RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2693
         (122 letters)



>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
          thermophilus [TaxId: 274]}
          Length = 1504

 Score = 27.4 bits (60), Expect = 0.47
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 32 TIDYDEHNP-----FQICARSYTPIYHGRESEACVYCGASYLPKYKGELCAVCTVSVIDT 86
          TI+Y    P     F    R + PI   ++ E C  CG     +++G++C  C V V  +
Sbjct: 30 TINYRTLKPERDGLF--DERIFGPI---KDYE-C-ACGKYKRQRFEGKVCERCGVEVTKS 82


>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli
           [TaxId: 562]}
          Length = 416

 Score = 26.3 bits (58), Expect = 1.1
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 21  AICNANPTDEHTIDYDEHNPFQICARSYT 49
            + +      H ID  E   F I A SYT
Sbjct: 208 EVISEKLNPAHHIDAVESKLFGIGAESYT 236


>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId:
          219653]}
          Length = 168

 Score = 24.6 bits (53), Expect = 3.6
 Identities = 6/37 (16%), Positives = 12/37 (32%)

Query: 9  IIPVATQARKLLAICNANPTDEHTIDYDEHNPFQICA 45
          ++ V +  R    I + +    +    D H    I  
Sbjct: 56 VVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEV 92


>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 212

 Score = 24.0 bits (50), Expect = 5.5
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 3   ILAKFQIIPVATQARKLLAICNANPTDEHTIDYDE 37
           +  K+  I     AR L  +          ++ DE
Sbjct: 170 LPGKYHGIEACDLARALWRLALEEGKGVRFVESDE 204


>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId:
           4932]}
          Length = 135

 Score = 23.2 bits (50), Expect = 7.7
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 31  HTIDYDEHNPFQICARSYTPIYHGRESEAC 60
            +   D   PF I  +++        +EAC
Sbjct: 105 LSFTLDYVYPFTIIKQNFNKFMQKLLNEAC 134


>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita
           pepo var. medullosa) [TaxId: 3663]}
          Length = 209

 Score = 23.6 bits (50), Expect = 8.1
 Identities = 5/38 (13%), Positives = 10/38 (26%)

Query: 9   IIPVATQARKLLAICNANPTDEHTIDYDEHNPFQICAR 46
           I  V+ +    + I +             H    + A 
Sbjct: 76  IFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEAD 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 461,996
Number of extensions: 19190
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 10
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)