BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2696
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZRF8|RN207_HUMAN RING finger protein 207 OS=Homo sapiens GN=RNF207 PE=2 SV=2
Length = 634
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 69/116 (59%), Gaps = 9/116 (7%)
Query: 19 GPPEGEEAPTPTSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
GP EG P+ +PL+C +C Y PCLL C+H FCA CLRGR DG+L+CP+C
Sbjct: 7 GPLEG---PSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTCPLC 63
Query: 79 GQHTLLKEGSTLPPPDNVLKQLIEVA--NAENPPCANCD----KRDRNAMYFCSTC 128
T+LK S LPP D +L+ L++ + E CANCD ++D YFC+TC
Sbjct: 64 QHQTVLKGPSGLPPVDRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTC 119
>sp|A0JNG4|RN207_BOVIN RING finger protein 207 OS=Bos taurus GN=RNF207 PE=2 SV=1
Length = 556
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 16/128 (12%)
Query: 7 SGSMYQQSTEGTGPPEGEEAPTPTSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRG 66
SG+++ S EG G +G +PL+C +C Y PCLL C+H FCA CLRG
Sbjct: 2 SGAIFT-SLEGPGALDGTSG---------HPLVCPLCHAQYERPCLLDCFHEFCAGCLRG 51
Query: 67 RTVDGKLSCPICGQHTLLKEGSTLPPPDNVLKQLIEVA--NAENPPCANCD----KRDRN 120
R DG+L+CP+C T++K S LPP D +L+ L++ + E CANCD K+D
Sbjct: 52 RAADGRLACPLCQHQTVVKGPSGLPPVDRLLQFLVDSSGDGTEVVRCANCDLECGKQDAE 111
Query: 121 AMYFCSTC 128
YFC+TC
Sbjct: 112 TTYFCNTC 119
>sp|Q3V3A7|RN207_MOUSE RING finger protein 207 OS=Mus musculus GN=Rnf207 PE=2 SV=2
Length = 635
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 6/100 (6%)
Query: 36 NPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDN 95
+PL+C +C Y PCLL C+H FC CLRGR DG+LSCP+C TL+K S LPP D
Sbjct: 21 HPLVCPLCHGQYERPCLLDCFHDFCTGCLRGRATDGRLSCPLCQHQTLVKGPSGLPPVDR 80
Query: 96 VLKQLIEVA--NAENPPCANCD----KRDRNAMYFCSTCA 129
+L+ L++ + +E CANCD ++D YFC+TC
Sbjct: 81 LLQFLVDSSGDGSEAVRCANCDLECSQQDAETTYFCNTCG 120
>sp|D3ZQG6|TRIM2_RAT Tripartite motif-containing protein 2 OS=Rattus norvegicus GN=Trim2
PE=1 SV=2
Length = 744
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 23/132 (17%)
Query: 22 EGEEAPTPTSCG-PKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGK--LSCPIC 78
EG P+P K L+C +C + Y P +L C H+FC RCL+ LSCP+C
Sbjct: 4 EGASIPSPVVRQIDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVC 63
Query: 79 GQHTLLKEGSTLPPPDN-VLKQLIEV------ANAENPPC------------ANCDKRDR 119
Q ++L E +N + L++V +N E+P +C D
Sbjct: 64 RQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNGEDPSILQTVTAVAAGKPLSCPNHDG 123
Query: 120 NAM-YFCSTCAS 130
N M ++C +C +
Sbjct: 124 NVMEFYCQSCET 135
>sp|Q9C040|TRIM2_HUMAN Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1
SV=1
Length = 744
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 22 EGEEAPTPTSCG-PKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGK--LSCPIC 78
EG P+P K L+C +C + Y P +L C H+FC RCL+ LSCP+C
Sbjct: 4 EGTNIPSPVVRQIDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVC 63
Query: 79 GQHTLLKEGSTLPPPDN-VLKQLIEV------ANAENPPC------------ANCDKRDR 119
Q ++L E +N + L++V +NAE +C D
Sbjct: 64 RQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPNHDG 123
