Query psy2694
Match_columns 262
No_of_seqs 166 out of 1159
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:49:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 100.0 4.9E-39 1.7E-43 296.2 13.3 186 1-190 69-264 (316)
2 1r5l_A Alpha-TTP, protein (alp 100.0 2.5E-37 8.7E-42 274.5 14.4 177 10-190 28-205 (262)
3 1aua_A Phosphatidylinositol tr 100.0 2.2E-32 7.6E-37 248.0 11.6 180 3-191 43-237 (296)
4 1olm_A SEC14-like protein 2; l 100.0 6.9E-32 2.4E-36 254.9 11.2 176 5-191 28-217 (403)
5 3q8g_A CRAL-TRIO domain-contai 100.0 1.2E-31 4E-36 247.7 10.2 183 2-191 51-252 (320)
6 3pg7_A Neurofibromin; SEC lipi 97.0 0.00079 2.7E-08 59.9 5.8 96 69-174 12-109 (256)
7 3peg_A Neurofibromin; SEC14 do 97.0 0.00034 1.2E-08 63.5 3.3 98 66-173 28-127 (290)
8 1wgl_A TOLL-interacting protei 79.7 2.3 7.8E-05 29.3 4.1 28 11-38 21-48 (59)
9 2dhy_A CUE domain-containing p 67.1 6.1 0.00021 27.9 3.8 29 11-39 30-58 (67)
10 1z96_A DNA-damage, UBA-domain 62.9 8.6 0.00029 23.3 3.6 23 14-36 17-39 (40)
11 1otr_A Protein CUE2; protein-p 59.1 10 0.00035 25.1 3.5 28 11-38 16-43 (49)
12 2knz_A Ubiquilin-4; cytoplasm, 58.2 11 0.00038 24.9 3.7 25 14-38 25-49 (53)
13 2dna_A Unnamed protein product 55.9 14 0.00048 26.0 4.0 26 13-38 32-57 (67)
14 1wr1_B Ubiquitin-like protein 55.1 13 0.00045 25.3 3.7 26 13-38 30-55 (58)
15 2bwb_A Ubiquitin-like protein 54.8 12 0.00042 24.1 3.4 25 13-37 20-44 (46)
16 1ify_A HHR23A, UV excision rep 51.8 13 0.00045 24.1 3.2 25 14-38 21-45 (49)
17 2dah_A Ubiquilin-3; UBA domain 50.1 18 0.00061 24.1 3.7 25 14-38 23-47 (54)
18 2jy5_A Ubiquilin-1; UBA, alter 48.7 17 0.00058 23.9 3.4 23 14-36 26-48 (52)
19 2di0_A Activating signal coint 48.5 20 0.0007 25.5 3.9 28 11-38 25-52 (71)
20 1vej_A Riken cDNA 4931431F19; 47.4 19 0.00066 25.7 3.7 24 14-37 43-66 (74)
21 1v92_A NSFL1 cofactor P47; 3-h 45.6 18 0.00061 22.7 3.0 23 13-35 18-40 (46)
22 2g3q_A Protein YBL047C; endocy 44.8 21 0.00071 22.2 3.2 24 14-37 17-40 (43)
23 1wji_A Tudor domain containing 43.6 29 0.00099 23.8 4.0 25 14-38 22-46 (63)
24 1q02_A Sequestosome 1; helical 43.4 17 0.00058 24.4 2.6 25 13-37 24-48 (52)
25 2dal_A Protein KIAA0794; FAS a 41.5 28 0.00096 23.7 3.7 23 13-35 28-50 (62)
26 1vg5_A RSGI RUH-014, rhomboid 40.8 24 0.00083 25.1 3.3 22 15-36 43-64 (73)
27 2cwb_A Chimera of immunoglobul 40.7 25 0.00087 26.9 3.7 26 13-38 79-104 (108)
28 1veg_A NEDD8 ultimate buster-1 34.8 49 0.0017 24.1 4.2 24 15-38 43-66 (83)
29 3c0t_B Mediator of RNA polymer 34.7 17 0.0006 21.4 1.4 11 188-198 10-20 (33)
30 2dzl_A Protein FAM100B; UBA-li 34.1 43 0.0015 23.2 3.7 23 13-35 30-52 (66)
31 2dam_A ETEA protein; KIAA0887, 33.2 37 0.0013 23.5 3.3 23 13-35 32-54 (67)
32 1wgn_A UBAP1, ubiquitin associ 32.3 40 0.0014 23.4 3.2 24 14-37 32-55 (63)
33 1wiv_A UBP14, ubiquitin-specif 31.2 54 0.0018 23.0 3.9 19 18-36 46-64 (73)
34 2dak_A Ubiquitin carboxyl-term 30.5 54 0.0019 22.1 3.7 25 14-38 22-46 (63)
35 3e21_A HFAF1, FAS-associated f 26.3 44 0.0015 21.5 2.4 21 14-34 19-40 (45)
36 2cp8_A NEXT to BRCA1 gene 1 pr 26.3 92 0.0031 20.9 4.1 26 13-38 22-47 (54)
37 3kdg_A DNA mismatch repair pro 25.9 78 0.0027 26.1 4.6 31 55-85 153-183 (197)
38 1ufz_A Hypothetical protein BA 25.0 83 0.0029 23.0 4.0 27 13-39 49-75 (83)
39 2d9s_A CBL E3 ubiquitin protei 24.7 1E+02 0.0035 20.6 4.1 28 13-40 21-48 (53)
40 3seo_A VOPL C terminal domain 24.1 25 0.00085 30.3 1.1 29 180-212 199-227 (241)
41 2ooa_A E3 ubiquitin-protein li 22.9 1.2E+02 0.0041 20.2 4.1 27 13-39 23-49 (52)
42 2cpw_A CBL-interacting protein 21.5 94 0.0032 21.1 3.6 23 14-36 32-55 (64)
43 1oai_A Nuclear RNA export fact 21.4 1.5E+02 0.0053 19.8 4.6 28 13-40 20-47 (59)
44 3dct_B Nuclear receptor coacti 21.1 52 0.0018 17.7 1.6 14 13-26 3-16 (21)
