKEYIVG 132
I+ +EYI+G
Sbjct: 161 ILETAREYILG 171
>pdb|3MV3|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|C Chain C, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|E Chain E, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 325
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRS-- 71
+ +F+ A + L Q+GV P ++ F N Y RT + P P R D +
Sbjct: 41 AGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVS 100
Query: 72 ---------SIDLI-AKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
+D++ K + Y+ K AIE R + I LL V ++ + A +
Sbjct: 101 EDQILPYVPGLDVVNEKXNEGYKNFKLNKPDIAIECFREAIYRITLLXVDDAEDEKLAHK 160
Query: 122 IINICKEYIVG 132
I+ +EYI+G
Sbjct: 161 ILETAREYILG 171
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 75 LIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQI 122
L+ I + T + +F + I +++ IPLLVV K ++EE +Q+
Sbjct: 84 LVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQV 131
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 75 LIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQI 122
L+ I + T + +F + I +++ IPLLVV K ++EE +Q+
Sbjct: 80 LVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQV 127
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 62 AFPTRKVDRSSIDLIAKIQQCYQLT--------TSGKFVDAIEKLRNV-LICIPLLVVTT 112
FP K+D+ D+ I++ Y+ T +F+D + +NV L IP + + T
Sbjct: 129 GFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDT 188
Query: 113 KKEIEEAKQIINI 125
+ E K+I I
Sbjct: 189 RFESRTRKEISKI 201
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 62 AFPTRKVDRSSIDLIAKIQQCYQLT--------TSGKFVDAIEKLRNV-LICIPLLVVTT 112
FP K+D+ D+ I++ Y+ T +F+D + +NV L IP + + T
Sbjct: 124 GFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDT 183
Query: 113 KKEIEEAKQIINI 125
+ E K+I I
Sbjct: 184 RFESRTRKEISKI 196
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 71 SSIDLIAKIQQCYQLTTSGKFVDAIEKLRNV--LICIPLLVVTTKKEIEEAKQIIN 124
++I ++ K ++ +TT + A+E+L+ L+ PL V TK+E ++AK++ +
Sbjct: 126 AAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFS 181
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 26 DQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPV 60
+Q N PY + + S+ S TAY+ + LAP+
Sbjct: 363 EQYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLAPL 397
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 26 DQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPV 60
+Q N PY + + S+ S TAY+ + LAP+
Sbjct: 363 EQYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLAPL 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,216,008
Number of Sequences: 62578
Number of extensions: 105122
Number of successful extensions: 220
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 13
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)