RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2696
(180 letters)
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 51.0 bits (122), Expect = 2e-09
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 23 GEEAPTPTSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHT 82
G + S + P C +C + P + C H FC C C IC Q T
Sbjct: 1 GSSGSSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEH-FRATPRCYICDQPT 59
Query: 83 LLKEGSTLPPPDNVLKQLIEVANAE 107
G P ++ +L + +
Sbjct: 60 ----GGIFNPAKELMAKLQKSGPSS 80
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 50.4 bits (121), Expect = 2e-09
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEG 87
L C C P LL C H+ C+ CL + CPIC L
Sbjct: 7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPLGAD 52
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 51.6 bits (123), Expect = 6e-09
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 22 EGEEAPTPTSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQH 81
+ EE + + +N L C +C +Y+ E L+C HSFC+ C+ + K+ CPIC +
Sbjct: 49 QKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCIN-EWMKRKIECPICRKD 107
Query: 82 TLLKEGSTLPPPDNVLKQLIE 102
+K + DN + +++
Sbjct: 108 --IKSKTYSLVLDNCINKMVN 126
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 48.3 bits (115), Expect = 4e-08
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 38 LLCHVCDDYYTEPC-LLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNV 96
L+C +C Y+ + ++ C HSFC C+ R ++ CPIC D
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIV-RYLETSKYCPICDVQVHKTRPLLNIRSDKT 74
Query: 97 LKQLIE 102
L+ ++
Sbjct: 75 LQDIVY 80
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 48.0 bits (114), Expect = 5e-08
Identities = 15/67 (22%), Positives = 22/67 (32%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVL 97
C +C + EP L C H+ C C + L CP C + V
Sbjct: 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVN 75
Query: 98 KQLIEVA 104
+L +
Sbjct: 76 VELWTII 82
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 46.2 bits (110), Expect = 1e-07
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLR-----GRTVDGKLSCPICGQHTLLKEGSTLPP 92
+ C +C + EP C HSFC C+ R DGK +CP+C
Sbjct: 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN----LK 75
Query: 93 PDNVLKQLIE 102
P+ + ++E
Sbjct: 76 PNLHVANIVE 85
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 47.3 bits (112), Expect = 2e-07
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVL 97
+C C + +P C+H+ C CL+ SCP C +H L + + + P+ +L
Sbjct: 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPAC-RHDLGQ--NYIMIPNEIL 135
Query: 98 KQLIE 102
+ L++
Sbjct: 136 QTLLD 140
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 46.1 bits (109), Expect = 3e-07
Identities = 13/58 (22%), Positives = 16/58 (27%)
Query: 21 PEGEEAPTPTSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
P + C C + P C H+ C CL SCP C
Sbjct: 36 PASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPAC 93
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 45.1 bits (107), Expect = 3e-07
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 38 LLCHVCDDYYTE----PCLLSCYHSFCARCLRG--RTVDGKLSCPICGQHTLLKEGSTLP 91
L C +C + +TE P LL C H+ C +CL + + CP C + T + + L
Sbjct: 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLT 75
Query: 92 P 92
Sbjct: 76 D 76
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 47.5 bits (112), Expect = 5e-07
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 24 EEAPTPTSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
+E LC +C + + + C H C CL CP C
Sbjct: 319 QEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 44.8 bits (106), Expect = 7e-07
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 38 LLCHVCDDYYTEP-CLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNV 96
L C +C +Y+ + C H++C+ C+R + + K CP C + + +
Sbjct: 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIR-KFLSYKTQCPTCCVTVTEPD----LKNNRI 77
Query: 97 LKQLIE 102
L +L++
Sbjct: 78 LDELVK 83
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 44.7 bits (106), Expect = 9e-07
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRG--RTVDGKLSCPICGQHTLLKEGSTLPPPDN 95
