Query psy2694
Match_columns 262
No_of_seqs 166 out of 1159
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 22:48:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1470|consensus 100.0 1.3E-31 2.9E-36 247.1 16.9 164 13-185 47-211 (324)
2 KOG1471|consensus 99.9 3.2E-26 6.9E-31 210.9 14.0 183 2-192 33-230 (317)
3 PF00650 CRAL_TRIO: CRAL/TRIO 99.8 1.3E-19 2.8E-24 149.3 5.7 123 66-190 5-130 (159)
4 smart00516 SEC14 Domain in hom 99.7 1.4E-16 3.1E-21 131.0 10.1 107 74-185 14-123 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.6 2E-15 4.4E-20 122.0 9.6 115 68-185 9-125 (157)
6 PF03765 CRAL_TRIO_N: CRAL/TRI 98.6 7.3E-08 1.6E-12 67.3 4.2 29 11-39 27-55 (55)
7 PF13716 CRAL_TRIO_2: Divergen 97.4 0.00017 3.7E-09 59.2 4.2 82 71-162 5-86 (149)
8 PF02845 CUE: CUE domain; Int 78.3 4.6 0.0001 26.3 4.0 28 11-38 13-40 (42)
9 smart00546 CUE Domain that may 76.9 4.7 0.0001 26.3 3.8 27 11-37 14-40 (43)
10 KOG4406|consensus 73.7 25 0.00054 34.6 9.2 103 67-186 80-192 (467)
11 PF14555 UBA_4: UBA-like domai 69.9 7.2 0.00016 25.5 3.4 24 13-36 13-36 (43)
12 PF00627 UBA: UBA/TS-N domain; 57.7 18 0.00038 22.7 3.4 23 14-36 15-37 (37)
13 cd00194 UBA Ubiquitin Associat 53.8 23 0.0005 22.0 3.4 24 13-36 13-36 (38)
14 smart00165 UBA Ubiquitin assoc 52.8 24 0.00052 21.8 3.4 24 13-36 13-36 (37)
15 PF14213 DUF4325: Domain of un 51.8 38 0.00082 24.6 4.8 53 120-179 16-72 (74)
16 PF03474 DMA: DMRTA motif; In 41.7 49 0.0011 21.7 3.5 24 13-36 15-38 (39)
17 COG1219 ClpX ATP-dependent pro 32.4 32 0.00069 33.2 2.2 47 15-64 144-196 (408)
18 COG2355 Zn-dependent dipeptida 28.3 4.2E+02 0.0092 25.1 8.9 106 52-176 200-311 (313)
19 PF13082 DUF3931: Protein of u 26.5 65 0.0014 22.7 2.4 21 70-90 40-60 (66)
20 PF14350 Beta_protein: Beta pr 25.0 2.2E+02 0.0047 26.6 6.5 64 108-174 142-206 (347)
21 COG3950 Predicted ATP-binding 23.5 52 0.0011 32.0 1.9 47 121-175 296-342 (440)
No 1
>KOG1470|consensus
Probab=99.98 E-value=1.3e-31 Score=247.14 Aligned_cols=164 Identities=20% Similarity=0.297 Sum_probs=147.7
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCccccccCCCChHHHHHHHHcCCCeeccccCCCCCEEEEEeccccCC
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANNWDH 92 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~peif~~~dp~~~~l~~~l~~g~~~~Lpg~Dk~GrpViI~r~g~~dp 92 (262)
.+|.+++||||||||||++|.+||.+++.||+.+.. ... ....++...+++|.++.+ |+|++||||+|+++..+.+
T Consensus 47 ~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~--~~~-~~~~Ev~~e~~tGK~yi~-G~D~~gRPVl~~~~~~~~q 122 (324)
T KOG1470|consen 47 CSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGP--EEV-IEADEVAAELETGKAYIL-GHDKDGRPVLYLRPRPHRQ 122 (324)
T ss_pred CcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCC--ccc-cCHHHHHHHhhcCcEEEe-cccCCCCeEEEEecCCCCC
Confidence 579999999999999999999999999999999853 111 222458889999999877 6999999999999999889
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHHHHhhcCCcccc-cccccchhh
