RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2694
(262 letters)
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain.
Length = 48
Score = 47.2 bits (113), Expect = 1e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 10 NPYNTDEFLTRFLYARKMNVDKSFDLLCNY 39
P D FL RFL ARK +V+K+ ++L Y
Sbjct: 19 PPRLDDAFLLRFLRARKFDVEKAKEMLEKY 48
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 45.1 bits (107), Expect = 4e-06
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 70 GVLSNRDRKGRRILVFFANNWDHTRYT-LEIIYKSLILTLDNLLLDTQNQMNGLIFIVDW 128
G L RD++GR +L+ A N D ++ E + + L+ TL+ LL + Q+ G + I+D
Sbjct: 11 GYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDL 70
Query: 129 GNLTLRQTSNNINSFKQVRTMLE------VQ----VNISNFSSFIKSGFSSFIKSGISSF 178
L+L + + K++ +L+ ++ +N F + F+
Sbjct: 71 KGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKK 130
Query: 179 IKSGISSFIKSDLSSFMK 196
I F+ SD +K
Sbjct: 131 IV-----FLGSDKEELLK 143
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 44.9 bits (107), Expect = 5e-06
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 67 GLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDN-LLLDTQNQMNGLIFI 125
G G L RD++GR +L D + +LE + + L+L L+ LLL + Q+ G+ I
Sbjct: 1 GGKGYLHGRDKEGRPVLYLRPGRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVI 60
Query: 126 VDWGNLTLRQTSNNINSFKQVRTMLEV 152
+D L+L ++ +L++
Sbjct: 61 IDMKGLSLSNMDK--WPISFLKKILKI 85
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain. This
all-alpha domain is found to the N-terminus of
pfam00650.
Length = 48
Score = 42.6 bits (101), Expect = 5e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 10 NPYNTDEFLTRFLYARKMNVDKSFDLLCNY 39
D FL RFL ARK +V+K+ +L
Sbjct: 19 KDKLDDAFLLRFLRARKFDVEKAIKMLKKT 48
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 38.6 bits (89), Expect = 0.003
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 173 SGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSSLS 232
SG+ S I I S + + ++SG ++ G ++SG ++ G I+
Sbjct: 566 SGVRSGIHCSIQSSARGGVHDSVRSGVHDSVRGGVHDSMRSGVHDSLRGGVHDSIRGGAH 625
Query: 233 FCIKSGIPSFIKSGS 247
++SG ++ S
Sbjct: 626 DGVRSGAHDGVRKSS 640
Score = 36.3 bits (83), Expect = 0.016
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 155 NISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSG 214
N S S I S + G+ ++SG+ ++ + M+SG ++ G I+ G
Sbjct: 564 NHSGVRSGIHCSIQSSARGGVHDSVRSGVHDSVRGGVHDSMRSGVHDSLRGGVHDSIRGG 623
Query: 215 FSSRIKSGFSSCIKSS 230
++SG ++ S
Sbjct: 624 AHDGVRSGAHDGVRKS 639
Score = 35.9 bits (82), Expect = 0.022
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 165 SGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFS 224
SG S I I S + G+ ++S + ++ G ++SG ++ G I+ G
Sbjct: 566 SGVRSGIHCSIQSSARGGVHDSVRSGVHDSVRGGVHDSMRSGVHDSLRGGVHDSIRGGAH 625
Query: 225 SCIKSSL 231
++S
Sbjct: 626 DGVRSGA 632
Score = 27.8 bits (61), Expect = 7.3
Identities = 8/63 (12%), Positives = 30/63 (47%)
Query: 163 IKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSG 222
++SG ++ G+ ++SG+ ++ + ++ G ++SG ++ +++
Sbjct: 588 VRSGVHDSVRGGVHDSMRSGVHDSLRGGVHDSIRGGAHDGVRSGAHDGVRKSSGVKVEGM 647
Query: 223 FSS 225
++
Sbjct: 648 GNA 650
>gnl|CDD|151746 pfam11305, DUF3107, Protein of unknown function (DUF3107). Some
members in this family of proteins are annotated as
ATP-binding proteins however this cannot be confirmed.
Currently no function is known.
