RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2692
(133 letters)
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 320
Score = 117 bits (294), Expect = 4e-33
Identities = 64/129 (49%), Positives = 86/129 (66%), Gaps = 12/129 (9%)
Query: 16 SFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI-- 73
SFETA +LLHDQ+GV F PY+Q+FL +Y + RT Y LP L + +P R + +
Sbjct: 31 SFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKN 90
Query: 74 ----------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQII 123
DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV K+EI EA+Q+I
Sbjct: 91 GVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLI 150
Query: 124 NICKEYIVG 132
IC+EYIVG
Sbjct: 151 TICREYIVG 159
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_A
Length = 325
Score = 114 bits (287), Expect = 3e-32
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 16 SFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTR----KVDRS 71
+F+ A + L Q+GV P ++ F N Y RT + P P R V
Sbjct: 43 AFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSED 102
Query: 72 SI--------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQII 123
I + K+ + Y+ K AIE R + I LL+V ++ + A +I+
Sbjct: 103 QILPYVPGLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKIL 162
Query: 124 NICKEYIVG 132
+EYI+G
Sbjct: 163 ETAREYILG 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.001
Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 41/130 (31%)
Query: 16 SFETAFKLLHDQIGVKNFLPYRQMFLNSYL----QSRTAYSTLPLLA--P--VTAFPTRK 67
S E+ +++ YR M + + R+ Y ++A P V A +++
Sbjct: 1778 SIESLVEVVF----------YRGMTMQVAVPRDELGRSNYG---MIAINPGRVAASFSQE 1824
Query: 68 VDRSSIDLIAKIQQC------Y-----QLTTSGKFVDAIEKLRNVL-------I-CIPLL 108
+ ++ + K Y Q +G + A++ + NVL I I L
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD-LRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 109 VVTTKKEIEE 118
+ +E+E
Sbjct: 1884 KSLSLEEVEG 1893
Score = 28.9 bits (64), Expect = 0.56
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 51/129 (39%)
Query: 25 HDQIGVKN----FL---PYRQMF-LNSYL----------QSRTAYS-------------T 53
+I + N + P + ++ LN L QSR +S
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 54 LP----LLAPVTAFPTRKVDRSSIDLIAKIQQCYQL------TTSGK----FVDAI-EKL 98
P LL P + + + ++++ AK + T G +I E++
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAK-----DIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 99 RNVLICIPL 107
+ +I +P+
Sbjct: 480 VDCIIRLPV 488
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.007
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 28/131 (21%)
Query: 15 SSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSID 74
+K L I + P Y++ R L F V R +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMT--RMYIEQRD-----RLYNDNQVFAKYNVSR--LQ 135
Query: 75 LIAKIQQC-YQLTT-----------SGKFVDAIEKLRN--VLICIPLLV----VTTKKEI 116
K++Q +L SGK A++ + V + + +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 117 EEA-KQIINIC 126
E + + +
Sbjct: 196 ETVLEMLQKLL 206
Score = 26.7 bits (58), Expect = 3.3
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 22/113 (19%)
Query: 9 ESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKV 68
+ I S + L + K Q F+ L+ Y L ++ T +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMV-QKFVEEVLR--INYKFL-----MSPIKTEQR 103
Query: 69 DRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
S + + +++ ++L N V+ + + +Q
Sbjct: 104 QPSMM--------------TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.46
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Query: 45 LQSRTAYSTLPLLAPVTAFPTRKVDRSSID 74
LQ+ L L A +A P + +++++
Sbjct: 25 LQAS-----LKLYADDSA-PALAI-KATME 47
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 27.6 bits (61), Expect = 1.3
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 90 KFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKE 128
K VDA +L+ I ++ + K+I + E
Sbjct: 648 KLVDAAIELKADAILASTIISHDDIHYKNMKRIHELAVE 686
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 27.0 bits (60), Expect = 2.0
Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 11/83 (13%)
Query: 47 SRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIP 106
+ Y+ + +L + T+K+ + + L + ++ +R
Sbjct: 55 GKFGYTPVSVLKHLRNISTKKIAIMLNEKNTTPEDLNHLLLPI--IGLVDMIR------- 105
Query: 107 LLVVTTKKEIEEAKQIINICKEY 129
+ + I+ A + K
Sbjct: 106 --IAIDPQNIDRAIVLAKAIKTM 126
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 26.4 bits (59), Expect = 3.2
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 111 TTKKEIEEAKQIINICKEY 129
T++ E K + + +EY
Sbjct: 51 PTREMYEIGKTLRQLTREY 69
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Length = 98
Score = 25.6 bits (57), Expect = 3.5
Identities = 4/36 (11%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 102 LICIPLLVVTTKKEIEEAKQIINICKEY-----IVG 132
+ + K E+ + +++ + +VG
Sbjct: 23 PLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVG 58
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37,
MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C
2f66_C
Length = 192
Score = 25.9 bits (56), Expect = 4.0
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 3 LHKVTSESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAY 51
L + T + +SS ET + + + F+ +YL RT Y
Sbjct: 133 LEQNTKKLDEESSQLETTTRSIDSADDLDQFI-------KNYLDIRTQY 174
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in
bacteria); thermophilic, PEP-utilising enzyme,
transferase; 1.68A {Thermoanaerobacter tengcongensis}
PDB: 2bg5_A 2xz7_A*
Length = 324
Score = 25.6 bits (57), Expect = 6.0
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 100 NVLICIPLLVVTTKKEIEEAKQIINICKE 128
NV I P+ +++ +E+ +A I+ K
Sbjct: 136 NVQIMYPM--ISSVEEVRKANSILEEVKA 162
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 25.6 bits (57), Expect = 6.5
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 100 NVLICIPLLVVTTKKEIEEAKQIINICKE 128
+ I P+ + + +E+ ++ I I K+
Sbjct: 385 KLRIMFPM--IISVEEVRALRKEIEIYKQ 411
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm,
transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus aureus}
PDB: 2hro_A
Length = 572
Score = 25.6 bits (57), Expect = 7.2
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 100 NVLICIPLLVVTTKKEIEEAKQIINICKE 128
+ I P+ V T E EAK I+ KE
Sbjct: 387 KLNIMFPM--VATINEFREAKAILLEEKE 413
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.373
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,843,515
Number of extensions: 96795
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 18
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)