BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2692
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1
Length = 1224
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 12/131 (9%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
+ SFETA +LLHDQ+GV F PY+Q+FL +Y + RT Y LP L + +P R + +
Sbjct: 933 AGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGL 992
Query: 74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV K+EI EA+Q
Sbjct: 993 KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052
Query: 122 IINICKEYIVG 132
+I IC+EYIVG
Sbjct: 1053 LITICREYIVG 1063
>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2
Length = 1224
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 12/131 (9%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
+ SFETA +LLHDQ+GV F PY+Q+FL +Y + RT Y LP L + +P R + +
Sbjct: 933 AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGL 992
Query: 74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV K+EI EA+Q
Sbjct: 993 KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052
Query: 122 IINICKEYIVG 132
+I IC+EYIVG
Sbjct: 1053 LITICREYIVG 1063
>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2
Length = 1224
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 12/131 (9%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
+ SFETA +LLHDQ+GV F PY+Q+FL +Y + RT Y LP L + ++P R + +
Sbjct: 933 AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPSMYSYPNRNWKDAGL 992
Query: 74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV K+EI EA+Q
Sbjct: 993 KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052
Query: 122 IINICKEYIVG 132
+I IC+EYIVG
Sbjct: 1053 LITICREYIVG 1063
>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1
SV=2
Length = 1216
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 18/135 (13%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLN------SYLQSRTAYSTLPLL---------A 58
+ SF+TA +LLH Q+G+KNF P + MFL+ SYL++ ++ +PL +
Sbjct: 927 AGSFDTAMRLLHRQLGIKNFTPLKSMFLDLFNGSHSYLRAFSSCPVVPLAIERGWSESSS 986
Query: 59 P-VTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIE 117
P V + P D S +D K++ Y+ TT+GKF +A+ ++L IPL+VV T++E++
Sbjct: 987 PNVRSPPALVYDFSQLD--EKLKSGYKATTTGKFTEALRLFLSILHTIPLVVVETRREVD 1044
Query: 118 EAKQIINICKEYIVG 132
E K++I I KEY++G
Sbjct: 1045 EVKELIVIVKEYVLG 1059
>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2
SV=1
Length = 1218
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 18/135 (13%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLN------SYLQSRTAYSTLPLL---------A 58
+ SF+TA +LLH Q+G+KNF P + MFL+ SYL++ ++ +PL +
Sbjct: 928 AGSFDTAMRLLHRQLGIKNFAPLKSMFLDLFSGSHSYLRAFSSSPVVPLAIERGWSESSS 987
Query: 59 P-VTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIE 117
P V P D S ++ AK++ Y+ TT+GK +A+ ++L IPL+VV +++E++
Sbjct: 988 PNVRGPPALVFDFSQLE--AKLKSGYKATTAGKLSEALRVFLSILQTIPLVVVESRREVD 1045
Query: 118 EAKQIINICKEYIVG 132
E K+++ I KEY++G
Sbjct: 1046 EVKELVIIVKEYVLG 1060
>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica
GN=Os09g0127800 PE=2 SV=1
Length = 1218
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 82/134 (61%), Gaps = 16/134 (11%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRT---AYSTLPLLAPV--------TA 62
+ +F+TA +LL Q+G+KNF P + +FL+ ++ S + A +T P++ PV +A
Sbjct: 930 AGNFDTAMRLLSRQLGIKNFAPLKPLFLDLHMGSHSYLRALATAPII-PVAVEKGWSESA 988
Query: 63 FPTRKVDRSSI----DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEE 118
P + + + + +++ Y+ TT GKF +A+ + N+L IPL+VV +++E++E
Sbjct: 989 SPNVRGPPALVFTFSQMEDRLKAAYKATTEGKFPEALRQFLNILHTIPLIVVDSRREVDE 1048
Query: 119 AKQIINICKEYIVG 132
K++I I +EY++G
Sbjct: 1049 VKELIEIVREYVLG 1062
>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica
GN=Os03g0711500 PE=2 SV=1
Length = 1218