Length = 74
Score = 30.7 bits (70), Expect = 0.12
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 57 NRQIQCAIKDGLPGVLSNRDRKGRRILV 84
+ A+ DG GVLS D KGRR+LV
Sbjct: 26 EALVAEALADG-SGVLSLTDDKGRRVLV 52
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 31.8 bits (72), Expect = 0.24
Identities = 16/108 (14%), Positives = 26/108 (24%), Gaps = 22/108 (20%)
Query: 29 VDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFAN 88
V L + R +L R+L
Sbjct: 108 VPPEALPLARRLRRRLKLLRQLAAALRRLV---------AAELLDRLAELWERLLAALLA 158
Query: 89 NWDHTRYTLEIIYKSLI---LTLDNLLLDTQNQMNGLIFIVDWGNLTL 133
L + L NLL+D ++ G+I D+ + L
Sbjct: 159 LLPALPLVL-------VHGDLHPGNLLVDPGGRVTGVI---DFEDAGL 196
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 31.5 bits (72), Expect = 0.25
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 64 IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLL--DTQNQMNG 121
+K +PG D+ GR +L+ A +D TLE + + L+ L+ +L + G
Sbjct: 5 LKAYIPGGR-GYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIEG 63
Query: 122 LIFIVD 127
I D
Sbjct: 64 FTVIFD 69
>gnl|CDD|107029 PHA01351, PHA01351, putative minor structural protein.
Length = 1070
Score = 32.2 bits (73), Expect = 0.29
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 155 NISNFSSFIKSGFSSFIKSGISSFIKSGISSFIK---SDLSSFMKSGFSSFIK--SGFSS 209
N+ NF+++I S F +FI + ++ I+SF+ SD+ +FM++ ++F+ F
Sbjct: 32 NLENFTNWISSDFINFINAIVNDI--KNIASFLGQAISDIPTFMQNIATNFLTILQNFVQ 89
Query: 210 RIKSGFSSRIKSGFSSCIKSSLSFCIKSGIPSFIKSGSSPFITYFNGIFPVI 261
S S F I + F + S FI S S F N +I
Sbjct: 90 TAISTIQG-FVSWFEQQIVGAFEF-LSSIASDFINSAYSFFQNVANDFAQII 139
>gnl|CDD|173881 cd08516, PBP2_NikA_DppA_OppA_like_11, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 457
Score = 30.3 bits (69), Expect = 1.0
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 6 DIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQ-IQCAI 64
D+D Y + + + + S Y+ E FD+ V RQ I AI
Sbjct: 205 DVDIIEYVPPQQAAQLEEDDGLKLASSPGNSYMYLALNNT-REPFDDPKV--RQAIAYAI 261
Query: 65 K 65
Sbjct: 262 D 262
>gnl|CDD|227500 COG5173, SEC6, Exocyst complex subunit SEC6 [Intracellular
trafficking and secretion].
Length = 742
Score = 30.3 bits (68), Expect = 1.2
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 22/102 (21%)
Query: 102 KSLILTLDNLLLDTQNQMNGLIFIVDWGNLT-------LRQTSNNINSFKQVRTMLEVQV 154
K ++ TL + L D QN M+ +F+ L+ L+Q +
Sbjct: 574 KVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQLGRK-RASI---------- 622
Query: 155 NISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMK 196
N S +KS + + F G +K+ LS +K
Sbjct: 623 AEENASRTLKSDHTKLYE----MFSGYGDPEDVKTTLSPILK 660
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 29.3 bits (66), Expect = 1.9
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 6/31 (19%)
Query: 99 IIYKSLILTLDNLLLDTQNQMNGLIFIVDWG 129
I+Y+ L LDNLLLDT+ G + I D+G
Sbjct: 122 IVYRDL--KLDNLLLDTE----GFVKIADFG 146
>gnl|CDD|220385 pfam09759, Atx10homo_assoc, Spinocerebellar ataxia type 10
protein domain. This is the conserved C-terminal 100
residues of Ataxin-10. Ataxin-10 belongs to the family
of armadillo repeat proteins and in solution it tends
to form homotrimeric complexes, which associate via a
tip-to-tip association in a horseshoe-shaped contact
with the concave sides of the molecules facing each
other. This domain may represent the homo-association
site since that is located near the C-terminus of
Ataxin-10. The protein does not contain a signal
sequence for secretion or any subcellular compartment
confirming its cytoplasmic localisation, specifically
to the olivocerebellar region.
