BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2693
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1
Length = 1224
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 12 VATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKY 71
VA Q RK+L+ C NPTD + ++YD HNPF ICA SY PIY G+ E C GA Y P++
Sbjct: 1137 VAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEF 1196
Query: 72 KGELCAVCTVSVIDTHRNAYGLQI 95
KG++C V TV+ I ++ GL+I
Sbjct: 1197 KGQICKVTTVTEIG--KDVIGLRI 1218
>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2
Length = 1224
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 12 VATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKY 71
VA Q RK+L+ C NPTD + ++YD HNPF ICA SY PIY G+ E C GA Y P++
Sbjct: 1137 VAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEF 1196
Query: 72 KGELCAVCTVSVIDTHRNAYGLQI 95
KG++C V TV+ I ++ GL+I
Sbjct: 1197 KGQICRVTTVTEIG--KDVIGLRI 1218
>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2
Length = 1224
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 12 VATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKY 71
VA Q RK+L+ C NPTD ++YD HNPF ICA SY PIY G+ E C GA Y P++
Sbjct: 1137 VAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEF 1196
Query: 72 KGELCAVCTVSVIDTHRNAYGLQI 95
KG++C V TV+ I ++ GL+I
Sbjct: 1197 KGQICRVTTVTEIG--KDVIGLRI 1218
>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1
Length = 1221
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 12 VATQARKLLAICNANPT--DEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLP 69
+ATQA+K+ PT D ++YDE NPF ICA SY PIY G C YC + YLP
Sbjct: 1133 LATQAKKVFNFAQQTPTPSDIQQLNYDERNPFVICAHSYVPIYKGSPLIKCPYCSSCYLP 1192
Query: 70 KYKGELCAVCTVSVIDTHRNAYGLQI 95
+KG++C+VC +S I ++ GLQ+
Sbjct: 1193 THKGKVCSVCQISEIG--KDVQGLQV 1216
>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1
SV=2
Length = 1216
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 11 PVATQA---RKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASY 67
PV +QA R+++ N TDE ++YD NPF +C +Y PIY G++ +C YC A +
Sbjct: 1125 PVDSQAKMARQVVQAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARF 1184
Query: 68 LPKYKGELCAVCTVSVI 84
+P +G +C VC ++VI
Sbjct: 1185 VPNQEGNICTVCDLAVI 1201
>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2
SV=1
Length = 1218
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 13 ATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYK 72
A AR+++ N TD T++YD NPF IC +Y PIY G++ AC YC A ++P +
Sbjct: 1132 ARTARQVMQAAERNMTDATTLNYDFRNPFVICGSTYVPIYKGQKDVACPYCTARFVPSQE 1191
Query: 73 GELCAVCTVSVIDTHRNAYGL 93
G +C+VC ++VI +A GL
Sbjct: 1192 GNICSVCDLAVIGA--DASGL 1210
>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica
GN=Os03g0711500 PE=2 SV=1
Length = 1218
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 13 ATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYK 72
A +AR++ C+ D ++YD NPF +C +Y PIY G++ +C YCG+ ++P +
Sbjct: 1133 ARRARQVQQQCSGK-KDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIE 1191
Query: 73 GELCAVCTVSVIDTHRNAYGLQICA 97
G+LC +C ++V+ +A GL +C+
Sbjct: 1192 GQLCTICELAVVGA--DASGL-VCS 1213
>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica
GN=Os03g0711400 PE=2 SV=1
Length = 1218
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 13 ATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYK 72
A +AR++ C+ D ++YD NPF +C +Y PIY G++ +C YCG+ ++P +
Sbjct: 1133 ARRARQVQQQCSGK-KDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIE 1191
Query: 73 GELCAVCTVSVIDTHRNAYGL 93
G+LC +C ++V+ +A GL
Sbjct: 1192 GQLCTICELAVVGA--DASGL 1210
>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica
