RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2694
(262 letters)
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 129 bits (326), Expect = 5e-36
Identities = 50/197 (25%), Positives = 99/197 (50%), Gaps = 12/197 (6%)
Query: 8 DFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDG 67
+ F RF+ ARK NV ++++LL Y+ +R + E FD+L+ ++C I+ G
Sbjct: 85 ERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPE--AVRCTIEAG 142
Query: 68 LPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVD 127
PGVLS+RD+ GR +++F NW T + I ++ L+ LL + + Q+NG I +
Sbjct: 143 YPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIEN 202
Query: 128 WGNLTLRQTSN-NINSFKQVRTMLE-------VQVNISNFSSFIKSGFSSFIKSGISSFI 179
+ T++Q ++ + +++ ML+ ++ + + + + + +K + S +
Sbjct: 203 FKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTY-NVVKPFLKSKL 261
Query: 180 KSGISSFIKSDLSSFMK 196
+ DLS F +
Sbjct: 262 LERV-FVHGDDLSGFYQ 277
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 127 bits (320), Expect = 1e-35
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 11/191 (5%)
Query: 14 TDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLS 73
TD FL RFL AR ++D ++ LL NY +R E +L I +K G GVL
Sbjct: 32 TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPR--SIIGLLKAGYHGVLR 89
Query: 74 NRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTL 133
+RD G ++L++ +WD +T +++ ++T + ++ + + Q NG+ I D
Sbjct: 90 SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQF 149
Query: 134 RQ-TSNNINSFKQVRTMLE-------VQVNISNFSSFIKSGFSSFIKSGISSFIKSGISS 185
+ K++ +L +++ N + F S IK ++ IK I
Sbjct: 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVF-SMIKPFLTEKIKERIHM 208
Query: 186 FIKSDLSSFMK 196
+ S ++
Sbjct: 209 HGNNYKQSLLQ 219
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 73.5 bits (180), Expect = 3e-15
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 16/156 (10%)
Query: 8 DFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDG 67
P D FL R+L AR ++ KS +L ++ +R DN+ +S + + I+
Sbjct: 28 PALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD--IDNI-ISWQPPE-VIQQY 83
Query: 68 LPGVLSNRDRKGRRILVFFANNWD----HTRYTLEIIYKSLILTLDNLLLDTQNQM---- 119
L G + D G + D + + + ++ + + LL + +Q
Sbjct: 84 LSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLG 143
Query: 120 ---NGLIFIVDWGNLTLRQTSNN-INSFKQVRTMLE 151
+ I D L L+ + ++ + M E
Sbjct: 144 RKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFE 179
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 64.9 bits (158), Expect = 2e-12
Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 17/163 (10%)
Query: 6 DIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH-----AEFFDNLTVSNRQI 60
+ ++ D L RFL ARK +++ S ++ +R + E ++N + +
Sbjct: 52 EKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKE 111
Query: 61 QCAIKDGLPGVLSNRDRKGRRILVFFANNWD----HTRYTLEIIYKSLILTLDNLL---L 113
+ + P + D+ GR + + + T + + ++L+ + +
Sbjct: 112 RIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRV 171
Query: 114 DTQNQMNG-----LIFIVDWGNLTLRQTSNNINSFKQVRTMLE 151
++ G ++D ++L + ++ K V + +
Sbjct: 172 PACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQ 214
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 62.1 bits (151), Expect = 2e-11
Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 17/161 (10%)
Query: 5 SDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITY-RTNHA-EFFDNLTVSNRQIQC 62
D F D L RFL ARK +V + ++ N + + + +
Sbjct: 42 EDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKP--- 98
Query: 63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRY----TLEIIYKSLILTLDNLLL----- 113
I P D+ GR + + + E + K+L+ ++++
Sbjct: 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPA 158
Query: 114 ---DTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLE 151
+ + I+D +++ + ++ ++ + +