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 82/134 (61%), Gaps = 16/134 (11%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRT---AYSTLPLLAPV--------TA 62
+ +F+TA +LL Q+G+KNF P + +FL+ ++ S + A +T P++ PV +A
Sbjct: 930 AGNFDTAMRLLSRQLGIKNFAPLKPLFLDLHMGSHSYLHALATAPII-PVAVEKGWSESA 988
Query: 63 FPTRKVDRSSI----DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEE 118
P + + + + +++ Y+ TT GKF +A+ + ++L IPL+VV +++E++E
Sbjct: 989 SPNVRGPPALVFTFPQMEDRLKAAYKATTDGKFPEALRQFLSILHTIPLIVVDSRREVDE 1048
Query: 119 AKQIINICKEYIVG 132
K++I I +EY++G
Sbjct: 1049 VKELIEIVREYVLG 1062
>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1
Length = 1221
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 10/127 (7%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAY----STLPLLAPV---TAFPTR 66
+ SFE+A +L+ QIG NF P + MF+N ++ +R++ ST LL P+ +A P
Sbjct: 933 AGSFESAMNILNSQIGAVNFDPIKSMFMNIFMATRSSLGCNASTPSLLMPIQRKSAAPY- 991
Query: 67 KVDRSSIDLIAKIQ-QCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINI 125
+ LI +++ Y+ TT GKF DA+ +L I V K+E+ E K +INI
Sbjct: 992 -ITYGLGHLIERLKTNAYKSTTEGKFNDALSHFTYILHTIIFCSVDNKQEVNELKDLINI 1050
Query: 126 CKEYIVG 132
C+EYI+G
Sbjct: 1051 CREYILG 1057
>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica
GN=Os03g0711400 PE=2 SV=1
Length = 1218
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 82/134 (61%), Gaps = 16/134 (11%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRT---AYSTLPLLAPV--------TA 62
+ +F+TA +LL Q+G+KNF P + +F++ ++ S + A +T P++ P+ +A
Sbjct: 930 AGNFDTAMRLLSRQLGIKNFAPLKPLFVDLHMGSHSYLRALATAPII-PIAVEKGWSESA 988
Query: 63 FPTRKVDRSSI----DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEE 118
P + + + + +++ Y+ TT GKF +A+ + ++L IPL+VV +++E++E
Sbjct: 989 SPNVRGPPALVFTFPQMEDRLKAAYKATTDGKFPEALRQFLSILHTIPLIVVDSRREVDE 1048
Query: 119 AKQIINICKEYIVG 132
K++I I +EY++G
Sbjct: 1049 VKELIEIVREYVLG 1062
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRS-- 71
+ FE+A K+L+ Q+G NF P + FL Y SR T+ L P+ ++ R + +
Sbjct: 922 AGDFESAMKILNKQVGAINFSPLKTRFLEIYTASRVYLPTISGLDPLVSYVRRNAETAER 981
Query: 72 --SIDLIAK---------IQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAK 120
++ I + + + Y+L + K ++A R+++ V +++E +E
Sbjct: 982 SQALPFITRNLASIKSHELHEAYRLVKANKILEAQICFRSIIYLALTTVANSEEEADEIS 1041
Query: 121 QIINICKEYIVG 132
+I+ C YIV
Sbjct: 1042 ALIDECCRYIVA 1053
>sp|P53622|COPA_YEAST Coatomer subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=COP1 PE=1 SV=2
Length = 1201
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRS-- 71
+ +F+ A + L Q+GV P ++ F N Y RT + P P R D +
Sbjct: 917 AGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVS 976
Query: 72 ---------SIDLI-AKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
+D++ K+ + Y+ K AIE R + I LL+V ++ + A +
Sbjct: 977 EDQILPYVPGLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHK 1036
Query: 122 IINICKEYIVG 132
I+ +EYI+G
Sbjct: 1037 ILETAREYILG 1047
>sp|Q5R6B5|AL1B1_PONAB Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1
PE=2 SV=1
Length = 517
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 34 LPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKV---DRSSIDLIAK-IQQCYQLTTSG 89
+PY Q+F+N+ Q + T P + P T V DR+ +D K ++ ++L +
Sbjct: 34 IPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPW 93
Query: 90 KFVDAIEKLRNVLICIPLLV 109
+ +DA E+ R +L C+ LV
Sbjct: 94 RRMDASERGR-LLNCLADLV 112
>sp|P30837|AL1B1_HUMAN Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1
PE=1 SV=3
Length = 517
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 34 LPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKV---DRSSIDLIAK-IQQCYQLTTSG 89
+PY Q+F+N+ Q + T P + P T V DR+ +D K ++ ++L +
Sbjct: 34 IPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPW 93
Query: 90 KFVDAIEKLR 99
+ +DA E+ R
Sbjct: 94 RRMDASERGR 103
>sp|P13199|ORF57_SHV21 ORF57 protein OS=Saimiriine herpesvirus 2 (strain 11) GN=EJRF1 PE=1