L C +C + EP C H FC C+ G CP+C +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS----LQEST 77
Query: 96 VLKQLIE 102
QL+E
Sbjct: 78 RFSQLVE 84
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 43.8 bits (104), Expect = 1e-06
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRG-----RTVDGKLSCPICGQHTLLKEGSTLPP 92
+ C +C + T+P L C HSFC CL G+ SCP+C +
Sbjct: 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN----IR 75
Query: 93 PDNVLKQLIE 102
P+ + ++E
Sbjct: 76 PNRHVANIVE 85
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 43.6 bits (103), Expect = 1e-06
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 38 LLCHVCDDYYTEPCLLS-CYHSFCARCLRGRTVD-GKLSCPICGQHTLLKEGSTLPPPDN 95
LLC +C D T+ ++ C +S+C C+R ++ + +CP C Q+ + + +
Sbjct: 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD---ALIANK 70
Query: 96 VLKQLIEVANAENPPCANCDKR 117
L+Q + E K+
Sbjct: 71 FLRQAVNNFKNETGYTKRLRKQ 92
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 43.4 bits (103), Expect = 1e-06
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRG------RTVDGKLSCPICGQHTLLKEGSTLP 91
+ C +C + TEP L C HS C C+ ++ GK SCP+CG +
Sbjct: 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH----L 68
Query: 92 PPDNVLKQLIE 102
+ L ++E
Sbjct: 69 QANQHLANIVE 79
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 42.7 bits (101), Expect = 2e-06
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRG--RTVDGKLSCPIC 78
C VC +Y EP ++ C H+FC C+ ++ CP+C
Sbjct: 16 ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 42.7 bits (101), Expect = 2e-06
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRG--RTVDGKLSCPICGQ 80
++C +C D +P + C H+FC +C+ T G CP+C
Sbjct: 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKT 65
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 42.0 bits (99), Expect = 3e-06
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRG--RTVDGKLSCPIC 78
++C +C D +P + C H+FC +C+ T G CP+C
Sbjct: 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 42.5 bits (100), Expect = 5e-06
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVL 97
C +C E C H FC C+ D CP+ + L + PDN
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ----LFPDNFA 74
Query: 98 KQLIE 102
K+ I
Sbjct: 75 KREIL 79
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 40.5 bits (95), Expect = 1e-05
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 17 GTGPPEGEEAPTPTSCGPKNPLLCHVCDDYYTEPCLLS-CYHSFCARCLRGR-TVDGKLS 74
G+ GE+ P P LLC +C D T+ ++ C +S+C C+R + +
Sbjct: 1 GSSGSSGEDDPIPDE------LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHT 54
Query: 75 CPICGQHTLLKEGSTLPPPDN 95
CP C Q+ + + L P +
Sbjct: 55 CPTCHQNDVSPD--ALSGPSS 73
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 40.2 bits (94), Expect = 2e-05
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 23 GEEAPTPTSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHT 82
G + + C +C P L C H FC C++ C +C Q
Sbjct: 1 GSSGSSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVK-GASWLGKRCALCRQE- 58
Query: 83 LLKEGSTLPPP 93
+ E P
Sbjct: 59 -IPEDFLDSGP 68
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 39.8 bits (93), Expect = 2e-05
Identities = 10/43 (23%), Positives = 12/43 (27%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQ 80
C C P C H FC C+ C C +
Sbjct: 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQE 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 41.3 bits (96), Expect = 3e-05
Identities = 14/65 (21%), Positives = 24/65 (36%)
Query: 34 PKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPP 93
+ LC C + P C H +C+ CL G +C C + +EG ++
Sbjct: 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILES 87
Query: 94 DNVLK 98
+
Sbjct: 88 SSAFP 92
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 40.3 bits (94), Expect = 7e-05
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 38 LLCHVCDDYYTEP-CLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNV 96
L+C +C D C H FCA C+ G CP C + + K PD
Sbjct: 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR---PDPN 111
Query: 97 LKQLIE 102
LI
Sbjct: 112 FDALIS 117
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 38.6 bits (90), Expect = 8e-05