Q psy2694 93 TRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSF-IKSGFSSFI 171 (262)
Q Consensus 93 ~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~ilQd~YPeR~~-~~~~~~~~~ 171 (262)
+.-+..+..|++++++|.++.....+++++++++|++|||++ ++ +...+|.+++++|+|||||++ .+.++.|||
T Consensus 123 n~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~s---N~--d~~~~k~~~~~lq~hYPErLg~a~l~~~P~i 197 (324)
T KOG1470|consen 123 NTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMS---NP--DIKFLKELLHILQDHYPERLGKALLVNAPWI 197 (324)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCccc---CC--CcHHHHHHHHHHHHhChHHhhhhhhcCChHH
Confidence 999999999999999999988766667999999999999995 78 999999999999999999999 788888999
Q ss_pred hhhhhhhHHHHHHH
Q psy2694 172 KSGISSFIKSGISS 185 (262)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (262)
|.++|++||+||.-
T Consensus 198 F~~~wkiikpflDp 211 (324)
T KOG1470|consen 198 FQPFWKIIKPFLDP 211 (324)
T ss_pred HHHHHHHhhhccCh
Confidence 99999999999843
No 2
>KOG1471|consensus
Probab=99.94 E-value=3.2e-26 Score=210.91 Aligned_cols=183 Identities=20% Similarity=0.285 Sum_probs=146.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHC--ccccccCCCChHHHHHHHHcCCCeeccccCCCC
Q psy2694 2 SKRSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH--AEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKG 79 (262)
Q Consensus 2 ~k~PhL~~p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~--peif~~~dp~~~~l~~~l~~g~~~~Lpg~Dk~G 79 (262)
.++||+.. ...||.+|+||||||+||+|+|++++.+++.||.++ ++++.+.+..+ ++. + .+...+++.|++|
T Consensus 33 ~~~~~l~~-~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~~-~~~---~-~~~~~~~~~~~~g 106 (317)
T KOG1471|consen 33 LQKPHLPN-KYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEEDD-ELL---K-YYPQGLHGVDKEG 106 (317)
T ss_pred hhccCCCC-CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccch-hhh---h-hccccccccCCCC
Confidence 57899942 368999999999999999999999999998888886 56666533322 222 1 2344567888899
Q ss_pred CEEEEEeccccCCCCC------------CHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHH
Q psy2694 80 RRILVFFANNWDHTRY------------TLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVR 147 (262)
Q Consensus 80 rpViI~r~g~~dp~~~------------s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lK 147 (262)
+||++-+.|..++... ...++.+...+.+|....+.+.+++|++.|+|++|++++|+++. .+..++
T Consensus 107 ~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~--~~~~~~ 184 (317)
T KOG1471|consen 107 RPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKP--APTLLK 184 (317)
T ss_pred CEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHH--HHHHHH
Confidence 9999888888776532 45556666667777766666778999999999999999999999 999999
Q ss_pred HHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhhHH
Q psy2694 148 TMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSDLS 192 (262)
Q Consensus 148 k~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (262)
+++.++|++||+++. +...|.|+++..+|+++|++++.=.++++.