45 1dv0_A DNA repair protein HHR2 20.4 82 0.0028 20.1 2.9 24 13-36 16-39 (47)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=4.9e-39 Score=296.18 Aligned_cols=186 Identities=25% Similarity=0.470 Sum_probs=168.3
Q ss_pred CCCCCCCC--C-------CCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCccccccCCCChHHHHHHHHcCCCee
Q psy2694 1 MSKRSDID--F-------NPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGV 71 (262)
Q Consensus 1 l~k~PhL~--~-------p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~peif~~~dp~~~~l~~~l~~g~~~~ 71 (262)
|++|||+. + +++.||.+|+|||||||||+++|+++|++|++||+++|++|++.++ +++++.++.|++++
T Consensus 69 i~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~--~~i~~~l~~g~~~~ 146 (316)
T 3hx3_A 69 VQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP--EAVRCTIEAGYPGV 146 (316)
T ss_dssp HHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCH--HHHHHHHHTTSSEE
T ss_pred HHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCH--HHHHHHHHcCCccc
Confidence 35788872 1 1458999999999999999999999999999999999998887765 56888899999999
Q ss_pred ccccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHH
Q psy2694 72 LSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLE 151 (262)
Q Consensus 72 Lpg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~ 151 (262)
++|+|++||||++++++++|+++++.++++|+.++++|.++.+++.|++|+++|+|++|+|++|++++ +++.+|+++.
T Consensus 147 l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~--~~~~~k~~~~ 224 (316)
T 3hx3_A 147 LSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASL--RTSDLRKMVD 224 (316)
T ss_dssp CSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC--CHHHHHHHHH
T ss_pred cCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccC--ChHHHHHHHH
Confidence 99999999999999999999999999999999999999999887788999999999999999999999 9999999999
Q ss_pred HHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhh
Q psy2694 152 VQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSD 190 (262)
Q Consensus 152 ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (262)
++|++||+|+. +...+.||+|.++|+++|++++.=++++
T Consensus 225 ~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~K 264 (316)
T 3hx3_A 225 MLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER 264 (316)
T ss_dssp HHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTT
T ss_pred HHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhh
Confidence 99999999987 8899999999999999988765444433
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=2.5e-37 Score=274.49 Aligned_cols=177 Identities=25% Similarity=0.357 Sum_probs=162.3
Q ss_pred CCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCccccccCCCChHHHHHHHHcCCCeeccccCCCCCEEEEEeccc
Q psy2694 10 NPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANN 89 (262)
Q Consensus 10 p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~peif~~~dp~~~~l~~~l~~g~~~~Lpg~Dk~GrpViI~r~g~ 89 (262)
|...||.+|+||||||+||+++|.++|++|++||+++|+++.++++. ++.+.++.|++.+++|+|++||||+++++++
T Consensus 28 ~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~--~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~ 105 (262)
T 1r5l_A 28 PLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPR--SIIGLLKAGYHGVLRSRDPTGSKVLIYRIAH 105 (262)
T ss_dssp SSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGG--GTHHHHHTTCEEECSSCCTTCCEEEEEEGGG
T ss_pred CCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChH--HHHHHHHcCCccCCCCcCCCCCEEEEEeccc
Confidence 55689999999999999999999999999999999999888877763 4677889999889999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHHHHhhcCCcccc-cccccc
Q psy2694 90 WDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSF-IKSGFS 168 (262)
Q Consensus 90 ~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~ilQd~YPeR~~-~~~~~~ 168 (262)
+|++.++.++++|+.++++|.++.+++.|++|+++|+|++|+|++|+.++ +++.+|++++++|++||+|+. +...+.
