RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2697
         (165 letters)



>gnl|CDD|218866 pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo).  This family
           consists of several bacterial Malate:quinone
           oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes
           part in the citric acid cycle. It oxidises L-malate to
           oxaloacetate and donates electrons to ubiquinone-1 and
           other artificial acceptors or, via the electron transfer
           chain, to oxygen. NAD is not an acceptor and the natural
           direct acceptor for the enzyme is most likely a quinone.
           The enzyme is therefore called malate:quinone
           oxidoreductase, abbreviated to Mqo. Mqo is a peripheral
           membrane protein and can be released from the membrane
           by addition of chelators.
          Length = 489

 Score = 29.2 bits (66), Expect = 1.0
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 1   MPDLMKEEKPDLMKEEKPDLNEILPWKGVMKEEKPDLMKE 40
           M +++++  PD MKE +P L E++P  G    E P+L +E
Sbjct: 439 MLEVLEKCFPDKMKEWEPKLKEMVPSYGKKLNEDPELYRE 478


>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
          Length = 438

 Score = 28.3 bits (63), Expect = 1.8
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 91  PDLMKEEKPDLMKEEKPDLKEIL--SWKGVMKDERLD 125
           P  + ++ PD  K+E   L+E+L  + +G +++  LD
Sbjct: 30  PLFIDKKHPDFGKKENKTLEELLATAIQGTLENTGLD 66


>gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and
           modification].
          Length = 975

 Score = 28.0 bits (62), Expect = 2.5
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 33  EKPDLMKEGMPDLMQNERPDLMQNKRLDLMKEENPDLMRE---------EKPDLMKNERP 83
           E  DL +E  P      R DL    R+D   + + D  RE         E PD  ++ R 
Sbjct: 46  ESKDLKQEQTPLGYIQVREDLYSKTRMDPGFQPDSDKKRELELNNTWDMEYPDSKRSSRW 105

Query: 84  DLMKEEMPD 92
           D M  E P 
Sbjct: 106 DEMGYEPPQ 114


>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional.
          Length = 316

 Score = 27.3 bits (61), Expect = 3.8
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 120 KDERLDLMKEEMPDLKEILPWKGVMKDGRL--DLMKEEMPDLKEIL 163
           K+E++++MK+ +   K IL  +GV  D ++   L+K+  PD +  +
Sbjct: 162 KEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTI 207


>gnl|CDD|215313 PLN02575, PLN02575, haloacid dehalogenase-like hydrolase.
          Length = 381

 Score = 26.8 bits (59), Expect = 7.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 20  LNEILPWKGVMKEEKPDLMKEGMPDLMQNE---RPDLMQNKRLDLMKEE 65
           L  I  W+GV+ E+ PDL  +    L Q E    P     +R++ MK E
Sbjct: 132 LGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNE 180


>gnl|CDD|148694 pfam07237, DUF1428, Protein of unknown function (DUF1428).  This
           family consists of several hypothetical bacterial and
           one archaeal sequence of around 120 residues in length.
           The function of this family is unknown.
          Length = 103

 Score = 25.6 bits (57), Expect = 7.9
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 115 WKGVMKDERLDLMKEEMP 132
              +M D R+  M  EMP
Sbjct: 82  NAKMMADPRMKEMGNEMP 99


>gnl|CDD|130387 TIGR01320, mal_quin_oxido, malate:quinone-oxidoreductase.  This
           membrane-associated enzyme is an alternative to the
           better-known NAD-dependent malate dehydrogenase as part
           of the TCA cycle. The reduction of a quinone rather than
           NAD+ makes the reaction essentially irreversible in the
           direction of malate oxidation to oxaloacetate. Both
           forms of malate dehydrogenase are active in E. coli;
           disruption of this form causes less phenotypic change.
           In some bacteria, this form is the only or the more
           important malate dehydrogenase [Energy metabolism, TCA
           cycle].
          Length = 483

 Score = 26.3 bits (58), Expect = 9.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 1   MPDLMKEEKPDLMKEEKPDLNEILPWKGVMKEEKPDLMKE 40
           M DL++   P+  +   P L E++P  G     +P L  E
Sbjct: 435 MLDLLERCFPERYQSWLPKLKEMVPSYGKKLSSEPALFDE 474


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.311    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,165,510
Number of extensions: 916875
Number of successful extensions: 897
Number of sequences better than 10.0: 1
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 72
Length of query: 165
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 75
Effective length of database: 6,945,742
Effective search space: 520930650
Effective search space used: 520930650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.0 bits)