T Consensus 185 ~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~ 230 (317)
T KOG1471|consen 185 KILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIH 230 (317)
T ss_pred HHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhhe
Confidence 999999999999987 999999999999999988876644444443
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.78 E-value=1.3e-19 Score=149.30 Aligned_cols=123 Identities=15% Similarity=0.221 Sum_probs=98.0
Q ss_pred cCCCeeccccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhc-cCC-CCcCcEEEEEeCCCCCcccccCCcCCH
Q psy2694 66 DGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLL-DTQ-NQMNGLIFIVDWGNLTLRQTSNNINSF 143 (262)
Q Consensus 66 ~g~~~~Lpg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~-e~~-~qi~GivvIiDl~G~Slshl~~l~~~~ 143 (262)
.+...+++|+|++||||++.+++++|+++++.++++|+.++++|.+++ .++ .+++|+++|+|++|++++|+.+. ++
T Consensus 5 ~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~--~~ 82 (159)
T PF00650_consen 5 KSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWW--PI 82 (159)
T ss_dssp TTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCH--HH
T ss_pred CCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccc--hh
Confidence 455678889999999999999999999999999999999999999885 333 67899999999999999888777 68
Q ss_pred HHHHHHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhh
Q psy2694 144 KQVRTMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSD 190 (262)
Q Consensus 144 ~~lKk~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (262)
+.+|.+++++|++||+|.. +...+.|++++.+|++++++++.=++++
T Consensus 83 ~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~k 130 (159)
T PF00650_consen 83 SFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREK 130 (159)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCT
T ss_pred hhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhhee
Confidence 9999999999999999988 9999999999999999998776555444
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.69 E-value=1.4e-16 Score=131.03 Aligned_cols=107 Identities=20% Similarity=0.294 Sum_probs=97.5
Q ss_pred ccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhcc--CCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHH
Q psy2694 74 NRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLD--TQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLE 151 (262)
Q Consensus 74 g~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e--~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~ 151 (262)
|+|++||||+++++++++++..+.+++++++++++|.++.+ +..+++|+++|+|++|++++| + +++.+|++++
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~--~~~~lk~~~~ 88 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN---P--DLSVLRKILK 88 (158)
T ss_pred CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc---c--cHHHHHHHHH
Confidence 79999999999999999999999999999999999999876 677899999999999999975 6 8999999999
Q ss_pred HHhhcCCcccc-cccccchhhhhhhhhhHHHHHHH
Q psy2694 152 VQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISS 185 (262)
Q Consensus 152 ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~ 185 (262)
.+|++||+|.. +..-+.|+++..+|++++++++.
T Consensus 89 ~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~ 123 (158)
T smart00516 89 ILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDE 123 (158)
T ss_pred HHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcCh
Confidence 99999999977 88888899999988887766544
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.62 E-value=2e-15 Score=121.97 Aligned_cols=115 Identities=22% Similarity=0.305 Sum_probs=99.0
Q ss_pred CCeeccccCCCCCEEEEEeccccCCCC-CCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHH
Q psy2694 68 LPGVLSNRDRKGRRILVFFANNWDHTR-YTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQV 146 (262)
Q Consensus 68 ~~~~Lpg~Dk~GrpViI~r~g~~dp~~-~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~l 146 (262)
.+.+..++|++||||++.++++.++.. .+.++++++.++.+|.++.++..+.+|+++|+|++|++++++. . +++.+
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~-~--~~~~~ 85 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLL-P--DPSLL 85 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccc-h--hHHHH
Confidence 445566689999999999999655544 4558999999999999998877777899999999999999887 6 88999
Q ss_pred HHHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHH
Q psy2694 147 RTMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISS 185 (262)
Q Consensus 147 Kk~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~ 185 (262)
|++++.+|++||+++. +..-+.|+++..+|++++++++.
T Consensus 86 k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~ 125 (157)
T cd00170 86 KKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSE 125 (157)
T ss_pred HHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCH
Confidence 9999999999999977 88888899999999998775543
No 6
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.57 E-value=7.3e-08 Score=67.32 Aligned_cols=29 Identities=45% Similarity=0.713 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy2694 11 PYNTDEFLTRFLYARKMNVDKSFDLLCNY 39 (262)
Q Consensus 11 ~~~DD~~LLRFLRArKfdvekAkk~L~~y 39 (262)
...+|.+|+||||||+|||++|.+||.+|
T Consensus 27 ~~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 27 EDHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp SS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 34799999999999999999999999886
No 7
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=97.41 E-value=0.00017 Score=59.20 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=51.8
Q ss_pred eccccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHH
Q psy2694 71 VLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTML 150 (262)
Q Consensus 71 ~Lpg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l 150 (262)
.-.|+|++||||+++...+. ++.. +..+++.+++..+..+ ....++++|+|+++.+.. ... +...++++.
