Query psy2697
Match_columns 165
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 22:54:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f40_A Hypothetical protein PF 16.9 30 0.001 25.3 0.1 30 92-121 61-94 (96)
2 3ktp_B Trinucleotide repeat-co 12.7 59 0.002 18.3 0.6 12 132-143 8-19 (22)
3 2okq_A Hypothetical protein YB 8.0 84 0.0029 23.9 0.1 18 115-132 107-124 (141)
4 3fcn_A AN alpha-helical protei 6.2 91 0.0031 23.5 -0.5 49 107-155 76-124 (164)
5 1igq_A Transcriptional repress 5.7 89 0.003 21.1 -0.8 20 32-51 2-21 (62)
6 1oey_J P40-PHOX, neutrophil cy 4.8 3.3E+02 0.011 19.9 1.8 26 117-142 64-92 (107)
7 3saf_A Exosome component 10; e 3.7 4.3E+02 0.015 21.6 1.8 31 8-40 3-33 (428)
8 2lqt_A Coiled-coil-helix-coile 3.5 2E+02 0.007 20.1 -0.3 23 114-136 50-72 (85)
9 3ubm_A COAT2, formyl-COA:oxala 3.3 3.1E+02 0.011 22.7 0.5 26 45-70 119-146 (456)
10 3rjs_A Dynein light chain moto 3.2 2.2E+02 0.0075 18.6 -0.3 24 30-53 1-24 (89)
No 1
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=16.88 E-value=30 Score=25.32 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=11.4
Q ss_pred hhhhhcCccchhccCcCHH----Hhhhhcccchh
Q psy2697 92 DLMKEEKPDLMKEEKPDLK----EILSWKGVMKD 121 (165)
Q Consensus 92 dlmkeekpdlmkeekpdlk----eilswkgvmkd 121 (165)
+|+.+-||....|+.-.+. +-+||+.||+.
T Consensus 61 ~lLeelkPEVi~ek~lTv~ELIe~SmSW~Nv~~~ 94 (96)
T 2f40_A 61 ELKEKLKGEVIEEKEITLQELIEGSLSWNNVLRS 94 (96)
T ss_dssp HHHHHTTTCSSCCCCCCCSSCC------------
T ss_pred HHHHHcChhhcccccccHHHHHHHhccHHHHhhc
Confidence 3445777777766655443 45799999874
No 2
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=12.69 E-value=59 Score=18.28 Aligned_cols=12 Identities=42% Similarity=1.196 Sum_probs=8.4
Q ss_pred CCchhccccccc
Q psy2697 132 PDLKEILPWKGV 143 (165)
Q Consensus 132 pdlkeilpwkgv 143 (165)
|.++--.||||+
T Consensus 8 Pef~pg~pwkG~ 19 (22)
T 3ktp_B 8 PEFHPGVPWKGL 19 (26)
T ss_pred cccccCCccccc
Confidence 556666788886
No 3
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=7.95 E-value=84 Score=23.86 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=14.1
Q ss_pred hcccchhhhhhhhhhhcC
Q psy2697 115 WKGVMKDERLDLMKEEMP 132 (165)
Q Consensus 115 wkgvmkderldlmkeemp 132 (165)
|.-||.|.|+.-+.++||
T Consensus 107 ~~kvm~DPRm~~~~~~mP 124 (141)
T 2okq_A 107 NQKMMSDPRMKEFGESMP 124 (141)
T ss_dssp HHHHHTCHHHHHTTSSCS
T ss_pred HHHhhcCccccccCCCCC
Confidence 467899999877766776
No 4
>3fcn_A AN alpha-helical protein of unknown function (PFA; DUF29 family protein, structural genomics; HET: MSE; 1.45A {Rhodospirillum rubrum atcc 11170}
Probab=6.20 E-value=91 Score=23.50 Aligned_cols=49 Identities=8% Similarity=0.130 Sum_probs=38.2
Q ss_pred cCHHHhhhhcccchhhhhhhhhhhcCCchhccccccccccccccchhhh
Q psy2697 107 PDLKEILSWKGVMKDERLDLMKEEMPDLKEILPWKGVMKDGRLDLMKEE 155 (165)
Q Consensus 107 pdlkeilswkgvmkderldlmkeempdlkeilpwkgvmkdgrldlmkee 155 (165)
|+-...-||.+-+...|..+-+---|.||..+++..+..++|....++-
T Consensus 76 pe~r~~~sW~~tI~~~R~~I~~~LsPSLk~yl~l~~~Y~~A~~~a~~et 124 (164)
T 3fcn_A 76 PEAPDRARWRSEVVSWHNLLLDTITPGMIDRIDIGVIWRRAVSEAKAAL 124 (164)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHCCGGGGGGCCHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4333346899999999988766668999999998888888887776654
No 5