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 38 LLCHVCDDYYTEPC-LLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPD 94
+LC +C Y + + C H+FC C+ R CP C + + L P
Sbjct: 16 ILCSICKGYLIDATTITECLHTFCKSCIV-RHFYYSNRCPKCNIV--VHQTQPLSGPS 70
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 39.1 bits (91), Expect = 1e-04
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 38 LLCHVCDDYYTEP-CLLSCYHSFCARCLRGRTVDGKLSCPIC 78
L C C + EP CL C H FC+ C+ CP+C
Sbjct: 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDC---IGTGCPVC 61
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 37.9 bits (88), Expect = 2e-04
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 38 LLCHVCDDYYTEPCLL-SCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNV 96
C +C + + L C C C+R + + CP C L+E + V
Sbjct: 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEV 82
Query: 97 LKQL 100
+QL
Sbjct: 83 TQQL 86
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 37.2 bits (86), Expect = 5e-04
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQH 81
+ C +C+ +P SC H FC C+ CP C
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYP 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 37.4 bits (86), Expect = 7e-04
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQ 80
C +C E C H FC C+ D CP+ +
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNE 61
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 34.9 bits (80), Expect = 0.001
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 23 GEEAPTPTSCGPKNPLLCHVCDDYYTEP-------CLLSCYHSFCARCLRGRTVDGKLSC 75
G + T P + C +C D Y+E C H FC++CLR ++ +C
Sbjct: 1 GSSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTC 59
Query: 76 PIC 78
P C
Sbjct: 60 PTC 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.005
Identities = 31/181 (17%), Positives = 48/181 (26%), Gaps = 63/181 (34%)
Query: 25 EAPTPTSCG---PKNPL------LCHVCDDYYTEP--------CLLSCYHSFCARCLRGR 67
PT P P L +V EP L C F L G
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYV--SSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 68 TVDGKLSCPICGQHTLLKEGSTLPPPD--------NVLKQLIEVANAENPPCANCDKRDR 119
+ H L + L + ++K I P DK+
Sbjct: 100 DI-----------HALA---AKLLQENDTTLVKTKELIKNYITARIMAKRP---FDKKSN 142
Query: 120 NAMYFCSTCASVRTG---LM-------NCRSSLDELQLNCDTEKMTIQSFCQGMIDAITK 169
+A++ +V G L+ N +EL+ T + + I +
Sbjct: 143 SALF-----RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL----IKFSAE 193
Query: 170 T 170
T
Sbjct: 194 T 194
Score = 30.8 bits (69), Expect = 0.29
Identities = 37/234 (15%), Positives = 66/234 (28%), Gaps = 102/234 (43%)
Query: 10 MYQQSTEGTGPPE---GEEAPTPTSC---GPKNPLLCHVCDD-YYTEPCLL----SCY-- 56
+++ +G E E TS K L +T+P L + +
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL-----SATQFTQPALTLMEKAAFED 1746
Query: 57 ---------------HS---FCARC----------------LRGRTVD--------GKLS 74
HS + A RG T+ G+ +
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 75 CPIC----GQHTLLKEGSTLPPPDNVLKQ-------LIEVANAENPPCANCDKRDRNAMY 123
+ G+ L V+++ L+E+ N N + N Y
Sbjct: 1807 YGMIAINPGRVAASFSQEAL---QYVVERVGKRTGWLVEIVN------YNVE----NQQY 1853
Query: 124 FCSTCASVRTGLMNCRSSLDELQLNCDTEKMTIQSFCQGMIDAITKTQNSMIME 177
+ G + +LD + + K +Q ID I + Q S+ +E
Sbjct: 1854 VAA-------GDLR---ALDTVTNVLNFIK--LQK-----ID-IIELQKSLSLE 1889
Score = 27.3 bits (60), Expect = 3.3
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 9 SMYQQSTEGTGPPEGEEAPTP 29
S+ + S E E P+P
Sbjct: 322 SILEDSLEN-----NEGVPSP 337
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 33.3 bits (76), Expect = 0.005
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 30 TSCGPKNPLLCHVCDDYYTEP-------CLLSCYHSFCARCLRGRTVDGKLSCPIC 78
T P + C +C D Y+E C H FC++CLR ++ +CP C
Sbjct: 3 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCPTC 57
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 31.7 bits (72), Expect = 0.021
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 38 LLCHVCDDYYTEP-------CLLSCYHSFCARCLRGRTVDGKLSCPIC 78
+ C +C D Y+E C H FC++CLR ++ +CP C
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCPTC 50
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.44.1.3