GN=Os09g0127800 PE=2 SV=1
Length = 1218
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 13 ATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYK 72
A +AR++ C+ D ++YD NPF +C +Y PIY G++ +C YCG+ ++P +
Sbjct: 1133 AKRARQVQQQCSGK-KDSCELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIE 1191
Query: 73 GELCAVCTVSVIDTHRNAYGL 93
G+LC +C ++V+ +A GL
Sbjct: 1192 GQLCTICELAVVGA--DASGL 1210
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 11 PVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPK 70
P A A + + + + NP D I+YD H +IC ++ TP+Y G + + C CGA Y
Sbjct: 1123 PAAEAANRAITLGDRNPHDAFEIEYDPHVEMRICPKTLTPVYSGDDFDVCSVCGAVYHKG 1182
Query: 71 YKGELCAVCTVSVI 84
Y E+C VC V I
Sbjct: 1183 YVNEVCTVCDVGGI 1196
>sp|P53622|COPA_YEAST Coatomer subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=COP1 PE=1 SV=2
Length = 1201
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 11 PVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPK 70
P A QARK+ ++ +D ID+D + F ICA +Y PIY S + G+ Y+
Sbjct: 1117 PRAEQARKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVIT 1176
Query: 71 YKGELCAVCTVSVIDTHRNAYGLQI 95
K ++ + +S I A GL+I
Sbjct: 1177 EKDKIDRIAMISKIGAP--ASGLRI 1199
>sp|P18147|RPOL_BPK11 DNA-directed RNA polymerase OS=Enterobacteria phage K11 GN=1 PE=3
SV=1
Length = 906
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 46 RSYTPIYHGRESEACVYCGASYLPKYKG---ELCAVCTVSVI--DTHRNAYG 92
R+Y PI HG SE V GA L + +G E A+ T+ V+ + HR G
Sbjct: 101 RAYYPIKHGVASELAVSMGAEVLKEKRGVSSEAIALLTIKVVLGNAHRPLKG 152
>sp|B0UHX5|RPOC_METS4 DNA-directed RNA polymerase subunit beta' OS=Methylobacterium sp.
(strain 4-46) GN=rpoC PE=3 SV=1
Length = 1400
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 8 QIIPVATQARKLLAICNANPTDEHTIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCG 64
QI + K+L+ TI+Y P + CAR + PI + C+ CG
Sbjct: 20 QIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPI----KDYECL-CG 74
Query: 65 ASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATEHWMMK 121
KYKG +C C G+++ ++ D + +I+ + W +K
Sbjct: 75 KYKRMKYKGVICEKC------------GVEVTLARVRRDRMGHIELAAPVAHIWFLK 119
>sp|B1LY42|RPOC_METRJ DNA-directed RNA polymerase subunit beta' OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=rpoC PE=3 SV=1
Length = 1403
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 8 QIIPVATQARKLLAICNANPTDEHTIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCG 64
QI + K+L+ TI+Y P + CAR + PI + C+ CG
Sbjct: 20 QIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPI----KDYECL-CG 74
Query: 65 ASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATEHWMMK 121
KYKG +C C G+++ ++ D + +I+ + W +K
Sbjct: 75 KYKRMKYKGVICEKC------------GVEVTLARVRRDRMGHIELAAPVAHIWFLK 119
>sp|B1ZGS1|RPOC_METPB DNA-directed RNA polymerase subunit beta' OS=Methylobacterium
populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
GN=rpoC PE=3 SV=1
Length = 1405
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 8 QIIPVATQARKLLAICNANPTDEHTIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCG 64
QI + K+L+ TI+Y P + CAR + PI + C+ CG
Sbjct: 20 QIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPI----KDYECL-CG 74
Query: 65 ASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATEHWMMK 121
KYKG +C C G+++ ++ D + +I+ + W +K
Sbjct: 75 KYKRMKYKGVICEKC------------GVEVTLARVRRDRMGHIELAAPVAHIWFLK 119
>sp|B8IS79|RPOC_METNO DNA-directed RNA polymerase subunit beta' OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=rpoC PE=3 SV=1
Length = 1400
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 8 QIIPVATQARKLLAICNANPTDEHTIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCG 64