Query: 120 NAM-YFCSTCAS 130
N M ++C +C +
Sbjct: 124 NVMEFYCQSCET 135
>sp|Q60MF5|RN207_CAEBR Probable RING finger protein 207 homolog OS=Caenorhabditis briggsae
GN=CBG23170 PE=4 SV=3
Length = 836
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPD 94
+NPL C +C + + EP L SC H+ C +C +G SC C T P PD
Sbjct: 3 ENPLRCTICKNDFEEPILFSCQHTTCRKC-----SNGSPSCKTCSPGPSTSRSHT-PQPD 56
Query: 95 NVLKQLIEVANAENPPCANCDKRDRNAMYFCSTC 128
+ L++ + E CANC++ M++C TC
Sbjct: 57 KLAAFLLDASKEEMEQCANCEQITL-PMFYCETC 89
>sp|Q9ESN6|TRIM2_MOUSE Tripartite motif-containing protein 2 OS=Mus musculus GN=Trim2 PE=1
SV=1
Length = 744
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 22 EGEEAPTPTSCG-PKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGK--LSCPIC 78
EG P+P K L+C +C + Y P +L C H+FC RCL+ LSCP+C
Sbjct: 4 EGASIPSPVVRQIDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVC 63
Query: 79 GQHTLLKEGSTLPPPDN-VLKQLIEV------ANAENPPC------------ANCDKRDR 119
Q ++L E +N + L++V +N E+ +C D
Sbjct: 64 RQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNGEDSSILETVTAVAAGKPLSCPNHDG 123
Query: 120 NAM-YFCSTCAS 130
N M ++C +C +
Sbjct: 124 NVMEFYCQSCET 135
>sp|Q20548|RN207_CAEEL Probable RING finger protein 207 homolog OS=Caenorhabditis elegans
GN=F47G9.4 PE=4 SV=2
Length = 822
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPD 94
+NPL C +C + + EP LLSC H+ C +C G SC C T P PD
Sbjct: 3 ENPLQCTICKNEFEEPILLSCQHTTCRKC-----STGSPSCKSCSPIPSTSRSHT-PHPD 56
Query: 95 NVLKQLIEVANAENPPCANCDKRDRNAMYFCSTC 128
+ L++ + E CANC++ M++C TC
Sbjct: 57 KLAAFLLDASKEEMEECANCEQISL-PMFYCETC 89
>sp|F7H9X2|TRIM2_CALJA Tripartite motif-containing protein 2 OS=Callithrix jacchus
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 29/135 (21%)
Query: 22 EGEEAPTPTSCG-PKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGK--LSCPIC 78
EG P+P K L+C +C + Y P +L C H+FC RCL+ LSCP+C
Sbjct: 4 EGTNIPSPVVRQIDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVC 63
Query: 79 GQHTLLKEGSTLPPPDN----------------------VLKQLIEVANAENPPCANCDK 116
Q ++L E +N +L+ + VA + C N
Sbjct: 64 RQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNVEESSILETVTAVAAGKPLSCPN--- 120
Query: 117 RDRNAM-YFCSTCAS 130
D N M ++C +C +
Sbjct: 121 HDGNVMEFYCQSCET 135
>sp|A4IF63|TRIM2_BOVIN Tripartite motif-containing protein 2 OS=Bos taurus GN=TRIM2 PE=2
SV=1
Length = 744
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 28/121 (23%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGK--LSCPICGQHTLLKEGSTLPP 92
K L+C +C + Y P +L C H+FC RCL+ LSCP+C Q ++L E
Sbjct: 18 KQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSILPEKGVAAL 77
Query: 93 PDN----------------------VLKQLIEVANAENPPCANCDKRDRNAM-YFCSTCA 129
+N +L+ + VA + C N D N M ++C +C
Sbjct: 78 QNNFFITNLMDVLQRSPGSSAEESSILETVTAVAAGKPLSCPN---HDGNVMDFYCQSCE 134
Query: 130 S 130
+
Sbjct: 135 T 135
>sp|D2GXS7|TRIM2_AILME Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 28/121 (23%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGK--LSCPICGQHTLLKEGSTLPP 92