T Consensus 106 ~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~--~~~~~k~~~~~~q~~yPerl~~i~ivN~ 183 (262)
T 1r5l_A 106 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQI--TPSVAKKIAAVLTDSFPLKVRGIHLINE 183 (262)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC--CHHHHHHHHHHHHTSSSSCEEEEEEESC
T ss_pred cCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhcc--CHHHHHHHHHHHHhhCChhhceEEEEeC
Confidence 99999999999999999999998887778899999999999999999999 999999999999999999988 899999
Q ss_pred hhhhhhhhhhHHHHHHHHHHhh
Q psy2694 169 SFIKSGISSFIKSGISSFIKSD 190 (262)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~ 190 (262)
||++.++|+++|++++.=.+++
T Consensus 184 P~~f~~~~~~vkpfl~~~t~~K 205 (262)
T 1r5l_A 184 PVIFHAVFSMIKPFLTEKIKER 205 (262)
T ss_dssp CGGGHHHHHHHGGGSCHHHHTT
T ss_pred CHHHHHHHHHHHHhcCHHHHhh
Confidence 9999999999998765544444
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.97 E-value=2.2e-32 Score=248.03 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=150.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHC--ccccccCCCChHHHHHHHHcCCCeeccccCCCCC
Q psy2694 3 KRSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH--AEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGR 80 (262)
Q Consensus 3 k~PhL~~p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~--peif~~~dp~~~~l~~~l~~g~~~~Lpg~Dk~Gr 80 (262)
++|+ +...||.+|+|||||||||+++|+++|++|++||+++ ++++.+.++... +.++..+..+++|+|++||
T Consensus 43 ~~~~---~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~g~Dk~Gr 116 (296)
T 1aua_A 43 DAGF---IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEK---PLIAKFYPQYYHKTDKDGR 116 (296)
T ss_dssp HTTC---CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTH---HHHGGGSCCEEEEECTTSC
T ss_pred hcCC---CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcH---HHHHHhCCceecccCCCCC
Confidence 4553 3458999999999999999999999999999999998 778877765332 2334445556789999999
Q ss_pred EEEEEeccccCCCC----CCHHHHHHHHHHHHHHHhcc--------CCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHH
Q psy2694 81 RILVFFANNWDHTR----YTLEIIYKSLILTLDNLLLD--------TQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRT 148 (262)
Q Consensus 81 pViI~r~g~~dp~~----~s~~~~iR~~~~~lE~~l~e--------~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk 148 (262)
||++.+++++|+++ .+.++++|+.++.+|.+++. .+.+++|+++|+|++|++++|+.++ +..+|+
T Consensus 117 pV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~---~~~~k~ 193 (296)
T 1aua_A 117 PVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSV---MSYVRE 193 (296)
T ss_dssp EEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHH---HHHHHH
T ss_pred EEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHH---HHHHHH
Confidence 99999999998764 58999999999999987653 2345899999999999999987654 788999
Q ss_pred HHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhhH
Q psy2694 149 MLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSDL 191 (262)
Q Consensus 149 ~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (262)
+++++|++||+|+. +...+.||+|.++|+++|++++.=+++++
T Consensus 194 ~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI 237 (296)
T 1aua_A 194 ASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKI 237 (296)
T ss_dssp HHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTE
T ss_pred HHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceE
Confidence 99999999999988 99999999999999999987665544443
No 4
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.97 E-value=6.9e-32 Score=254.89 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=149.1
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHC--ccccccCCCChHHHHHHHHcCCCeeccccCCCCCEE
Q psy2694 5 SDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH--AEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRI 82 (262)
Q Consensus 5 PhL~~p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~--peif~~~dp~~~~l~~~l~~g~~~~Lpg~Dk~GrpV 82 (262)
