RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2692
         (133 letters)



>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
           {Campylobacter jejuni [TaxId: 197]}
          Length = 374

 Score = 26.5 bits (57), Expect = 0.98
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 80  QQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYI 130
           Q+ ++   +    ++ E      IC+P     +K ++ E   I  +  + I
Sbjct: 327 QEVFKGAKAYLNGNS-ELFFQKGICLPSGTAMSKDDVYE---ISKLILKSI 373


>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis
           protein C {Helicobacter pylori [TaxId: 210]}
          Length = 371

 Score = 25.5 bits (54), Expect = 2.4
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 5/52 (9%)

Query: 80  QQCYQ-LTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYI 130
            Q YQ L  +     A E   +  I +P       + ++    I +   +  
Sbjct: 321 YQLYQQLFNTAPLKSA-EDFYHAEISLPCHANLNLESVQ---NIAHSVLKTF 368


>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima
           [TaxId: 2336]}
          Length = 202

 Score = 23.8 bits (51), Expect = 7.8
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 97  KLRNVLICIPLLVVTTKKEIEEAKQIINICKE 128
           K+  +     ++ V     +EEAK+      E
Sbjct: 1   KMEELFKKHKIVAVLRANSVEEAKEKALAVFE 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 447,454
Number of extensions: 18333
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 7
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)