K L+C +C + Y P +L C H+FC RCL+ LSCP+C Q ++L E
Sbjct: 18 KQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSILPEKGVAAL 77
Query: 93 PDN----------------------VLKQLIEVANAENPPCANCDKRDRNAM-YFCSTCA 129
+N +L+ + VA + C N D N M ++C +C
Sbjct: 78 QNNFFITNLMDVLQRTPGSNVEESSILETVTAVAAGKPLSCPN---HDGNVMDFYCQSCE 134
Query: 130 S 130
+
Sbjct: 135 T 135
>sp|O75382|TRIM3_HUMAN Tripartite motif-containing protein 3 OS=Homo sapiens GN=TRIM3 PE=1
SV=2
Length = 744
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 23/138 (16%)
Query: 24 EEAPTP-TSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGR--TVDGKLSCPICGQ 80
E++P P K L+C +C D Y P +L C H+FC RCL+ LSCP+C Q
Sbjct: 5 EDSPGPEVQPMDKQFLVCSICLDRYQCPKVLPCLHTFCERCLQNYIPAQSLTLSCPVCRQ 64
Query: 81 HTLLKEGSTLPPPDN-VLKQLIEVA--------NAENP---------PCANCDKRDRNAM 122
++L E +N + L+E + E+P P + + +
Sbjct: 65 TSILPEQGVSALQNNFFISSLMEAMQQAPDGAHDPEDPHPLSVVAGRPLSCPNHEGKTME 124
Query: 123 YFCSTCASVRTGLMNCRS 140
++C C + G CR+
Sbjct: 125 FYCEACETAMCG--ECRA 140
>sp|Q9R1R2|TRIM3_MOUSE Tripartite motif-containing protein 3 OS=Mus musculus GN=Trim3 PE=1
SV=1
Length = 744
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 24 EEAPTP-TSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGK--LSCPICGQ 80
E++P P K L+C +C D Y P +L C H+FC RCL+ LSCP+C Q
Sbjct: 5 EDSPGPEVQPMDKQFLVCSICLDRYRCPKVLPCLHTFCERCLQNYIPPQSLTLSCPVCRQ 64
Query: 81 HTLLKEGSTLPPPDN--------VLKQLIEVA-NAENP---------PCANCDKRDRNAM 122
++L E +N ++Q E A + E+P P + + +
Sbjct: 65 TSILPEQGVSALQNNFFISSLMEAMQQAPEGAHDPEDPHPLSAVAGRPLSCPNHEGKTME 124
Query: 123 YFCSTCASVRTGLMNCRS 140
++C C + G CR+
Sbjct: 125 FYCEACETAMCG--ECRA 140
>sp|O70277|TRIM3_RAT Tripartite motif-containing protein 3 OS=Rattus norvegicus GN=Trim3
PE=1 SV=1
Length = 744
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 23/138 (16%)
Query: 24 EEAPTP-TSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGK--LSCPICGQ 80
E++P P K L+C +C D Y P +L C H+FC RCL+ LSCP+C Q
Sbjct: 5 EDSPGPEVQPMDKQFLVCSICLDRYRCPKVLPCLHTFCERCLQNYIPPQSLTLSCPVCRQ 64
Query: 81 HTLLKEGSTLPPPDN-VLKQLIEVA--------NAENP---------PCANCDKRDRNAM 122
++L E +N + L+E + E+P P + + +
Sbjct: 65 TSILPEQGVSALQNNFFISSLMEAMQQAPDGAHDPEDPHPLSAVAGRPLSCPNHEGKTME 124
Query: 123 YFCSTCASVRTGLMNCRS 140
++C C + G CR+
Sbjct: 125 FYCEACETAMCG--ECRA 140
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 48/189 (25%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLR--GRTVDGKLSCPIC-GQHTLLKEGSTLPPPD 94
L C +C D Y +P LL C H+FC CL T+ L CP C +H + +G P+
Sbjct: 41 LTCPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECRAEHNIPYDGVKAFQPN 100
Query: 95 NVLKQLIEVANAENP----------------------------PCANCD----------- 115
L +E+ P PCA+CD
Sbjct: 101 YTLTGFLEIHLQATPESAAEIEEYIHRYNLERCKICDEKADCEPCAHCDRKACKECRQTH 160
Query: 116 ----KRDRNAMY--FCSTCASVRTGLMNCRSSLDELQLNCDTEKMTIQSFCQGMIDAITK 169
KRD + + + N +D + +NC+T K I+ + + K
Sbjct: 161 MDMLKRDMSRLLNQVKRLANRITEASDNLSKGVDMMTMNCETTKAEIKEYFHRYQRDLKK 220
Query: 170 TQNSMIMEV 178
+++ +MEV
Sbjct: 221 KEDNFLMEV 229