QI + K+L+ TI+Y P + CAR + PI + C+ CG
Sbjct: 20 QIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPI----KDYECL-CG 74
Query: 65 ASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATEHWMMK 121
KYKG +C C G+++ ++ D + +I+ + W +K
Sbjct: 75 KYKRMKYKGVICEKC------------GVEVTLARVRRDRMGHIELAAPVAHIWFLK 119
>sp|A9W8N9|RPOC_METEP DNA-directed RNA polymerase subunit beta' OS=Methylobacterium
extorquens (strain PA1) GN=rpoC PE=3 SV=1
Length = 1405
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 8 QIIPVATQARKLLAICNANPTDEHTIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCG 64
QI + K+L+ TI+Y P + CAR + PI + C+ CG
Sbjct: 20 QIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPI----KDYECL-CG 74
Query: 65 ASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATEHWMMK 121
KYKG +C C G+++ ++ D + +I+ + W +K
Sbjct: 75 KYKRMKYKGVICEKC------------GVEVTLARVRRDRMGHIELAAPVAHIWFLK 119
>sp|B7KN46|RPOC_METC4 DNA-directed RNA polymerase subunit beta' OS=Methylobacterium
chloromethanicum (strain CM4 / NCIMB 13688) GN=rpoC PE=3
SV=1
Length = 1405
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 8 QIIPVATQARKLLAICNANPTDEHTIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCG 64
QI + K+L+ TI+Y P + CAR + PI + C+ CG
Sbjct: 20 QIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPI----KDYECL-CG 74
Query: 65 ASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATEHWMMK 121
KYKG +C C G+++ ++ D + +I+ + W +K
Sbjct: 75 KYKRMKYKGVICEKC------------GVEVTLARVRRDRMGHIELAAPVAHIWFLK 119
>sp|B3QBZ9|RPOC_RHOPT DNA-directed RNA polymerase subunit beta' OS=Rhodopseudomonas
palustris (strain TIE-1) GN=rpoC PE=3 SV=1
Length = 1400
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|Q134R9|RPOC_RHOPS DNA-directed RNA polymerase subunit beta' OS=Rhodopseudomonas
palustris (strain BisB5) GN=rpoC PE=3 SV=1
Length = 1400
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|Q211D9|RPOC_RHOPB DNA-directed RNA polymerase subunit beta' OS=Rhodopseudomonas
palustris (strain BisB18) GN=rpoC PE=3 SV=1
Length = 1401
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|Q6N4S0|RPOC_RHOPA DNA-directed RNA polymerase subunit beta' OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=rpoC PE=3
SV=1
Length = 1402
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 46 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 95
>sp|Q07KK8|RPOC_RHOP5 DNA-directed RNA polymerase subunit beta' OS=Rhodopseudomonas
palustris (strain BisA53) GN=rpoC PE=3 SV=1
Length = 1400
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|Q2IXR9|RPOC_RHOP2 DNA-directed RNA polymerase subunit beta' OS=Rhodopseudomonas
palustris (strain HaA2) GN=rpoC PE=3 SV=1
Length = 1400
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|B6JES1|RPOC_OLICO DNA-directed RNA polymerase subunit beta' OS=Oligotropha
carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
GN=rpoC PE=3 SV=1
Length = 1399
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|Q3SSX9|RPOC_NITWN DNA-directed RNA polymerase subunit beta' OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=rpoC PE=3
SV=1
Length = 1399
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|Q1QN43|RPOC_NITHX DNA-directed RNA polymerase subunit beta' OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=rpoC PE=3 SV=1
Length = 1399
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|A4YSI2|RPOC_BRASO DNA-directed RNA polymerase subunit beta' OS=Bradyrhizobium sp.
(strain ORS278) GN=rpoC PE=3 SV=1
Length = 1399
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|A5ELN6|RPOC_BRASB DNA-directed RNA polymerase subunit beta' OS=Bradyrhizobium sp.