||+ | ..||.+|+||||||+||+++|+++|++|++||+++ ++++....+ +.+++.+. ..++|+|++||||
T Consensus 28 ~~l--~-~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~--~~~~~~~~----~~~~g~Dk~GrpV 98 (403)
T 1olm_A 28 PAL--P-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPP--EVIQQYLS----GGMCGYDLDGCPV 98 (403)
T ss_dssp GGS--S-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCC--HHHHHHCC----BEEEEECTTSCEE
T ss_pred cCC--C-CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCH--HHHHHhCC----ceeeccCCCcCEE
Confidence 566 3 58999999999999999999999999999999998 456552222 34444433 2357999999999
Q ss_pred EEEeccccCCC----CCCHHHHHHHHHHHHHHHhccCCC-------CcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHH
Q psy2694 83 LVFFANNWDHT----RYTLEIIYKSLILTLDNLLLDTQN-------QMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLE 151 (262)
Q Consensus 83 iI~r~g~~dp~----~~s~~~~iR~~~~~lE~~l~e~~~-------qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~ 151 (262)
++++++++|++ ..+.++++|+.++++|.++.+... +++|+++|+|++|++++|+++. .+..+|++++
T Consensus 99 ~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~--~~~~~k~~~~ 176 (403)
T 1olm_A 99 WYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKP--AVEAYGEFLC 176 (403)
T ss_dssp EEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHH--HHHHHHHHHH
T ss_pred EEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhH--HHHHHHHHHH
Confidence 99999999987 579999999999999998775432 4799999999999999998877 7889999999
Q ss_pred HHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhhH
Q psy2694 152 VQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSDL 191 (262)
Q Consensus 152 ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (262)
++|++||+|+. +...+.||+|.++|+++|++++.=.++++
T Consensus 177 ~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI 217 (403)
T 1olm_A 177 MFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKI 217 (403)
T ss_dssp HHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTE
T ss_pred HHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceE
Confidence 99999999988 99999999999999999997766555554
No 5
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.97 E-value=1.2e-31 Score=247.73 Aligned_cols=183 Identities=13% Similarity=0.173 Sum_probs=149.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCc--cccccCCCCh----HHHHHHHHcCCCeecccc
Q psy2694 2 SKRSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHA--EFFDNLTVSN----RQIQCAIKDGLPGVLSNR 75 (262)
Q Consensus 2 ~k~PhL~~p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~p--eif~~~dp~~----~~l~~~l~~g~~~~Lpg~ 75 (262)
+++|+. ...||.+|+|||||||||+++|.++|++|++||++++ +++.+.++.. ++ .+.+...+..+++|+
T Consensus 51 ~~~~~~---~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e-~~~~~~~~~~~~~g~ 126 (320)
T 3q8g_A 51 LEKNYK---ERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKE-RIKLAKMYPQYYHHV 126 (320)
T ss_dssp HHTTCC---SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHH-HHHHHTTSCEEEEEE
T ss_pred HhcCCC---CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhH-HHHHHHhCCceecCC
Confidence 356643 4589999999999999999999999999999999997 5665544431 12 223444556678899
Q ss_pred CCCCCEEEEEeccccCCCC----CCHHHHHHHHHHHHHHHhcc--------CCCCcCcEEEEEeCCCCCcccccCCcCCH
Q psy2694 76 DRKGRRILVFFANNWDHTR----YTLEIIYKSLILTLDNLLLD--------TQNQMNGLIFIVDWGNLTLRQTSNNINSF 143 (262)
Q Consensus 76 Dk~GrpViI~r~g~~dp~~----~s~~~~iR~~~~~lE~~l~e--------~~~qi~GivvIiDl~G~Slshl~~l~~~~ 143 (262)
|++||||+++++|++|+++ .+.++++|+.++.+|.+++. .+..++++++|+|++|++++|+.++ +
T Consensus 127 Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~---~ 203 (320)
T 3q8g_A 127 DKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHV---L 203 (320)
T ss_dssp CTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHT---H
T ss_pred CCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHH---H
Confidence 9999999999999999875 37889999999999987642 1234678999999999999988755 7