>sp|Q55G16|RN113_DICDI RING finger protein 113 homolog OS=Dictyostelium discoideum
GN=rnf113 PE=4 SV=1
Length = 355
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 37 PLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNV 96
P C +C Y +P C H FC C K C +CG+ TL G+ + PP +
Sbjct: 284 PFACFICKKQYVDPVQTKCKHFFCEDCALTHNRKNK-KCALCGEPTL---GTFITPPKKI 339
Query: 97 LKQLIEVANA 106
L QL+E++ +
Sbjct: 340 LDQLMEISKS 349
>sp|Q865W2|TRI50_PIG E3 ubiquitin-protein ligase TRIM50 OS=Sus scrofa GN=TRIM50 PE=2
SV=1
Length = 486
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCL--RGRTVDGKLSCPICGQHTLLKEGSTLPP 92
++ L C VC + + EP +L C HS+C CL R +D +L CP+C Q S+ P
Sbjct: 11 EDRLQCPVCLEVFKEPLMLQCGHSYCKGCLLSLSRHLDSELRCPVCRQEV----DSSSSP 66
Query: 93 PDNVLKQLIEVANAENPPCANCDKRDRNAM-YFCSTCASVRTGL 135
P+ L ++IE P RN + FC + GL
Sbjct: 67 PNVSLARVIEALQLPGDPEPQVCTHHRNPLSLFCEKDQELICGL 110
>sp|P33288|RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2
Length = 501
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 40 CHVCDDYYTEPCLLSCYHSFCARCLRG-RTVDGKLSCPIC 78
CHVC D+Y P L SC H+FC+ C+R +VD K CP+C
Sbjct: 34 CHVCKDFYDSPMLTSCNHTFCSLCIRRCLSVDSK--CPLC 71
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPD 94
+N L C +C +Y+ E L+C HSFC+ C+ + K+ CPIC + K S + D
Sbjct: 400 ENELQCIICSEYFVEAVTLNCAHSFCSYCI-NEWMKRKVECPICRKDIKSKTRSLV--LD 456
Query: 95 NVLKQLIEVANAE 107
N + ++++ N+E
Sbjct: 457 NCISKMVDNLNSE 469
>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltl PE=1 SV=2
Length = 625
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCL-RGRTVDGKLSCPICGQHTLLKEGSTLPPPDNV 96
L C +C + EP +L C H+FC C+ + SCP C + ++ +T N+
Sbjct: 161 LTCPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCPECKEVLTERKYTTNRVLANL 220
Query: 97 LKQ-LIEVANAENPPCANCDKRDRNAMYFCSTCASVRTGLMNCRSSL 142
+K+ + V + + P CD+ D FC ++ + CR SL
Sbjct: 221 VKKAAVGVKDKDVKPKEKCDEHDERLKLFCKDDGTL--ACVICRDSL 265
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
+N L C +C +Y+ E L+C HSFC+ C+ + K+ CPIC
Sbjct: 398 ENELQCIICSEYFIEAVTLNCAHSFCSYCI-NEWMKRKIECPIC 440
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
+N L C +C +Y+ E L+C HSFC+ C+ + K+ CPIC
Sbjct: 399 ENELQCIICSEYFIEAVTLNCAHSFCSYCI-NEWMKRKIECPIC 441
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPD 94
+N L C +C +Y+ E L+C HSFC+ C+ + K+ CPIC + + S + D
Sbjct: 400 ENELQCIICSEYFIEAVTLNCAHSFCSFCI-SEWMKRKVECPICRKDIESRTNSLV--LD 456
Query: 95 NVLKQLIEVANAENPPCANCDKRDRNA 121
N + +++E +++ + R+R A
Sbjct: 457 NCISKMVERLSSDVKERRSVLIRERRA 483
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
+N L C +C +Y+ E L+C HSFC+ C+ + K+ CPIC
Sbjct: 401 ENELQCIICSEYFIEAVTLNCAHSFCSFCI-NEWMKRKVECPIC 443
>sp|O74747|RAD18_SCHPO Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rhp18 PE=3 SV=1
Length = 387
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 16 EGTGPPEGEEAPTPTSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSC 75
+ T P + + P+ G + L C +C +Y+ P + SC H+FC+ C+R + + C
Sbjct: 5 DATDPSDWNQTKIPSLKGLDSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPM-C 63