T Consensus 5 ~~gG~d~~g~pV~~~~~~~~-~~~~---~~~~ll~yl~~~l~~~--~~~~~f~vVid~~~~~~~--~~~--~~~~l~~~~ 74 (149)
T PF13716_consen 5 YPGGRDREGRPVVVFIASRL-PSSD---DLERLLLYLLSTLSEE--VVDKPFSVVIDHTGFSRS--SEP--SLSWLKQLY 74 (149)
T ss_dssp EEEEEBTTS-EEEEEEGGG--C-TT---HHHHHHHHHHHHH-TT--TTTS-EEEEEE-TT--GG--G-----HHHHHHTT
T ss_pred EecccCCCcCEEEEEECCcC-cchh---hHHHHHHHHHHhhhHH--hcCCCEEEEEEcCCCccc--cCC--chHHHHHHH
Confidence 34579999999999998877 4333 5556666666655333 224679999999999884 344 678899998
Q ss_pred HHHhhcCCcccc
Q psy2694 151 EVQVNISNFSSF 162 (262)
Q Consensus 151 ~ilQd~YPeR~~ 162 (262)
+.++..|+.+.-
T Consensus 75 ~~l~~~~~~nl~ 86 (149)
T PF13716_consen 75 KLLPRKYKKNLK 86 (149)
T ss_dssp TSS-HHHHHTEE
T ss_pred HHHHHHHhhceE
Confidence 888888888754
No 8
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=78.31 E-value=4.6 Score=26.25 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 11 PYNTDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 11 ~~~DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
|..++..+..-|+++++|+|.|.+.|-.
T Consensus 13 P~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 13 PDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp SSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4578999999999999999999987753
No 9
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=76.92 E-value=4.7 Score=26.29 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHhhcCCCHHHHHHHHH
Q psy2694 11 PYNTDEFLTRFLYARKMNVDKSFDLLC 37 (262)
Q Consensus 11 ~~~DD~~LLRFLRArKfdvekAkk~L~ 37 (262)
|..++..+.+-|++++.|++.|.+.|.
T Consensus 14 P~l~~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 14 PNLDEEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457999999999999999999998774
No 10
>KOG4406|consensus
Probab=73.72 E-value=25 Score=34.61 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=66.1
Q ss_pred CCCeeccc-cCCCCCEEEEEeccccCCC-CCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHH
Q psy2694 67 GLPGVLSN-RDRKGRRILVFFANNWDHT-RYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFK 144 (262)
Q Consensus 67 g~~~~Lpg-~Dk~GrpViI~r~g~~dp~-~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~ 144 (262)
+...+..+ .|++||+|+++...+..+. +.+-..++++.++.+|..++++ .+.++=-.|...
T Consensus 80 ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~D------Yt~vYfh~gl~s----------- 142 (467)
T KOG4406|consen 80 EILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVEND------YTLVYFHHGLPS----------- 142 (467)
T ss_pred heeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhcc------ceeeehhcCCcc-----------
Confidence 44445544 5999999999998887553 3333448899999999988765 333332333333
Q ss_pred HHHHHHHHHhhcCC-------cccc-cccccchhhhhhhhhhHHHHHHHH
Q psy2694 145 QVRTMLEVQVNISN-------FSSF-IKSGFSSFIKSGISSFIKSGISSF 186 (262)
Q Consensus 145 ~lKk~l~ilQd~YP-------eR~~-~~~~~~~~~~~~~~~~~~~~~~~~ 186 (262)
..|..+++++++|= -.++ +-.-+..|.-.-||...||.|+.=
T Consensus 143 ~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~K 192 (467)
T KOG4406|consen 143 DNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLK 192 (467)
T ss_pred cccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchh
Confidence 22222333333333 3355 666777999999999999999753
No 11
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=69.94 E-value=7.2 Score=25.53 Aligned_cols=24 Identities=8% Similarity=0.311 Sum_probs=19.9
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLL 36 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L 36 (262)
.++.....||.+++||++.|....