Q ss_pred HHHHHHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhhH
Q psy2694 144 KQVRTMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSDL 191 (262)
Q Consensus 144 ~~lKk~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (262)
..+|+++.++|++||+|+. +...+.||++..+|+++|++++.=+++++
T Consensus 204 ~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI 252 (320)
T 3q8g_A 204 SYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKI 252 (320)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTE
T ss_pred HHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhE
Confidence 8899999999999999988 99999999999999999987766555554
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=97.02 E-value=0.00079 Score=59.91 Aligned_cols=96 Identities=10% Similarity=0.104 Sum_probs=66.6
Q ss_pred CeeccccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHH
Q psy2694 69 PGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRT 148 (262)
Q Consensus 69 ~~~Lpg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk 148 (262)
+++-.|.|++||||+++.+.+.+++..+.+.++.+++.++|... .....+|+|+++++..+ .. ..+.+++
T Consensus 12 ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n--~p--~~~wl~~ 81 (256)
T 3pg7_A 12 IFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSN--RF--KTDFLSK 81 (256)
T ss_dssp SEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGG--CC--CHHHHHH
T ss_pred CEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCccc--CC--cHHHHHH
Confidence 34555899999999999999999888887777766666665433 25789999999999853 34 5666776
Q ss_pred HHHHHhhcCCcccc-cc-cccchhhhhh
Q psy2694 149 MLEVQVNISNFSSF-IK-SGFSSFIKSG 174 (262)
Q Consensus 149 ~l~ilQd~YPeR~~-~~-~~~~~~~~~~ 174 (262)
+.+++..-|....- +- .|-..|++..
T Consensus 82 ~~~llp~~~~kNlk~~Yivnpt~~~k~~ 109 (256)
T 3pg7_A 82 WFVVFPGFAYDNVSAVYIYNCNSWVREY 109 (256)
T ss_dssp TTTSSCHHHHHTEEEEEEESCCHHHHHH
T ss_pred HHHHcCHHHHhcccEEEEECCCHHHHHH
Confidence 66555555555543 32 3333566644
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=97.00 E-value=0.00034 Score=63.54 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=71.5
Q ss_pred cCCCeeccccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHH
Q psy2694 66 DGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQ 145 (262)
Q Consensus 66 ~g~~~~Lpg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~ 145 (262)
.+.+++-.|.|++|+||+++.+++++.+..+.+.++-+++.++|... .....+|+|+++++..+ .. +.+.
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~------~~~y~lV~D~T~~~~~n--~p--~~~~ 97 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSN--RF--KTDF 97 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGG--CC--CHHH
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhc------CCCeEEEEEcCCCCccC--CC--hHHH
Confidence 45566777899999999999999999888888777666666655432 25799999999999852 44 6778
Q ss_pred HHHHHHHHhhcCCcccc-cccccc-hhhhh
Q psy2694 146 VRTMLEVQVNISNFSSF-IKSGFS-SFIKS 173 (262)
Q Consensus 146 lKk~l~ilQd~YPeR~~-~~~~~~-~~~~~ 173 (262)
++++.+++...|+.+.. +-+-|. .|.+.
T Consensus 98 l~~~~~llp~~~~kNl~~~Yi~np~~~f~~ 127 (290)
T 3peg_A 98 LSKWFVVFPGFAYDNVSAVYIYNCNSWVRE 127 (290)
T ss_dssp HGGGGTSSCHHHHHTEEEEEEESCCHHHHH
T ss_pred HHHHHHHCCHHHHhhccEEEEECCCHHHHH
Confidence 88877777777777754 333333 45444
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=79.65 E-value=2.3 Score=29.29 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 11 PYNTDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 11 ~~~DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
|..|+..+..-|++++.|++.|.+.|.+
T Consensus 21 P~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 21 PNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4589999999999999999999998864
No 9
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.12 E-value=6.1 Score=27.87 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy2694 11 PYNTDEFLTRFLYARKMNVDKSFDLLCNY 39 (262)
Q Consensus 11 ~~~DD~~LLRFLRArKfdvekAkk~L~~y 39 (262)
|..|...+..-|++++.|++.|.+.|.+.