Query: 76 PIC---GQHTLLKEGSTLPPPDNVLK----QLIEVANAENPP 110
P C Q + L++ + L K L E EN P
Sbjct: 64 PACRAPEQESRLRKNTILEEILESFKVIRPTLFEFLKVENVP 105
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 36 NPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTL 83
N L C +C +++ E L+C HSFC+ C++ K CPIC Q L
Sbjct: 373 NELQCIICSEHFIEAVTLNCAHSFCSYCIKSWR-KRKEECPICRQEIL 419
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
L CH+C D+ P L C H+FC+ C+RG + + CP+C
Sbjct: 25 LRCHICKDFLKNPVLTPCGHTFCSLCIRG-YLSNEPKCPLC 64
>sp|P0CQ62|BRE1_CRYNJ E3 ubiquitin-protein ligase BRE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BRE1 PE=3 SV=1
Length = 820
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICG 79
L C C+ + + ++ C H+FC +CL R + CP CG
Sbjct: 765 LKCSCCEQNFKQQVIVKCMHTFCKQCLEQRIASRQRKCPACG 806
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 40 CHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVLKQ 99
C +C D + EP + C HSFC C+ G CP+C Q LLK N++
Sbjct: 16 CPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLRPNRQLANMVNN 75
Query: 100 LIEVAN-----AENPPCANCDKR-----DRNAMYFCSTCASVR 132
L E++ + CA +R +++ C CA R
Sbjct: 76 LKEISQEAREGTQGERCAVHGERLHLFCEKDGKALCWVCAQSR 118
>sp|P0CQ63|BRE1_CRYNB E3 ubiquitin-protein ligase BRE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BRE1 PE=3 SV=1
Length = 820
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICG 79
L C C+ + + ++ C H+FC +CL R + CP CG
Sbjct: 765 LKCSCCEQNFKQQVIVKCMHTFCKQCLEQRIASRQRKCPACG 806
>sp|Q03605|YNN1_CAEEL Uncharacterized RING finger protein T02C1.1 OS=Caenorhabditis
elegans GN=T02C1.1 PE=4 SV=1
Length = 160
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 40 CHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHT 82
C VC D++ EPC++ C HS+C C+ ++ CP+C HT
Sbjct: 8 CAVCLDFFVEPCIIECGHSYCRFCIESH-LNINEKCPLCRAHT 49
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 36 NPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTL 83
N L C +C +++ E L+C HSFC+ C++ K CPIC Q +
Sbjct: 378 NELQCIICSEHFIEAVTLNCAHSFCSYCIKSWK-KRKEECPICRQEIV 424
>sp|Q1PSW8|LIN41_MOUSE E3 ubiquitin-protein ligase TRIM71 OS=Mus musculus GN=Trim71 PE=1
SV=1
Length = 855
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 52 LLSCYHSFCARCLRGRTVDG----------KLSCPICGQHTLLKEGS---TLPPPDNVLK 98
+L C H+FC CL + KL CP+C Q +L E + LP +L
Sbjct: 57 VLPCLHAFCRPCLEAHRLPAPGGAGPAEALKLRCPVCDQKVVLAEAAGMDALPSSAFLLS 116
Query: 99 QLIE--VANAENPPCAN 113
L++ VA AE PP N
Sbjct: 117 NLLDAVVATAEEPPPKN 133
>sp|Q6CHI1|RAD18_YARLI Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RAD18 PE=3 SV=1
Length = 344
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKE 86
L CH+C +++T P + C H+FC+ C++ + CP C Q + +
Sbjct: 26 LRCHICKEFFTAPMITGCGHTFCSLCIQRYLTNTSQRCPTCMQEQQISQ 74
>sp|Q5RKG6|TRI35_RAT Tripartite motif-containing protein 35 OS=Rattus norvegicus
GN=Trim35 PE=2 SV=1
Length = 501
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRG-RTVDGKLSCPICGQHTLLKEGSTLPPP 93
K LLC VC D + + L C H+FC RC+ G V SCP+C + + E T
Sbjct: 16 KEELLCAVCYDPFRDAVTLRCGHNFCRRCVSGCWEVQTTPSCPVCKERAVPGELRTNHTL 75