Length = 93
Score = 31.3 bits (70), Expect = 0.040
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 23 GEEAPTPTSCGPKNPLLCHVCDDYYTEP----CLLSCYHSFCARCLR----GRTVDGKLS 74
G + + PL C +C + + C H FC C R + G++
Sbjct: 1 GSSGSSGSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVY 60
Query: 75 CPIC 78
CP
Sbjct: 61 CPSG 64
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 30.7 bits (69), Expect = 0.045
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 40 CHVC-DDYYTEPCLL----SCYHSFCARCLRGRTVDGKLSCPICGQ 80
C C Y P L C H+ C C+ V G +CP CG
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGT 51
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 30.1 bits (68), Expect = 0.089
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 40 CHVC-DDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
C +C +D L C H+FC C+ R + +CP+C
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCIT-RWIRQNPTCPLC 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 30.5 bits (68), Expect = 0.13
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 34 PKNPLLCHVCDDYYTE-------PCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKE 86
+ C +C D Y+E C H FC++CLR ++ +CP C + K
Sbjct: 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCPTCRKKINHKR 62
Query: 87 GST-LPPPDNVLKQLIEVANAENPPCANCDKRDRNAMYFCSTC 128
V + +E FCS C
Sbjct: 63 YHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC 105
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 30.2 bits (67), Expect = 0.16
Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 50 PCLLSCYHSFCARCLRG----RTVDGKLSCPICGQHTLLKEGSTLP 91
L C H+F CL DG L CP C K G+
Sbjct: 56 GRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 28.1 bits (63), Expect = 0.36
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 40 CHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
C +C D +L C HSFC +C+ + D +CPIC
Sbjct: 18 CCICMDGR-ADLILPCAHSFCQKCID-KWSDRHRNCPIC 54
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 28.3 bits (62), Expect = 0.68
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 40 CHVCDD-YYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
C C ++ C H FC C G CP C
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGC 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.72
Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 22/133 (16%)
Query: 35 KNPLLCHVCDDYYTEPCLLSCYHSFCARC--L---RGRTVDGKLSCPICGQHTLLKEGST 89
+N LL V + ++F C L R + V LS +L T
Sbjct: 244 ENCLL--VLLNVQNAKAW----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 90 LPPPD--NVLKQLIEVANAENPPCANCDKRDRNAMYFCSTCASVRTGLMNCRSSLDE-LQ 146
L P + ++L + ++ + P N S+R GL D
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREV----LTTNPRRLSIIAESIRDGL--AT--WDNWKH 349
Query: 147 LNCDTEKMTIQSF 159
+NCD I+S
Sbjct: 350 VNCDKLTTIIESS 362
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel,
ligand binding protein; HET: SAM; 2.20A {Staphylococcus
aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Length = 340
Score = 29.1 bits (66), Expect = 0.82
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 57 HSFCARCLRGR-TVDGKL-SC 75
SFC+ C R R + DGK C
Sbjct: 258 QSFCSTCTRARLSSDGKFYGC 278
>3m1t_A Putative phosphohydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE GOL; 1.62A {Shewanella
amazonensis}
Length = 275
Score = 27.7 bits (62), Expect = 2.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 82 TLLKEGSTLPPPDNVLKQLIEVANAENP 109
LL++ LP + +L++V N E+
Sbjct: 6 ALLQKVDELPRLPKAIAELLDVVNNEDS 33
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 27.7 bits (60), Expect = 2.5
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 22/126 (17%)
Query: 3 MYRGSGSMYQQSTEGTGPPEGEEAPTPTSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCAR 62
S + + + E ++ S + +C +C E +
Sbjct: 83 FLTRSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICM-VSNETQGEFTKDTLPTP 141
Query: 63 CLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVLKQLIEVANAENPPCANCDKRDRNAM 122
C CG +P + K I +NA +P ++ N+
Sbjct: 142 -----------ICINCG----------VPADYELTKSSINCSNAIDPNANPQNQFGVNSE 180
Query: 123 YFCSTC 128
C C
Sbjct: 181 NICPAC 186
