RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2694
         (262 letters)



>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score = 70.4 bits (172), Expect = 2e-15
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +K G  GVL +RD  G ++L++   +WD   +T   +++  ++T + ++ + + Q NG+ 
Sbjct: 6   LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIK 65

Query: 124 FIVDWGNLTLRQ-TSNNINSFKQVRTMLE 151
            I D              +  K++  +L 
Sbjct: 66  AIFDLEGWQFSHAFQITPSVAKKIAAVLT 94


>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 66

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 14 TDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNL 53
          TD FL RFL AR  ++D ++ LL NY  +R    E   +L
Sbjct: 24 TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADL 63


>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of
          phosphatidylinositol transfer protein sec14p {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 93

 Score = 49.4 bits (118), Expect = 9e-09
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 5  SDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH 46
           D  F     D  L RFL ARK +V  + ++  N   +R ++
Sbjct: 42 EDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDY 83


>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF),
          N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 75

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 8  DFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH 46
             P   D FL R+L AR  ++ KS  +L  ++ +R   
Sbjct: 28 PALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQK 66


>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
           phosphatidylinositol transfer protein sec14p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 203

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 22/136 (16%)

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWD----HTRYTLEIIYKSLILTLDNLL------- 112
           I    P      D+ GR +        +    +   + E + K+L+   ++++       
Sbjct: 7   IAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPAC 66

Query: 113 -LDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQ----------VNISNFSS 161
                + +     I+D   +++    + ++  ++   + +            +N     S
Sbjct: 67  SRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFS 126

Query: 162 FIKSGFSSFIKSGISS 177
                F  F+     S
Sbjct: 127 TAFRLFKPFLDPVTVS 142


>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
           middle domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 16/155 (10%), Positives = 35/155 (22%), Gaps = 23/155 (14%)

Query: 63  AIKDGLPGVLSNRDRKGRRILVFFANNWD----HTRYTLEIIYKSLILTLDNLL------ 112
            I+  L G +   D  G  +        D        + + + ++ +   + LL      
Sbjct: 4   VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQ 63

Query: 113 -LDTQNQMNGLIFIVDWGNLT-----------LRQTSNNINSFKQVRTMLEVQVNISNFS 160
                 ++  +  I D   L              +                  V      
Sbjct: 64  TTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLF 123

Query: 161 SFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFM 195
               +    F+       I   + +  K  L   +
Sbjct: 124 PVAYNLIKPFLSEDTRKKIMV-LGANWKEVLLKHI 157


>d1ys5a1 f.4.1.3 (A:2-156) Lipoprotein GNA1870 immunodominant domain
           {Neisseria meningitidis [TaxId: 487]}
          Length = 155

 Score = 31.8 bits (72), Expect = 0.037
 Identities = 6/65 (9%), Positives = 21/65 (32%)

Query: 114 DTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFSSFIKS 173
            + +    L + +D+          ++ S +    +    +        + SG   + ++
Sbjct: 58  GSDDAGGKLTYTIDFAAKQGNGKIEHLKSPELNVDLAAADIKPDGKRHAVISGSVLYNQA 117

Query: 174 GISSF 178
              S+
Sbjct: 118 EKGSY 122


>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 326

 Score = 27.8 bits (61), Expect = 1.5
 Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 113 LDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNF 159
           ++ Q++ N    IVD   +T+ Q  + +   + +R +  + + +   
Sbjct: 27  VELQHEYNCYFCIVDQHAITVWQDPHELR--QNIRRLAALYLAVGID 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 945,065
Number of extensions: 41402
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 8
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)