Query: 94 DNVLKQLI 101
+N+++ L+
Sbjct: 76 NNLVETLL 83
>sp|Q8C006|TRI35_MOUSE Tripartite motif-containing protein 35 OS=Mus musculus GN=Trim35
PE=2 SV=2
Length = 501
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRG-RTVDGKLSCPICGQHTLLKEGSTLPPP 93
K LLC VC D + + L C H+FC RC+ G V SCP+C + + E T
Sbjct: 16 KEELLCAVCYDPFRDAVTLRCGHNFCRRCVSGCWEVQTTPSCPVCKERAVPGELRTNHTL 75
Query: 94 DNVLKQLI 101
+N+++ L+
Sbjct: 76 NNLVETLL 83
>sp|Q6FXX1|CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CWC24 PE=3 SV=1
Length = 226
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 37 PLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHT--LLKEGSTLPPPD 94
P C +C + Y P +C H FC +C R K SC ICG++T + K + L P D
Sbjct: 162 PFKCVLCKESYERPVKTNCGHYFCQKCFVNRIKIDK-SCFICGENTEGIAKMATDLVPMD 220
Query: 95 NVLK 98
N K
Sbjct: 221 NANK 224
>sp|Q99PQ2|TRI11_MOUSE E3 ubiquitin-protein ligase TRIM11 OS=Mus musculus GN=Trim11 PE=1
SV=1
Length = 467
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 40 CHVCDDYYTEPCLLSCYHSFCARCLR--GRTVDGKLSCPICGQHTLLKEGSTLPPPDNVL 97
C +C DY+T+P + C H+FC C+R +G +CP C + + + P+ L
Sbjct: 16 CAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECRELSAQRNLR----PNRPL 71
Query: 98 KQLIEVANAENPP 110
++ E+A +PP
Sbjct: 72 AKMAEMARRLHPP 84
>sp|Q4WZJ6|RAD18_ASPFU Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1
Length = 418
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
L C VC D++ P + SC H+FC+ C+R R + + CP C
Sbjct: 28 LRCQVCKDFFDNPVITSCSHTFCSLCIR-RCLSTEGKCPAC 67
>sp|B1H278|TRI11_RAT E3 ubiquitin-protein ligase TRIM11 OS=Rattus norvegicus GN=Trim11
PE=2 SV=1
Length = 467
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 40 CHVCDDYYTEPCLLSCYHSFCARCLR--GRTVDGKLSCPICGQHTLLKEGSTLPPPDNVL 97
C +C DY+T+P + C H+FC C+R +G +CP C + + + P+ L
Sbjct: 16 CAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECREVSAQRNLR----PNRPL 71
Query: 98 KQLIEVANAENPP 110
++ E+A +PP
Sbjct: 72 AKMAEMARRLHPP 84
>sp|Q02398|RAD18_EMENI Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=uvsH PE=2 SV=1
Length = 443
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
L C VC D++ P + SC H+FC+ C+R R + + CP C
Sbjct: 28 LRCQVCKDFFDNPVITSCSHTFCSLCIR-RCLSTEGKCPTC 67
>sp|P10862|RAD18_YEAST Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RAD18 PE=1 SV=1
Length = 487
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
L CH+C D+ P L C H+FC+ C+R ++ + +CP+C
Sbjct: 26 LRCHICKDFLKVPVLTPCGHTFCSLCIRTH-LNNQPNCPLC 65
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 40 CHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLK 85
C +C D EP + C HSFC C+ +G CP+C +H LL+
Sbjct: 16 CSICLDPMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRRHFLLQ 61
>sp|Q3ZEE5|TRIM5_HYLLA Tripartite motif-containing protein 5 OS=Hylobates lar GN=TRIM5
PE=3 SV=1
Length = 493
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCL----RGRTVDGKLSCPICG---QHTLLKEG 87
K + C +C + T+P L C HSFC CL + DG+ SCP+C QH ++
Sbjct: 10 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDGERSCPVCRISYQHKNIRPN 69