Length = 102
Score = 28.0 bits (63), Expect = 2.2
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 42 YRTNHAEFFDNLTVSNRQIQCAIK--DGLPGVLSN 74
++ NLT N+++Q ++ GL +LSN
Sbjct: 2 FKRELVRLIANLTYKNKEVQDKVRELGGLALILSN 36
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 28.1 bits (64), Expect = 4.2
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 106 LTLDNLL------LDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTML 150
L L N L ++ Q++ I D LT+ Q + + R +
Sbjct: 14 LHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELR--ENTRELA 62
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 28.1 bits (63), Expect = 4.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 6/31 (19%)
Query: 99 IIYKSLILTLDNLLLDTQNQMNGLIFIVDWG 129
IIY+ L LDN+LLD++ G I I D+G
Sbjct: 117 IIYRDL--KLDNVLLDSE----GHIKIADFG 141
>gnl|CDD|176977 CHL00036, ycf4, photosystem I assembly protein Ycf4.
Length = 184
Score = 27.5 bits (62), Expect = 5.0
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 156 ISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSG 206
ISNF ++ + G F+ GISS++ +L F+ S F G
Sbjct: 19 ISNF------FWAFILFLGSLGFLLVGISSYLGKNLIPFLPSQQILFFPQG 63
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 28.2 bits (62), Expect = 5.9
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 18/91 (19%)
Query: 157 SNFSSFIKSGFSSFIKSGISSFIK---------SGISSFI------KSDLSSFMKSGFSS 201
+NF+S SF S + +IK SGI +F+ +S L++F+ S F++
Sbjct: 564 NNFASMSDKCTRSFANSWLWMYIKWVFYRMGMTSGIPNFLACQTKAESSLTAFLAS-FNA 622
Query: 202 FIKSGFSSRIKSGFSSRIKSGFSSCIKSSLS 232
I + ++ S +S ++S ++CI+SSL+
Sbjct: 623 TINATIAA--ASANNSEVQSSEAACIESSLA 651
>gnl|CDD|132471 TIGR03430, trp_dimet_allyl, tryptophan dimethylallyltransferase.
Members of this family are the enzyme tryptophan
dimethylallyltransferase (EC 2.5.1.34), a distinct clade
within a larger group of aromatic prenyltransferases
that may act on on trp-containing cyclic dipeptides, or
on tyrosine or other related substrates. Tryptophan
dimethylallyltransferase and related enzymes typically
are of fungal origin are involved in the biosynthesis of
secondary metabolites such as ergot alkaloids.
Length = 419
Score = 27.9 bits (62), Expect = 6.4
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 20 RFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKD 66
R L + ++ F++L +Y+ R + AE + +S R + C + D
Sbjct: 201 RKLSQKHPSIQPPFNMLEDYVRSRNDPAEASKHTPLSPRLLSCDLVD 247
>gnl|CDD|224398 COG1481, COG1481, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 27.3 bits (61), Expect = 7.5
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 167 FSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKS 213
FSS +K ++ S S K++LS+F+++ I G I +
Sbjct: 3 FSSEVKEELTRNPVS--DSEWKAELSAFIRNNGKLLIVGGLVLFITT 47
>gnl|CDD|216456 pfam01365, RYDR_ITPR, RIH domain. The RIH (RyR and IP3R Homology)
domain is an extracellular domain from two types of
calcium channels. This region is found in the ryanodine
receptor and the inositol-1,4,5- trisphosphate receptor.
This domain may form a binding site for IP3.
Length = 203
Score = 26.9 bits (60), Expect = 9.9
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 35 LLCNYI-TYRTNHAEFFDNLTVSNRQI 60
L + R N A +L + Q
Sbjct: 86 FLQYFCRGNRQNQALLAKHLDLMQLQS 112
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.398
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,031,839
Number of extensions: 1216769
Number of successful extensions: 1159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1136
Number of HSP's successfully gapped: 50
Length of query: 262
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 167
Effective length of database: 6,723,972
Effective search space: 1122903324
Effective search space used: 1122903324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)