T Consensus 30 P~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 30 PNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45899999999999999999999987653
No 10
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=62.88 E-value=8.6 Score=23.35 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=18.2
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLL 36 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L 36 (262)
+.....+-|+++++|+++|.+.|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 45667888999999999988754
No 11
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=59.05 E-value=10 Score=25.08 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 11 PYNTDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 11 ~~~DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
|..+...+..-|++++.|+++|.++|.+
T Consensus 16 P~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 16 PAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp SSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4478889999999999999999998865
No 12
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=58.15 E-value=11 Score=24.92 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=19.8
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
|+.-.++-|+++++|+++|.+.|.+
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6677788888888888888887653
No 13
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=55.86 E-value=14 Score=26.00 Aligned_cols=26 Identities=12% Similarity=-0.064 Sum_probs=22.0
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
.|+.-.++-|++++.|+++|.+.|.+
T Consensus 32 ~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 32 VNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35667799999999999999998764
No 14
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=55.15 E-value=13 Score=25.28 Aligned_cols=26 Identities=19% Similarity=-0.012 Sum_probs=22.0
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
.|+.-.++=|+++++|+++|.+.|.+
T Consensus 30 ~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 30 FDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35667799999999999999998754
No 15
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=54.76 E-value=12 Score=24.06 Aligned_cols=25 Identities=16% Similarity=-0.063 Sum_probs=21.1
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLC 37 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~ 37 (262)
.|+.-.++=|+++++|+++|.+.|-
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3566779999999999999998764
No 16
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.75 E-value=13 Score=24.12 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=19.0
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
+.....+=||++++|+++|.+.|.+
T Consensus 21 ~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 21 ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5666778888888888888876643
No 17
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.15 E-value=18 Score=24.13 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=20.7
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
|+.-.++-|+++++|+++|.+.|.+
T Consensus 23 d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 23 NREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4555689999999999999988764
No 18
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=48.68 E-value=17 Score=23.92 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=15.7
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLL 36 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L 36 (262)
|+.-.++=|+++++|+++|.+.|
T Consensus 26 ~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 26 NREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Confidence 55556677777777777777655
No 19
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.51 E-value=20 Score=25.50 Aligned_cols=28 Identities=11% Similarity=0.161 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 11 PYNTDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 11 ~~~DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
|+..+.|+.+.|.+.+.|+|++...|-.
T Consensus 25 PdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 25 PDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 5679999999999999999999876644
No 20
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.36 E-value=19 Score=25.71 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=20.4
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLLC 37 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L~ 37 (262)
|+.-.++=|++.++|+++|.+.|.
T Consensus 43 dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 43 NRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHH
Confidence 567778999999999999988764
No 21
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=45.56 E-value=18 Score=22.66 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=19.8
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDL 35 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~ 35 (262)
.++.....||.+++||++.|...
T Consensus 18 ~~~~~A~~~L~~~~wdle~Ai~~ 40 (46)
T 1v92_A 18 AEEDRARFFLESAGWDLQIALAS 40 (46)
T ss_dssp CCHHHHHHHHHHTTSCSHHHHHH
T ss_pred cCHHHHHHHHHHcCCCHHHHHHH
Confidence 46788899999999999999764
No 22
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=44.76 E-value=21 Score=22.21 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=18.3
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLLC 37 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L~ 37 (262)
++....+=|+++++|+++|.+.|.
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 17 TEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHH
Confidence 456677788888888888887653
No 23
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.63 E-value=29 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=18.4
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
++...++=|+++++|+++|.+.|..
T Consensus 22 ~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 22 SKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4555677788888888888876654
No 24
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=43.36 E-value=17 Score=24.38 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=21.8
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLC 37 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~ 37 (262)
.+..||.+.|.+.++|+.+|.+.|.
T Consensus 24 negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 24 DEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred ccccHHHHHHHHccCCHHHHHHHhh
Confidence 3557999999999999999999874
No 25
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.46 E-value=28 Score=23.66 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=19.4
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDL 35 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~ 35 (262)
.++.....||.+++||++.|...