Query: 88 STLPPPDNVLKQLIEVANA--ENPPCANCDKRDRNAMYFC 125
+ N++++L EV + E +C + + FC
Sbjct: 70 RHVA---NIVEKLREVKLSPEEGQKVDHCARHGEKLLLFC 106
>sp|D3ZVM4|LIN41_RAT E3 ubiquitin-protein ligase TRIM71 OS=Rattus norvegicus GN=Trim71
PE=3 SV=1
Length = 855
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 52 LLSCYHSFCARCLRGRTVDG----------KLSCPICGQHTLLKEGS---TLPPPDNVLK 98
+L C H+FC CL + KL CP+C Q +L E + LP +L
Sbjct: 57 VLPCLHAFCRPCLEAHRLPAPGGAGPAEALKLRCPVCDQKVVLAEAAGMDALPSSAFLLS 116
Query: 99 QLIE--VANAENPPCAN 113
L++ VA A+ PP N
Sbjct: 117 NLLDAVVATADEPPPKN 133
>sp|Q4P3X7|BRE1_USTMA E3 ubiquitin-protein ligase BRE1 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=BRE1 PE=3 SV=1
Length = 817
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICG 79
L C C + Y L CYH+FC+ C+ R + CP C
Sbjct: 762 LQCSSCKERYRNRILTKCYHTFCSECIDSRVQTRQRKCPHCA 803
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 26 APTPTSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLR--GRTVDGKLSCPICGQHTL 83
A P +C + + C +C + +P + C H+FC +C+ G+T + K+ CP+C
Sbjct: 2 AGQPLACQLQEEVTCPICMEILQDPVTIDCGHNFCLQCISQVGKTSE-KIQCPLCK---- 56
Query: 84 LKEGSTLPPPDNVLKQLIEVANAENPPCANCDKRD-------RNAMYFC 125
L P+ +L L E + +P +K D YFC
Sbjct: 57 LSVNKNTFRPNKLLASLAEKIQSMDPADIQAEKEDSRCQRHKEKLHYFC 105
>sp|Q96F44|TRI11_HUMAN E3 ubiquitin-protein ligase TRIM11 OS=Homo sapiens GN=TRIM11 PE=1
SV=2
Length = 468
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 40 CHVCDDYYTEPCLLSCYHSFCARCLR--GRTVDGKLSCPICGQHTLLKEGSTLPPPDNVL 97
C +C DY+T+P + C H+FC C+R +G +CP C + + + P+ L
Sbjct: 16 CAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECRELSPQRNLR----PNRPL 71
Query: 98 KQLIEVANAENPP 110
++ E+A +PP
Sbjct: 72 AKMAEMARRLHPP 84
>sp|Q86XT4|TRI50_HUMAN E3 ubiquitin-protein ligase TRIM50 OS=Homo sapiens GN=TRIM50 PE=1
SV=1
Length = 487
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRT--VDGKLSCPICGQHTLLKEGSTLPP 92
++ L C +C + + EP +L C HS+C CL + +D +L CP+C Q +GS+
Sbjct: 11 EDWLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV---DGSS-SL 66
Query: 93 PDNVLKQLIEVANAENPPCANCDKRDRNAM-YFCSTCASVRTGL 135
P+ L ++IE P RN + FC + GL
Sbjct: 67 PNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGL 110
>sp|A0JN74|TRI11_BOVIN E3 ubiquitin-protein ligase TRIM11 OS=Bos taurus GN=TRIM11 PE=2
SV=1
Length = 468
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 40 CHVCDDYYTEPCLLSCYHSFCARCLR--GRTVDGKLSCPICGQHTLLKEGSTLPPPDNVL 97
C +C DY+T+P + C H+FC C+R +G +CP C + L + + P+ L
Sbjct: 16 CAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECRE--LFPQRNLR--PNRPL 71
Query: 98 KQLIEVANAENPP 110
++ E+A +PP
Sbjct: 72 AKMAEMARRLHPP 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,082,040
Number of Sequences: 539616
Number of extensions: 2923390
Number of successful extensions: 8362
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 303
Number of HSP's that attempted gapping in prelim test: 7894
Number of HSP's gapped (non-prelim): 721
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)