T Consensus 13 ~~~~~A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 13 ADEDVAIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp SSHHHHHHHHHHTTT-HHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 367889999999999999998763
No 12
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=57.66 E-value=18 Score=22.74 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=17.5
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLL 36 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L 36 (262)
+.....+-|+++++|+++|.+.|
T Consensus 15 ~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 15 SREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp -HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHhC
Confidence 45577888899999999888754
No 13
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=53.77 E-value=23 Score=21.98 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.5
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLL 36 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L 36 (262)
.+....++-|+++++|+++|.+.|
T Consensus 13 f~~~~~~~AL~~~~~d~~~A~~~L 36 (38)
T cd00194 13 FSREEARKALRATNNNVERAVEWL 36 (38)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 357788999999999999998765
No 14
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=52.81 E-value=24 Score=21.78 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=19.8
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLL 36 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L 36 (262)
.++...++-|+++++|+++|.+.|
T Consensus 13 f~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 13 FSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 456788999999999999997754
No 15
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=51.77 E-value=38 Score=24.56 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=38.6
Q ss_pred CcEEEEEeCCCCCcccccCCcCCHHHHHHHHHHHhhcCC----cccccccccchhhhhhhhhhH
Q psy2694 120 NGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISN----FSSFIKSGFSSFIKSGISSFI 179 (262)
Q Consensus 120 ~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~ilQd~YP----eR~~~~~~~~~~~~~~~~~~~ 179 (262)
.|-.+++|++|+.. + +.+++-.++.-+...|| .+.-...+..+-+..+|.+.+
T Consensus 16 ~~~~V~lDF~gv~~-----~--~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~~vi 72 (74)
T PF14213_consen 16 EGEKVVLDFEGVES-----I--TSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIKRVI 72 (74)
T ss_pred cCCeEEEECCCccc-----c--cHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHHHHH
Confidence 34458999999965 4 77888888888888899 444455666677777765543
No 16
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=41.67 E-value=49 Score=21.73 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=21.0
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLL 36 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L 36 (262)
-....|..-|+.|+.||-+|.+.+
T Consensus 15 ~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 15 QKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred CChHHHHHHHHHcCCcHHHHHHHh
Confidence 566789999999999999998864
No 17
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.44 E-value=32 Score=33.17 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHH------HHHHHHHHHCccccccCCCChHHHHHHH
Q psy2694 15 DEFLTRFLYARKMNVDKSFDLL------CNYITYRTNHAEFFDNLTVSNRQIQCAI 64 (262)
Q Consensus 15 D~~LLRFLRArKfdvekAkk~L------~~yl~wR~~~peif~~~dp~~~~l~~~l 64 (262)
+..|+|.|.+++|||++|.+-| ++ ..-+.++|. .++|++.+.+|+.+
T Consensus 144 ENillkLlqaadydV~rAerGIIyIDEIDK-IarkSeN~S--ITRDVSGEGVQQAL 196 (408)
T COG1219 144 ENILLKLLQAADYDVERAERGIIYIDEIDK-IARKSENPS--ITRDVSGEGVQQAL 196 (408)