T Consensus 28 ~~~~~A~~~Le~~~WnLe~Av~~ 50 (62)
T 2dal_A 28 ASESVGKHMLEACNNNLEMAVTM 50 (62)
T ss_dssp CCHHHHHHHHHTTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 45778889999999999999764
No 26
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=40.76 E-value=24 Score=25.09 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=11.4
Q ss_pred HHHHHHHHhhcCCCHHHHHHHH
Q psy2694 15 DEFLTRFLYARKMNVDKSFDLL 36 (262)
Q Consensus 15 D~~LLRFLRArKfdvekAkk~L 36 (262)
+...++=||++++|+++|.+.|
T Consensus 43 r~~a~~AL~~~~~nve~Ave~L 64 (73)
T 1vg5_A 43 RTQVEVALAAADDDLTVAVEIL 64 (73)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 3444445555555555555444
No 27
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=40.71 E-value=25 Score=26.93 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.2
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
.|+...++=|+++++|+++|.+.|.+
T Consensus 79 ~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 79 QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 36678899999999999999998754
No 28
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.77 E-value=49 Score=24.12 Aligned_cols=24 Identities=17% Similarity=-0.017 Sum_probs=14.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 15 DEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 15 D~~LLRFLRArKfdvekAkk~L~~ 38 (262)
+....+=||++++|+++|.+.|.+
T Consensus 43 ~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 43 TVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 455566666666666666665543
No 29
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=34.73 E-value=17 Score=21.40 Aligned_cols=11 Identities=64% Similarity=0.918 Sum_probs=6.4
Q ss_pred HhhHHHHHhhh
Q psy2694 188 KSDLSSFMKSG 198 (262)
Q Consensus 188 ~~~~~~~~~~~ 198 (262)
-.|+-+|||||
T Consensus 10 ltdilsfmksg 20 (33)
T 3c0t_B 10 LTDILSFMKSG 20 (33)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcc
Confidence 34555666665
No 30
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.07 E-value=43 Score=23.15 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=19.6
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDL 35 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~ 35 (262)
.++..-..||.+.+||+|.|...
T Consensus 30 ~~~~~A~~~Le~~~WdLe~Al~~ 52 (66)
T 2dzl_A 30 CAADQAKQLLQAAHWQFETALST 52 (66)
T ss_dssp CCHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 46778889999999999999764
No 31
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.24 E-value=37 Score=23.48 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=18.4
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDL 35 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~ 35 (262)
.|......||..++||++.|...
T Consensus 32 ~d~~~A~~~Le~~~WnLe~Av~~ 54 (67)
T 2dam_A 32 ESMDQCRHTLEQHNWNIEAAVQD 54 (67)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 46677888999999999988664
No 32
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.30 E-value=40 Score=23.40 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.0
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLLC 37 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L~ 37 (262)
++...++=|++++.|+|+|.+-|-
T Consensus 32 s~~qA~kALKat~~NvErAaDWLF 55 (63)
T 1wgn_A 32 SYECVLRAMKKKGENIEQILDYLF 55 (63)
T ss_dssp CHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567788899999999999988663
No 33
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=31.19 E-value=54 Score=23.04 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=8.8
Q ss_pred HHHHHhhcCCCHHHHHHHH
Q psy2694 18 LTRFLYARKMNVDKSFDLL 36 (262)
Q Consensus 18 LLRFLRArKfdvekAkk~L 36 (262)
..+=||++++|+++|.+.|
T Consensus 46 a~~AL~~t~~nve~Ave~L 64 (73)
T 1wiv_A 46 ARKALKASGGDIEKATDWV 64 (73)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3344455555555554433
No 34
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.49 E-value=54 Score=22.13 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=17.8
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 14 DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
+.....+=||++++|+++|.+.|..
T Consensus 22 ~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 22 SRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4456667788888888888776654
No 35
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=26.29 E-value=44 Score=21.50 Aligned_cols=21 Identities=5% Similarity=0.115 Sum_probs=17.4
Q ss_pred CH-HHHHHHHhhcCCCHHHHHH
Q psy2694 14 TD-EFLTRFLYARKMNVDKSFD 34 (262)
Q Consensus 14 DD-~~LLRFLRArKfdvekAkk 34 (262)
+| .....||-+++||++.|..