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding
protein, unknown function, structural genomics, NPPSFA;
NMR {Mus musculus} SCOP: g.41.15.1
Length = 79
Score = 25.8 bits (57), Expect = 2.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 60 CARCLRGRTVDGKLSCPICGQHTLLK 85
C C + + ++ C CG TL K
Sbjct: 18 CHGCFKTTSDMNRVFCGHCGNKTLKK 43
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1*
2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1*
1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Length = 55
Score = 25.3 bits (56), Expect = 2.9
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 67 RTVDGKLS----CPICGQHTLLKE 86
R KL P+ +H + +E
Sbjct: 29 RNTQAKLELKKYDPVAKKHVVFRE 52
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 3.5
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 29/67 (43%)
Query: 65 RGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVLKQLIEVANAENPPCANCDKRDRNAMYF 124
RG ++ L+CP C + +++E R
Sbjct: 14 RGPNLNIVLTCPECKVYP---------------PKIVE--------------RFSEGDVV 44
Query: 125 CSTCASV 131
C+ C V
Sbjct: 45 CALCGLV 51
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 27.2 bits (59), Expect = 3.6
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 37 PLLCHVCDDYYTEPCL-LSCYHSFC---ARCLRGRTVDGKLSCPICGQHTLLKE 86
L+C + T PC ++C H C A L+ CP+C + +
Sbjct: 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 25.1 bits (55), Expect = 5.3
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 11/51 (21%)
Query: 39 LCHVCDDYYTEPCLLSC------YHSFCARCLR-----GRTVDGKLSCPIC 78
+C C E L+ H CA C + R + G+L C C
Sbjct: 17 ICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPC 67
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 26.4 bits (57), Expect = 5.9
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 4/54 (7%)
Query: 37 PLLCHVCDDYYTEPCLLS-CYHSFC---ARCLRGRTVDGKLSCPICGQHTLLKE 86
L C + P C H C L + CP+C L+
Sbjct: 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 24.9 bits (54), Expect = 5.9
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 40 CHVCDDYYTEP-CLLSCYHSFCARCLRG-RTVDGKLSCPICGQ 80
C++C + +C C+ + + CP C
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 25.2 bits (55), Expect = 6.0
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 33 GPKNPLLCHVCDDYYTE---PCLLSCYHSFCARCLRG 66
G C +C Y + C FC CL+
Sbjct: 1 GSSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ 37
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 26.2 bits (58), Expect = 6.4
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 80 QHTLLKEGSTLPPPDNVLKQLIEVANAENPP 110
H+ P+ V + + A P
Sbjct: 220 AHSKQVFREAAQNPEEVAEVFLTALRAPKPT 250
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond
formation; 3.10A {Deinococcus radiodurans} SCOP:
i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Length = 82
Score = 24.7 bits (54), Expect = 6.8
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 67 RTVDGKLS----CPICGQHTLLKE 86
R KL P+ +H + +E
Sbjct: 56 RNTQAKLELKKYDPVAKKHVVFRE 79
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 24.7 bits (54), Expect = 7.7
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 23 GEEAPTPTSCGPKNPLLCHVC-DDYY--TEPCLLSCYHSFCARC----LRGRTVDGKLSC 75
G + T + L C VC +DY L C H F C L SC
Sbjct: 1 GSSGSSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-----SC 55
Query: 76 PICGQHTLLKEGSTLPPP 93
P+C + +L + + PP
Sbjct: 56 PVC-RKSLTGQNTATNPP 72
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 25.8 bits (57), Expect = 9.2
Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 57 HSFCARC---LRGRTVDGKLSCPICGQH 81
H +C C + + + C C +
Sbjct: 107 HKYCGYCGHEMYPSKTEWAMLCSHCRER 134
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 25.8 bits (56), Expect = 9.6
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 18 TGPPEGEEAPTPTSCGPKNPLLCHVCDDYYTEPC 51
GP + +C PK L+ +V T
Sbjct: 358 EGPADDANCIAIKNCDPKADLMLYVSKMVPTSDK 391
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.432
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,638,555
Number of extensions: 144361
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 130
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)