RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2697
         (165 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.029
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 27/107 (25%)

Query: 38   MKEGMPDLMQN--------ERPD--LMQNKRLDLMK--EENPDLMREEKPDLMKNERPDL 85
            M  GM DL +          R D          ++     NP             E+   
Sbjct: 1631 M--GM-DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP----VNLTIHFGGEKGKR 1683

Query: 86   MKEEMPDLMKEEKPDLMKEEKPDLKEI------LSWKGVMKDERLDL 126
            ++E    ++ E   D   + +   KEI       +++   +   L  
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSA 1728


>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
           2.00A {Oryza sativa} PDB: 3ale_A
          Length = 387

 Score = 27.5 bits (61), Expect = 2.5
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 88  EEMPDLMKEE-KPDLMKEEKPDLKEILSWKGVMKDERLDLMKEEMPDLKEILPWKGVMKD 146
           EE+PD        D +   K   K I    GV +   L   +E +    E +       D
Sbjct: 28  EEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRR-YLHHTEEMLSAHPEFVDRDAPSLD 86

Query: 147 GRLDLMKEEMPDL 159
            RLD+  + +P+L
Sbjct: 87  ARLDIAADAVPEL 99


>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
           linked comple supercoiling; HET: DNA PTR TSP; 2.48A
           {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
           2rgr_A*
          Length = 757

 Score = 26.9 bits (59), Expect = 4.2
 Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 6/135 (4%)

Query: 7   EEKPDLMKEEKPDLNEILPWKGVMKEEKPDLMKEGMPDLMQNERPDLMQNKRLDLMKEEN 66
           E++  +  + +  + + L   G  +  K      G P+    E+ + ++    D   EE+
Sbjct: 615 EKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEES 674

Query: 67  PDLMREEKPDLMKNERPD---LMKEEMPDLMKEEKPDLMKEEKPDLKEILSWKGVMKDER 123
                E   +  +        L+   +  L KE    L+K+++    E+ +        +
Sbjct: 675 SHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLK--LSAK 732

Query: 124 LDLMKEEMPDLKEIL 138
            D+   ++   +   
Sbjct: 733 -DIWNTDLKAFEVGY 746


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 5.4
 Identities = 8/57 (14%), Positives = 20/57 (35%)

Query: 26  WKGVMKEEKPDLMKEGMPDLMQNERPDLMQNKRLDLMKEENPDLMREEKPDLMKNER 82
           W  +     P+ + E +  L+    P+           +     ++ E   L+K++ 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242


>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
           protein structure initiative, PSI, joint center for
           structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
           SCOP: a.24.13.1 c.37.1.10
          Length = 306

 Score = 26.0 bits (58), Expect = 6.9
 Identities = 4/27 (14%), Positives = 13/27 (48%)

Query: 81  ERPDLMKEEMPDLMKEEKPDLMKEEKP 107
           +  + +KE + +++  +    +  E P
Sbjct: 78  DALESLKEIILEILNFDTKLNVPPEPP 104


>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme,
           acyltransferase, acetylation; HET: COA PG4; 1.53A
           {Escherichia coli} SCOP: c.7.1.1 PDB: 1h17_A* 1h18_A*
           1mzo_A* 2pfl_A 3pfl_A 1cm5_A 1qhm_A
          Length = 759

 Score = 26.1 bits (57), Expect = 7.4
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 115 WKGVMKDERLDLMKEEM-PDLKEILP-WKGVMKDGRLDLMKEEM 156
               M +        E+ P +K+I   ++     G  D+   ++
Sbjct: 113 GGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDI 156


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,774,854
Number of extensions: 177280
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 68
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.4 bits)