SV=2
Length = 417
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 74 DLIAKIQQCYQLTTSGKFVDAIEKLRNVLI------------CIPLLVVTTKKEIEEAKQ 121
D I K Q CY + ++ + +DA+ L+ +I C+P ++ TK E +
Sbjct: 303 DHIVK-QVCYLIASNNRILDAVRYLQTSVIKSPIVLLLAYAVCLPAAIICTKNETQLYSH 361
Query: 122 IINICKEYIVG 132
+ I KEY G
Sbjct: 362 CMRILKEYRPG 372
>sp|A5FGE0|MNME_FLAJ1 tRNA modification GTPase MnmE OS=Flavobacterium johnsoniae (strain
ATCC 17061 / DSM 2064 / UW101) GN=mnmE PE=3 SV=1
Length = 466
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 86 TTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICK 127
+S +FV IE+++N PLL+V KK+I +++NI +
Sbjct: 315 ASSSEFVSEIEQIKNKYPLKPLLIVVNKKDILSEDEVLNITQ 356
>sp|Q9UPU3|SORC3_HUMAN VPS10 domain-containing receptor SorCS3 OS=Homo sapiens GN=SORCS3
PE=2 SV=2
Length = 1222
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 2 NLHKVTSESINKSSSFETAFKLLHDQIGVKNFLPY 36
NL VT S+ +S+ + T ++ L+D++G+K L Y
Sbjct: 221 NLGSVTESSLWRSTDYGTTYEKLNDKVGLKTVLSY 255
>sp|Q8WY21|SORC1_HUMAN VPS10 domain-containing receptor SorCS1 OS=Homo sapiens GN=SORCS1
PE=2 SV=3
Length = 1168
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 2 NLHKVTSESINKSSSFETAFKLLHDQIGVKNFLPY 36
NL +T S+ +S+ + T ++ L+D++G+K L Y
Sbjct: 198 NLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSY 232
>sp|Q9JLC4|SORC1_MOUSE VPS10 domain-containing receptor SorCS1 OS=Mus musculus GN=Sorcs1
PE=2 SV=1
Length = 1167
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 2 NLHKVTSESINKSSSFETAFKLLHDQIGVKNFLPY 36
NL +T S+ +S+ + T ++ L+D++G+K L Y
Sbjct: 198 NLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSY 232
>sp|A8ZSB6|G6PI_DESOH Glucose-6-phosphate isomerase OS=Desulfococcus oleovorans (strain
DSM 6200 / Hxd3) GN=pgi PE=3 SV=1
Length = 546
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 48 RTAYSTLPLLAPVTAFPTRKVDRSSIDLIA------KIQQCYQLTTSGKFVDAIEKLRNV 101
R A ++ L V F ++VDR +IDL+ K+ Q +Q T+G V+ E R
Sbjct: 38 RLAEFSIQALDMVYDFSRQRVDRQAIDLLMELAWERKVTQRFQAMTTGAVVNTTEN-RAA 96
Query: 102 LICIPLLVVTTKKEIEEAKQIIN 124
L T ++ +AK+++N
Sbjct: 97 L-------HTACRDFSKAKRVVN 112
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 78 KIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEI 116
+I+Q QL +G F DA EKLR ++I L V K++
Sbjct: 235 EIRQMIQLALAGNFNDAREKLRELMINYGLSGVDVIKQV 273
>sp|Q2H0U8|CHO2_CHAGB Phosphatidylethanolamine N-methyltransferase OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=CHO2 PE=3 SV=1
Length = 946
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 5 KVTSESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVT 61
+ T+ES KS+ + +H+ +GV NF P+R S L ++ L L+ P T
Sbjct: 340 EATAESFRKSTKTPSTPLPVHNMVGVHNFDPFRITDYTSVLLV-GCFAALALVTPST 395
>sp|Q9JIW9|RALB_MOUSE Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1
Length = 206
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 75 LIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQI 122
L+ I + T + +F + I ++++ IPLLVV K ++EE +Q+
Sbjct: 91 LVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQV 138
>sp|B6YQA2|ISPD_AZOPC 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
OS=Azobacteroides pseudotrichonymphae genomovar. CFP2
GN=ispD PE=3 SV=1
Length = 222
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 51 YSTLPL---LAPVTAFPTRKVDRSSIDLIAKIQ--------QCYQLTTSGKFVDAIEKLR 99
Y +P+ L +T R V+RS L+ Q Y+ T+S F D I +
Sbjct: 130 YPAIPITDSLREITNRNNRTVNRSEFYLVQTPQVFLSDILINAYEATSSDNFTDDISVVE 189
Query: 100 NVLICIPLLVVTTKKEIE 117
+ IC P ++ +K I+
Sbjct: 190 SGKICTPTMIKGSKSNIK 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,739,736
Number of Sequences: 539616
Number of extensions: 1437662
Number of successful extensions: 3520
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3492
Number of HSP's gapped (non-prelim): 25
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)