Query psy2697
Match_columns 165
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Aug 16 22:54:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06945 DUF1289: Protein of u 39.6 22 0.00047 22.8 1.6 22 108-129 23-44 (51)
2 COG3460 Uncharacterized enzyme 30.9 16 0.00035 28.6 -0.1 15 106-120 102-116 (117)
3 PF05823 Gp-FAR-1: Nematode fa 20.8 18 0.00039 27.4 -1.4 53 86-138 6-60 (154)
4 PF10950 DUF2775: Protein of u 16.6 41 0.00089 25.1 -0.3 10 114-123 6-15 (108)
5 PF07237 DUF1428: Protein of u 15.5 49 0.0011 24.7 -0.1 19 114-132 81-99 (103)
6 PF11491 DUF3213: Protein of u 11.0 85 0.0018 23.6 0.0 35 86-120 48-86 (88)
7 KOG0525|consensus 9.1 88 0.0019 28.1 -0.6 22 130-151 270-297 (362)
8 COG5559 Uncharacterized conser 8.0 1.2E+02 0.0026 21.8 -0.1 13 111-123 38-50 (65)
9 KOG3921|consensus 8.0 1.5E+02 0.0033 26.8 0.4 15 17-31 19-33 (360)
10 PF11372 DUF3173: Domain of un 7.1 1.7E+02 0.0036 20.2 0.2 28 34-61 6-45 (59)
No 1
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=39.61 E-value=22 Score=22.75 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=18.8
Q ss_pred CHHHhhhhcccchhhhhhhhhh
Q psy2697 108 DLKEILSWKGVMKDERLDLMKE 129 (165)
Q Consensus 108 dlkeilswkgvmkderldlmke 129 (165)
.+.||..|+..-.++|..++..
T Consensus 23 T~dEI~~W~~~s~~er~~i~~~ 44 (51)
T PF06945_consen 23 TLDEIRDWKSMSDDERRAILAR 44 (51)
T ss_pred cHHHHHHHhhCCHHHHHHHHHH
Confidence 4789999999999999888764
No 2
>COG3460 Uncharacterized enzyme of phenylacetate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.92 E-value=16 Score=28.61 Aligned_cols=15 Identities=53% Similarity=0.744 Sum_probs=13.0
Q ss_pred CcCHHHhhhhcccch
Q psy2697 106 KPDLKEILSWKGVMK 120 (165)
Q Consensus 106 kpdlkeilswkgvmk 120 (165)
-||.++++|||||-|
T Consensus 102 ~~De~~~m~~~~~~~ 116 (117)
T COG3460 102 IPDEIEHMSWKEVKK 116 (117)
T ss_pred ccchhceeeecccCC
Confidence 589999999999854
No 3
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=20.79 E-value=18 Score=27.43 Aligned_cols=53 Identities=36% Similarity=0.411 Sum_probs=32.2
Q ss_pred hhhhchhhhhhcCccchhccCcCHHHhhhhcccch--hhhhhhhhhhcCCchhcc
Q psy2697 86 MKEEMPDLMKEEKPDLMKEEKPDLKEILSWKGVMK--DERLDLMKEEMPDLKEIL 138 (165)
Q Consensus 86 mkeempdlmkeekpdlmkeekpdlkeilswkgvmk--derldlmkeempdlkeil 138 (165)
.|+-+|.-..+.--+|-.+||+.++|+++=-+-.+ |+.++.+|+..|.|.+.+
T Consensus 6 ~k~~iP~ev~~~~~~Lt~eeK~~lkev~~~~~~~~~~de~i~~LK~ksP~L~~k~ 60 (154)
T PF05823_consen 6 YKELIPSEVVEFYKNLTPEEKAELKEVAKNYAKFKNEDEMIAALKEKSPSLYEKA 60 (154)
T ss_dssp HHTT--HHHHHHHHH--TTTHHHHHHHHTT-------TTHHHHHHHH-HHHHHHH
T ss_pred HHHhCcHHHHHHHHcCCHHHHHHHHHHHHHccccCCHHHHHHHHHHhCHHHHHHH
Confidence 45556666666666777889999999875333333 778999999999887653
No 4
>PF10950 DUF2775: Protein of unknown function (DUF2775); InterPro: IPR024489 This eukaryotic family includes a number of plant organ-specific proteins. While their function is unknown, their predicted amino acid sequence suggests that these proteins could be exported and glycosylated [].