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=5.66 E-value=89 Score=21.05 Aligned_cols=20 Identities=35% Similarity=0.704 Sum_probs=6.1
Q ss_pred ccCcchhhcCcchhhhcccc
Q psy2697 32 EEKPDLMKEGMPDLMQNERP 51 (165)
Q Consensus 32 eekpdlmkegmpdlmqnerp 51 (165)
++.||-+|.-+-...-++|+
T Consensus 2 e~DpdklKK~iv~V~~dgR~ 21 (62)
T 1igq_A 2 EPDPDKLKKAIVQVEHDERP 21 (62)
T ss_dssp -------CCCEEEEEETTEE
T ss_pred CCCcchhhCcEEEEEECChh
Confidence 44555555554444444444
No 6
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=4.84 E-value=3.3e+02 Score=19.93 Aligned_cols=26 Identities=35% Similarity=0.772 Sum_probs=19.5
Q ss_pred ccchhhhhhhhhhh---cCCchhcccccc
Q psy2697 117 GVMKDERLDLMKEE---MPDLKEILPWKG 142 (165)
Q Consensus 117 gvmkderldlmkee---mpdlkeilpwkg 142 (165)
-++.|+-+++|..+ .|.-|..+||+=
T Consensus 64 rilddeDv~lmi~~sr~~~s~k~~FPWeL 92 (107)
T 1oey_J 64 RLLSDEDVALMVRQARGLPSQKRLFPWKL 92 (107)
T ss_dssp ECCSHHHHHHHHHHCCCCCCTTCBCSSCE
T ss_pred EEcchHHHHHHHHHhhcCcccccccceeE
Confidence 35678888898876 566677899974
No 7
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=3.70 E-value=4.3e+02 Score=21.61 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=25.1
Q ss_pred cCcccccccCCCccccccccccccccCcchhhc
Q psy2697 8 EKPDLMKEEKPDLNEILPWKGVMKEEKPDLMKE 40 (165)
Q Consensus 8 ekpdlmkeekpdlneilpwkgvmkeekpdlmke 40 (165)
.||.+.-+.++|-.+ .||+-..++ ||.-++.
T Consensus 3 ~~pq~~f~~~~dn~~-~p~~p~~~~-kp~a~~~ 33 (428)
T 3saf_A 3 IRPQLKFREKIDNSN-TPFLPKIFI-KPNAQKP 33 (428)
T ss_dssp CCGGGGCSSCCCCSS-SCCCCCCCC-CTTCSSC
T ss_pred CCchhccCCCCCCCC-CCCCCccCC-CCcccCC
Confidence 478899999999776 799999876 8876654
No 8
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=3.53 E-value=2e+02 Score=20.12 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.6
Q ss_pred hhcccchhhhhhhhhhhcCCchh
Q psy2697 114 SWKGVMKDERLDLMKEEMPDLKE 136 (165)
Q Consensus 114 swkgvmkderldlmkeempdlke 136 (165)
.|..|+++.|..=++--||.+.|
T Consensus 50 ~W~~v~~eRRr~Gi~P~~P~~~e 72 (85)
T 2lqt_A 50 FWNSIVMQRRKNGVKPFMPTAAE 72 (85)
T ss_dssp HHHHHHHHHHTTCCSCSSCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCcCHHH
Confidence 58899999999888888888766
No 9
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A {Acetobacter aceti}
Probab=3.26 E-value=3.1e+02 Score=22.66 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=19.6
Q ss_pred hhhccccchhhhhhh--hhhhhcCccch
Q psy2697 45 LMQNERPDLMQNKRL--DLMKEENPDLM 70 (165)
Q Consensus 45 lmqnerpdlmqnkrl--dlmkeenpdlm 70 (165)
+++|.||..|..--| +-+++.||.|.
T Consensus 119 vvenfRPG~~erlGL~ye~L~~~NP~LI 146 (456)
T 3ubm_A 119 LLENFRPGAMERMGFTWEYLQQLNPRLI 146 (456)
T ss_dssp EEECCSTTHHHHTTCCHHHHHHHCTTCE
T ss_pred EEECCCccHHHHhCCCHHHHHHhCCCcE
Confidence 568999998876555 45788888875
No 10
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=3.23 E-value=2.2e+02 Score=18.62 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=13.3
Q ss_pred ccccCcchhhcCcchhhhccccch
Q psy2697 30 MKEEKPDLMKEGMPDLMQNERPDL 53 (165)
Q Consensus 30 mkeekpdlmkegmpdlmqnerpdl 53 (165)
|.+.|+......||+-||++--++
T Consensus 1 m~~~k~~i~~~dM~~emq~~a~~~ 24 (89)
T 3rjs_A 1 MADRKAVIKNADMPEDLQQDAIDC 24 (89)
T ss_dssp --CCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCCccEEEECCCCHHHHHHHHHH
Confidence 344455555667777777654443
Done!