T ss_pred HHHHHHHHHHcccCHHHHhCCeEEEechhh-hhccCCCCC--cccccCchHHHHHH
Confidence 6789999999999999998643 33 222334564 36777777777654
No 18
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=28.26 E-value=4.2e+02 Score=25.08 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=66.5
Q ss_pred cCCCChHHHHHHHHcCCCeec---cccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeC
Q psy2694 52 NLTVSNRQIQCAIKDGLPGVL---SNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDW 128 (262)
Q Consensus 52 ~~dp~~~~l~~~l~~g~~~~L---pg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl 128 (262)
.++..+.+++.+.++|=+..+ |...+.|+ ...-+++++++++.+++|.. +.+.+.+=-|+
T Consensus 200 ~RNl~D~qlkaI~~~gGvIgv~~~~~fl~~~~-----------~~~atldd~v~hI~h~v~~~------G~dhVglGsDf 262 (313)
T COG2355 200 PRNLSDEQLKAIAETGGVIGVNFIPAFLRPGG-----------AARATLDDLVRHIDHFVELV------GIDHVGLGSDF 262 (313)
T ss_pred CCCCCHHHHHHHHhcCCEEEEEeehhhccCCC-----------CCCCCHHHHHHHHHHHHHhc------CcceeEecccc
Confidence 355677888888776544322 22222132 23458999999999999984 34556666788
Q ss_pred CCCCcccccCCcCCHHHHHHHHHHHhhc-CCcccc--cccccchhhhhhhh
Q psy2694 129 GNLTLRQTSNNINSFKQVRTMLEVQVNI-SNFSSF--IKSGFSSFIKSGIS 176 (262)
Q Consensus 129 ~G~Slshl~~l~~~~~~lKk~l~ilQd~-YPeR~~--~~~~~~~~~~~~~~ 176 (262)
.|.+..- .-+.++..+.+++.-+.+. |++..- +...|+-.+.+-.|
T Consensus 263 ~g~~~~p--~gled~~~l~~l~~~L~~~G~~e~~i~~i~~~N~lRV~~~~~ 311 (313)
T COG2355 263 DGGTGPP--DGLEDVGKLPNLTAALIERGYSEEEIEKIAGENWLRVLKEVW 311 (313)
T ss_pred cCCCCCc--hhhcChhHHHHHHHHHHHcCCCHHHHHHHHHHhHHHHHHHHh
Confidence 7777620 1113666777777666665 998844 77777766655544
No 19
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=26.54 E-value=65 Score=22.66 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.4
Q ss_pred eeccccCCCCCEEEEEecccc
Q psy2694 70 GVLSNRDRKGRRILVFFANNW 90 (262)
Q Consensus 70 ~~Lpg~Dk~GrpViI~r~g~~ 90 (262)
++|.|.+++||++++..+-..
T Consensus 40 fvlcgetpdgrrlvlthmist 60 (66)
T PF13082_consen 40 FVLCGETPDGRRLVLTHMIST 60 (66)
T ss_pred EEEEccCCCCcEEEEEEEecc
Confidence 578899999999999886543
No 20
>PF14350 Beta_protein: Beta protein
Probab=24.98 E-value=2.2e+02 Score=26.59 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=41.1
Q ss_pred HHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHHHHhhcCCcccccccccc-hhhhhh
Q psy2694 108 LDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFS-SFIKSG 174 (262)
Q Consensus 108 lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~ilQd~YPeR~~~~~~~~-~~~~~~ 174 (262)
++.++.......+.+.+|+|+..+.-+..... ...+...+.-+.+.+|.+..+..+-+ |--.++
T Consensus 142 i~~i~~~l~~~~~~~~lilD~~~i~~~~~~~~---~~~~~~~l~~l~~~~~~~~v~v~~tSfP~s~~~ 206 (347)
T PF14350_consen 142 ISRILAALGLSPNEVDLILDLGDIRDSDESAV---AEAIIRALNSLPSLFPWRSVIVAGTSFPSSISG 206 (347)
T ss_pred HHHHHHHcCCCccceEEEEECCccCCcchHHH---HHHHHHHHHhhhhccCCeEEEEEecccCCcccc
Confidence 33333333333578999999999998644333 33344457788888999988776666 544444
No 21
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=23.53 E-value=52 Score=32.04 Aligned_cols=47 Identities=21% Similarity=0.095 Sum_probs=36.5
Q ss_pred cEEEEEeCCCCCcccccCCcCCHHHHHHHHHHHhhcCCcccccccccchhhhhhh
Q psy2694 121 GLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFSSFIKSGI 175 (262)
Q Consensus 121 GivvIiDl~G~Slshl~~l~~~~~~lKk~l~ilQd~YPeR~~~~~~~~~~~~~~~ 175 (262)
.-++++|==++- + .|.=-.++++.++.+||+-+||.+-|+|++.+-+
T Consensus 296 pgivLiDeIdlf------l--hP~WQQqi~qkL~saFp~IQfIvstHsP~vlsTv 342 (440)
T COG3950 296 PGIVLIDEIDLF------L--HPKWQQQINQKLLSAFPEIQFIVSTHSPFVLSTV 342 (440)
T ss_pred CceEEeehhhhh------c--CHHHHHHHHHHHHhhchhhhhhhhcCCceEEEec
Confidence 345555544433 3 7777788999999999999999999999988764
Done!