T Consensus 19 ~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 19 ENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHT
T ss_pred CCHHHHHHHHHHcCCcHHHHHH
Confidence 44 7788999999999998864
No 36
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.26 E-value=92 Score=20.87 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=20.4
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLCN 38 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~~ 38 (262)
.|+..=.+-|+..++|+++|.+.|.+
T Consensus 22 ~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 22 CDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 36677788899999999999776654
No 37
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=25.88 E-value=78 Score=26.06 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=19.0
Q ss_pred CChHHHHHHHHcCCCeeccccCCCCCEEEEE
Q psy2694 55 VSNRQIQCAIKDGLPGVLSNRDRKGRRILVF 85 (262)
Q Consensus 55 p~~~~l~~~l~~g~~~~Lpg~Dk~GrpViI~ 85 (262)
.+.++.+.+++.-...-.|...++|||+++-
T Consensus 153 Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~ 183 (197)
T 3kdg_A 153 LRNDEIKALLDDLRSTSDPFTCPHGRPIIIH 183 (197)
T ss_dssp CCHHHHHHHHHHHHHSSCTTBCTTSCBCEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCcCCCCCcEEEE
Confidence 3445655555432233456788999998764
No 38
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=25.00 E-value=83 Score=22.98 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.1
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLCNY 39 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~~y 39 (262)
..|..|.+-.-+.+||++||.+.+-+-
T Consensus 49 V~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 49 VPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp SCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 568889999999999999999987653
No 39
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.74 E-value=1e+02 Score=20.60 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=22.3
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLCNYI 40 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~~yl 40 (262)
.|.+-.++=|...+.|+|-|...|..+.
T Consensus 21 F~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 21 YSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3567788888999999999988887653
No 40
>3seo_A VOPL C terminal domain protein; alpha helix, structural protein; 2.31A {Vibrio parahaemolyticus} PDB: 3ryl_A
Probab=24.08 E-value=25 Score=30.30 Aligned_cols=29 Identities=31% Similarity=0.697 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhhHhhccccccc
Q psy2694 180 KSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIK 212 (262)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (262)
+--|.-||+ +-|++||++|--+|.++|++
T Consensus 199 qqdI~~Fm~----~nl~~GFs~ytf~Gl~~rva 227 (241)
T 3seo_A 199 KQDITKFMK----DNLQAGFSGYSYQGLTNRVA 227 (241)
T ss_dssp HHHHHHHHH----HHHHHTTGGGSHHHHHHHHH
T ss_pred HHHHHHHHH----HHHhccccccccccHHHHHH
Confidence 445677765 45788999999888888876
No 41
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=22.91 E-value=1.2e+02 Score=20.22 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=21.4
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLCNY 39 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~~y 39 (262)
.|..-.++=|+..+.|++-|...|..+
T Consensus 23 Fsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 23 YAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 356677888888888998888887765
No 42
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.55 E-value=94 Score=21.13 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=13.7
Q ss_pred CHHHHHHHHhhcCC-CHHHHHHHH
Q psy2694 14 TDEFLTRFLYARKM-NVDKSFDLL 36 (262)
Q Consensus 14 DD~~LLRFLRArKf-dvekAkk~L 36 (262)
+.....+=|++++. |+|+|.+.|
T Consensus 32 ~~~~a~~AL~~t~~~nve~A~ewL 55 (64)
T 2cpw_A 32 PRARAQKALASTGGRSVQTACDWL 55 (64)
T ss_dssp CHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34555666666666 666666544
No 43
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.36 E-value=1.5e+02 Score=19.81 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=22.8
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLLCNYI 40 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L~~yl 40 (262)
..-+|-.++|..++||.++|...+..-.
T Consensus 20 mn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 20 MNLEWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4567889999999999999998765543
No 44
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=21.14 E-value=52 Score=17.73 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=10.9
Q ss_pred CCHHHHHHHHhhcC
Q psy2694 13 NTDEFLTRFLYARK 26 (262)
Q Consensus 13 ~DD~~LLRFLRArK 26 (262)
..|..|+|||...+
T Consensus 3 ~kdhqllrylldkd 16 (21)
T 3dct_B 3 SKDHQLLRYLLDKD 16 (26)
T ss_pred hhHHHHHHHHHccc
Confidence 46889999997653
No 45
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=20.41 E-value=82 Score=20.07 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=20.5
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHH
Q psy2694 13 NTDEFLTRFLYARKMNVDKSFDLL 36 (262)
Q Consensus 13 ~DD~~LLRFLRArKfdvekAkk~L 36 (262)
.++...++=|.+|+.|++.|...|
T Consensus 16 F~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 16 FPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp CCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 567888899999999999998765
Done!