RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2696
(180 letters)
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 40.2 bits (94), Expect = 4e-06
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEG 87
L C C P LL C H+ C+ CL + CPIC L
Sbjct: 7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGAD 52
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 40.4 bits (94), Expect = 1e-05
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRG--RTVDGKLSCPICGQHTLLKEGSTLPPPDN 95
L C +C + EP C H FC C+ G CP+C +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81
Query: 96 VLKQLIEVANA 106
++++L+++ A
Sbjct: 82 LVEELLKIICA 92
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 38.7 bits (90), Expect = 3e-05
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVL 97
+ C +C+ +P SC H FC C+ CP C P + L
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYP--CFPTDLESPVKSFL 81
Query: 98 KQL 100
L
Sbjct: 82 NIL 84
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 38.1 bits (88), Expect = 4e-05
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 39 LCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPIC 78
LC +C + + + C H C CL CP C
Sbjct: 25 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 64
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 33.1 bits (75), Expect = 0.003
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVL 97
C + + +P ++S ++ ++ G +CP + L P+ VL
Sbjct: 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG----LTPNYVL 64
Query: 98 KQLIE 102
K LI
Sbjct: 65 KSLIA 69
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 32.6 bits (74), Expect = 0.004
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 40 CHVCDDYYTEPC-LLSCYHSFCARCLRGRTVDGKLSCPIC 78
C +C + + L C H+FC C+ R + +CP+C
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCIT-RWIRQNPTCPLC 46
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 32.1 bits (72), Expect = 0.006
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 38 LLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVL 97
L + + EPC+ ++ + + P+ P+ +
Sbjct: 8 LCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL----TQEQLIPNLAM 63
Query: 98 KQLIEVANAENP 109
K++I+ +EN
Sbjct: 64 KEVIDAFISENG 75
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 29.7 bits (66), Expect = 0.056
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 30 TSCGPKNPLLCHVCDDYYTEPCLLSCYHSFCARCLRGRTVDGKLSCPICGQHTLLKE 86
+ C H+F C+ R + + CP+ + ++
Sbjct: 32 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWEFQK 87
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 28.5 bits (62), Expect = 0.20
Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 51 CLLSCYHSFCARC----LRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVLK 98
L C H+F C DG L CP C K G+ V +
Sbjct: 57 RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKMEVFR 108
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 27.1 bits (59), Expect = 0.36
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 40 CHVCDDYYTEP-----CLLSCYHSFCARCLRGRTVDGKLSCPICGQH 81
C C + C H+ C C+ V G +CP CG
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTP 52
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C,
TmoC {Pseudomonas mendocina [TaxId: 300]}
Length = 109
Score = 27.7 bits (61), Expect = 0.43
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 55 CYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNVLKQL 100
C H G G ++C G + P D L +
Sbjct: 44 CPHQ-EILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDAALAEY 88
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 26.4 bits (58), Expect = 0.46
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 40 CHVCDDYYTEP----CLLSCYHSFCARCLRGRTVDGKLSCPIC 78
C VC + L C H F A C+ + +CP+C
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVD-MWLGSHSTCPLC 49
>gi|152994664|ref|YP_001339499.1|(2-54:56) ribosomal protein L33
[Marinomonas sp. MWYL1]
gi|189042692|sp|A6VSY5.1|RL33_MARMS RecName: Full=50S
ribosomal protein L33 gi|150835588|gb|ABR69564.1|
ribosomal protein L33 [Marinomonas sp. MWYL1]
gi|87120855|ref|ZP_01076747.1| RpmG protein
[Marinomonas sp. MED121] gi|86163693|gb|EAQ64966.1|
RpmG protein [Marinomonas sp. MED121]
gi|92115086|ref|YP_575014.1| 50S ribosomal protein L33P
[Chromohalobacter salexigens DSM 3043]
gi|122419200|sp|Q1QT93.1|RL33_CHRSD RecName: Full=50S
ribosomal protein L33 gi|91798176|gb|ABE60315.1| LSU
ribosomal protein L33P [Chromohalobacter salexigens DSM
3043] E=1e-10 s/c=1.31 id=57% cov=102%
Length = 53
Score = 25.7 bits (57), Expect = 0.85
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 4/25 (16%)
Query: 67 RTVDGKLS----CPICGQHTLLKEG 87
R KL P+ +H + KE
Sbjct: 28 RNTPDKLEMKKFDPVVRKHVMYKEA 52
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain
II {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 138
Score = 27.0 bits (59), Expect = 0.93
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 18 TGPPEGEEAPTPTSCGPKNPLLCHVCDDYYTE 49
GP + +C PK L+ +V T
Sbjct: 15 EGPADDANCIAIKNCDPKADLMLYVSKMVPTS 46
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one
binding) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 66
Score = 25.8 bits (57), Expect = 1.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 60 CARCLRGRTVDGKLSCPICGQHTLLK 85
C C + + ++ C CG TL K
Sbjct: 11 CHGCFKTTSDMNRVFCGHCGNKTLKK 36
>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter
jejuni [TaxId: 197]}
Length = 286
Score = 27.1 bits (59), Expect = 1.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 83 LLKEGSTLPPPDNVLKQLIEVANAENP 109
LLK LPP + + +L + + N
Sbjct: 10 LLKSVEVLPPLPDTVSKLRKYVSEANS 36
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 26.3 bits (57), Expect = 1.2
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 38 LLCHVCDDYYTEPCLLS-CYHSFCARCLRGRTVDGKLSCPICGQHTLLKEGSTLPPPDNV 96
L C C + EP L C H FC+ C+ CP+C +++ +
Sbjct: 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCI---GTGCPVCYTPAWIQD----LKINRQ 75
Query: 97 LKQLIE 102
L +I+
Sbjct: 76 LDSMIQ 81
>d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia
coli [TaxId: 562]}
Length = 52
Score = 25.0 bits (55), Expect = 1.4
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 67 RTVDGKLS----CPICGQHTLLKEG 87
RT KL P+ QH + KE
Sbjct: 27 RTKPEKLELKKFDPVVRQHVIYKEA 51
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 24.7 bits (53), Expect = 1.6
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 40 CHVCDDYYTE----PCLLSCYHSFCARCLRGRTVDGKLSCPICGQ 80
C +C + +C + C C D CP C +
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 47
>d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus
thermophilus [TaxId: 274]}
Length = 45
Score = 23.0 bits (50), Expect = 5.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 75 CPICGQHTLLKE 86
CP C +HT+ +E
Sbjct: 32 CPWCRKHTVHRE 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.432
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 678,041
Number of extensions: 32169
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 44
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)