Sbjct: 159 CSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQ 199
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.18
Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 74/264 (28%)
Query: 16 EFLTRFLYARKMNVDK-------SFDLLCNYITYRTNHAEFFDNLTV--SNRQIQCAIKD 66
+ L + + +N DK S ++L YR + FD L+V + I
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYR----KMFDRLSVFPPSAHIP----- 388
Query: 67 GLPGVLS-----NRDRKGRRILVFFAN------NWDHTRYTLEIIYKSLILTLDNL---- 111
+LS ++ + ++ IY L + L+N
Sbjct: 389 --TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 112 --LLDTQNQMNGLIFIVDWGNLTLRQTSNNINSF-----KQVRTMLEVQVNISNFSSFIK 164
++D N D +L S K + + + F
Sbjct: 447 RSIVDHYNIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIE-------HPERMTLFRM 495
Query: 165 SGFS-SFIKSGISSFIKSGI----SSFIKSDLSSFMKSGFSSFI---KSGFSSRIKS--G 214
F++ I S I + L + +I + + +
Sbjct: 496 VFLDFRFLEQKI---RHDSTAWNASGSILNTLQQLKF--YKPYICDNDPKYERLVNAILD 550
Query: 215 FSSR-----IKSGFSSCIKSSLSF 233
F + I S ++ ++ +L
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMA 574
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.24
Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 33/118 (27%)
Query: 156 ISNFSSFI--------KSGFSSFIKSGISSF---------IKSGISSFIKSDLSSFMKSG 198
+ F ++ F + ++ F I + + ++ + ++ +K+
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT- 119
Query: 199 FSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSSLSFCIKSGIPSFIKSGSSPFITYFNG 256
IK+ ++RI + F S+L ++ + G++ + F G
Sbjct: 120 -KELIKNYITARIMAK------RPFDKKSNSAL---FRA-----VGEGNAQLVAIFGG 162
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase,
aminoglycoside, phosphorylation, transferase-antibiotic
complex; HET: TOY; 1.80A {Enterococcus casseliflavus}
PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A*
3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A*
4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Length = 304
Score = 31.3 bits (71), Expect = 0.30
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 106 LTLDNLLLDTQNQMNGLIFIVDWGNLTL 133
+ D++L DT+ N + I+D+G+ +
Sbjct: 198 FSSDHILFDTEK--NTICGIIDFGDAAI 223
>3seo_A VOPL C terminal domain protein; alpha helix, structural protein;
2.31A {Vibrio parahaemolyticus} PDB: 3ryl_A
Length = 241
Score = 30.6 bits (68), Expect = 0.40
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 163 IKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIK 212
+++GF S K+ ++ K I+ F+K +L ++GFS + G ++R+
Sbjct: 184 LRAGFYSAFKNTDTA--KQDITKFMKDNL----QAGFSGYSYQGLTNRVA 227
>3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU
NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A*
3u75_A* 3u14_A*
Length = 509
Score = 30.2 bits (68), Expect = 0.77
Identities = 14/112 (12%), Positives = 36/112 (32%), Gaps = 17/112 (15%)
Query: 76 DRKGRRILVFFANNWDHTRYTLEIIYKSLI-----LTLDNLLLDTQNQMNGLIF------ 124
+ + + + +A+NW + ++S TL + + + + LI
Sbjct: 274 EVEHGVLGLAWASNWQYADQVPTNPWRSSTSLARNYTLRYVHTNAETKQLTLIQNPVLPD 333
Query: 125 ------IVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFSSF 170
+ N+ L +FK + + + + + G + F
Sbjct: 334 SINVVDKLKKKNVKLTNKKPIKTNFKGSTGLFDFNITFKVLNLNVSPGKTHF 385
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 27.0 bits (59), Expect = 8.5
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 54 TVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLL 113
T N I P + + + R F + + ++ +L + +
Sbjct: 43 TNENPNNYQKISATEPDTIKFSNFQLDRKTRFIVHGF------IDKGEDGWLLDMCKKMF 96
Query: 114 DTQNQMNGLIFIVDWGNL 131
+ +N VDW
Sbjct: 97 QVEK-VN--CICVDWRRG 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.398
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,806,741
Number of extensions: 212319
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 22
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.5 bits)