Probab=16.61 E-value=41 Score=25.07 Aligned_cols=10 Identities=60% Similarity=1.066 Sum_probs=8.1
Q ss_pred hhcccchhhh
Q psy2697 114 SWKGVMKDER 123 (165)
Q Consensus 114 swkgvmkder 123 (165)
-||.||||+-
T Consensus 6 YWK~vMKDqp 15 (108)
T PF10950_consen 6 YWKDVMKDQP 15 (108)
T ss_pred HHHHhhcCCC
Confidence 3999999963
No 5
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=15.54 E-value=49 Score=24.70 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=14.0
Q ss_pred hhcccchhhhhhhhhhhcC
Q psy2697 114 SWKGVMKDERLDLMKEEMP 132 (165)
Q Consensus 114 swkgvmkderldlmkeemp 132 (165)
.|.-+|.|.|+.-+.++||
T Consensus 81 ~~~k~m~DPrm~~~~~~mP 99 (103)
T PF07237_consen 81 ANAKMMADPRMQEMDNEMP 99 (103)
T ss_dssp HHHHHHCSHHHHHTTSS-S
T ss_pred HHHHhhcCcCcCCCCCCCC
Confidence 3567888999888777776
No 6
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=10.98 E-value=85 Score=23.61 Aligned_cols=35 Identities=31% Similarity=0.695 Sum_probs=10.0
Q ss_pred hhhhchhhhhhcCccchhccCcCHHH----hhhhcccch
Q psy2697 86 MKEEMPDLMKEEKPDLMKEEKPDLKE----ILSWKGVMK 120 (165)
Q Consensus 86 mkeempdlmkeekpdlmkeekpdlke----ilswkgvmk 120 (165)
-+++.-....+-+|....|..-.+.| -+||+.||+
T Consensus 48 ~~e~lL~~le~~kpEVi~ek~lTveELIE~SmSW~Ni~~ 86 (88)
T PF11491_consen 48 SKEELLEMLEEFKPEVIEEKELTVEELIESSMSWNNIMG 86 (88)
T ss_dssp SHHHH---HHHTTT-SS-------SS-------------
T ss_pred CHHHHHHHHHhcChhheeeccccHHHHHHHhccHhhhhc
Confidence 35566666777888887776655544 479998885
No 7
>KOG0525|consensus
Probab=9.07 E-value=88 Score=28.10 Aligned_cols=22 Identities=55% Similarity=0.963 Sum_probs=18.3
Q ss_pred hcCCchhccccc------cccccccccc
Q psy2697 130 EMPDLKEILPWK------GVMKDGRLDL 151 (165)
Q Consensus 130 empdlkeilpwk------gvmkdgrldl 151 (165)
|.-||+.|+||. .|.|.|||-.
T Consensus 270 evidlkti~pwd~d~v~~sv~ktgrlli 297 (362)
T KOG0525|consen 270 EVIDLKTIIPWDKDTVEESVQKTGRLLI 297 (362)
T ss_pred EEEeeecccCccHHHHHHHHHhhceEEE
Confidence 567999999995 6889999843
No 8
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=8.05 E-value=1.2e+02 Score=21.81 Aligned_cols=13 Identities=54% Similarity=0.923 Sum_probs=9.6
Q ss_pred Hhhhhcccchhhh
Q psy2697 111 EILSWKGVMKDER 123 (165)
Q Consensus 111 eilswkgvmkder 123 (165)
=-+||||..+.-|
T Consensus 38 L~lswKGalkelr 50 (65)
T COG5559 38 LKLSWKGALKELR 50 (65)
T ss_pred cceehhhhhhhhc
Confidence 3589999887544
No 9
>KOG3921|consensus
Probab=8.04 E-value=1.5e+02 Score=26.85 Aligned_cols=15 Identities=40% Similarity=0.835 Sum_probs=12.0
Q ss_pred CCCcccccccccccc
Q psy2697 17 KPDLNEILPWKGVMK 31 (165)
Q Consensus 17 kpdlneilpwkgvmk 31 (165)
++|.|+|+||.|-|.
T Consensus 19 ~i~y~~~fp~~~~~d 33 (360)
T KOG3921|consen 19 DIDYNERFPWEGAND 33 (360)
T ss_pred ccchhhhCCcccccc
Confidence 578899999998543
No 10
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=7.11 E-value=1.7e+02 Score=20.18 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=16.4
Q ss_pred CcchhhcCcchh------------hhccccchhhhhhhhh
Q psy2697 34 KPDLMKEGMPDL------------MQNERPDLMQNKRLDL 61 (165)
Q Consensus 34 kpdlmkegmpdl------------mqnerpdlmqnkrldl 61 (165)
+-|||+-|+|+- |-+..-...+|+|+..
T Consensus 6 k~dLi~lGf~~~tA~~IIrqAK~~lV~~G~~~Y~nkRlg~ 45 (59)
T PF11372_consen 6 KKDLIELGFSESTARDIIRQAKALLVQKGFSFYNNKRLGR 45 (59)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCcccCCccCc
Confidence 457777777752 3334445566666654
Done!