(strain BTAi1 / ATCC BAA-1182) GN=rpoC PE=3 SV=1
Length = 1399
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|Q89J75|RPOC_BRAJA DNA-directed RNA polymerase subunit beta' OS=Bradyrhizobium
japonicum (strain USDA 110) GN=rpoC PE=3 SV=1
Length = 1398
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C+V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGIICEKCSVEV 93
>sp|A4IXN6|FMT_FRATW Methionyl-tRNA formyltransferase OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=fmt PE=3 SV=1
Length = 313
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 59 ACVYCGASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATE 116
C+ S LPK++G + DT +Q+ AGL D++N ++ + T+
Sbjct: 106 GCLNIHVSLLPKWRGAAPIQRAIQAGDTKTGVCIMQMDAGLDTGDILNTLEIEIQETD 163
>sp|Q5NGC1|FMT_FRATT Methionyl-tRNA formyltransferase OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=fmt PE=3 SV=1
Length = 313
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 59 ACVYCGASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATE 116
C+ S LPK++G + DT +Q+ AGL D++N ++ + T+
Sbjct: 106 GCLNIHVSLLPKWRGAAPIQRAIQAGDTKTGVCIMQMDAGLDTGDILNTLEIEIQETD 163
>sp|Q14HS3|FMT_FRAT1 Methionyl-tRNA formyltransferase OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=fmt PE=3 SV=1
Length = 313
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 59 ACVYCGASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATE 116
C+ S LPK++G + DT +Q+ AGL D++N ++ + T+
Sbjct: 106 GCLNIHVSLLPKWRGAAPIQRAIQAGDTKTGVCIMQMDAGLDTGDILNTLEIEIQETD 163
>sp|Q0BLC5|FMT_FRATO Methionyl-tRNA formyltransferase OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=fmt PE=3 SV=1
Length = 313
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 59 ACVYCGASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATE 116
C+ S LPK++G + DT +Q+ AGL D++N ++ + T+
Sbjct: 106 GCLNIHVSLLPKWRGAAPIQRAIQAGDTKTGVCIMQMDAGLDTGDILNTLEIEIQETD 163
>sp|Q2A2U6|FMT_FRATH Methionyl-tRNA formyltransferase OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=fmt PE=3 SV=1
Length = 313
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 59 ACVYCGASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATE 116
C+ S LPK++G + DT +Q+ AGL D++N ++ + T+
Sbjct: 106 GCLNIHVSLLPKWRGAAPIQRAIQAGDTKTGVCIMQMDAGLDTGDILNTLEIEIQETD 163
>sp|A7NCY0|FMT_FRATF Methionyl-tRNA formyltransferase OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=fmt PE=3 SV=1
Length = 313
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 59 ACVYCGASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATE 116
C+ S LPK++G + DT +Q+ AGL D++N ++ + T+
Sbjct: 106 GCLNIHVSLLPKWRGAAPIQRAIQAGDTKTGVCIMQMDAGLDTGDILNTLEIEIQETD 163
>sp|B2SGG5|FMT_FRATM Methionyl-tRNA formyltransferase OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=fmt PE=3 SV=1
Length = 313
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 59 ACVYCGASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATE 116
C+ S LPK++G + DT +Q+ AGL D++N ++ + T+
Sbjct: 106 GCLNIHVSLLPKWRGAAPIQRAIQAGDTKTGVCIMQMDAGLDTGDILNTLEIEIQETD 163
>sp|Q98N65|RPOC_RHILO DNA-directed RNA polymerase subunit beta' OS=Rhizobium loti
(strain MAFF303099) GN=rpoC PE=3 SV=1
Length = 1398
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGVICEKCGVEV 93
>sp|Q11HB4|RPOC_MESSB DNA-directed RNA polymerase subunit beta' OS=Mesorhizobium sp.
(strain BNC1) GN=rpoC PE=3 SV=1
Length = 1399
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGVICEKCGVEV 93
>sp|B2IK56|RPOC_BEII9 DNA-directed RNA polymerase subunit beta' OS=Beijerinckia indica
subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=rpoC PE=3 SV=1
Length = 1394
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 32 TIDYDEHNPFQ---ICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSV 83
TI+Y P + CAR + PI + C+ CG KYKG +C C V V
Sbjct: 44 TINYRTFKPERDGLFCARIFGPI----KDYECL-CGKYKRMKYKGVICEKCGVEV 93
>sp|A0Q626|FMT_FRATN Methionyl-tRNA formyltransferase OS=Francisella tularensis subsp.
novicida (strain U112) GN=fmt PE=3 SV=1
Length = 313
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 59 ACVYCGASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATE 116
C+ S LPK++G + DT +Q+ AGL D++N ++ + T+
Sbjct: 106 GCLNIHVSLLPKWRGAAPIQRAIQAGDTKTGICIMQMDAGLDTGDILNTLEIEIQETD 163
>sp|A1WQ79|FMT_VEREI Methionyl-tRNA formyltransferase OS=Verminephrobacter eiseniae
(strain EF01-2) GN=fmt PE=3 SV=1
Length = 330
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 57 SEACVYCGASYLPKYKGELCAVCTVSVIDTHRNAYGLQICAGLMKSDVINNIDSSLAATE 116
+ C+ AS LP+++G + DTH +Q+ AGL ++ + S++A T+
Sbjct: 108 ARGCLNIHASLLPRWRGAAPIQRAIEAGDTHTGVTIMQMDAGLDTGAMLLSQGSAIAPTD 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,538,652
Number of Sequences: 539616
Number of extensions: 1718797
Number of successful extensions: 3877
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3848
Number of HSP's gapped (non-prelim): 42
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)