RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2697
         (165 letters)



>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate
           synthase {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 287

 Score = 24.9 bits (54), Expect = 5.2
 Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 8/107 (7%)

Query: 10  PDLMKEEKPDLNEILPWKGVMKEEKPDLMKEGMPDLMQNERPDLMQNKRLDLMKEENPDL 69
            ++++  K DL  I+  KG        + + G    ++ E   L +      M     + 
Sbjct: 80  REILEAVKSDLEGIVARKGTALNCGSGIKELGDIKTLEGEGLSLAE------MVSRIEED 133

Query: 70  MREEKPD--LMKNERPDLMKEEMPDLMKEEKPDLMKEEKPDLKEILS 114
           ++    D  ++ N           +          +    D KE  S
Sbjct: 134 IKSFADDETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYAS 180


>d2okqa1 d.58.4.18 (A:1-117) Hypothetical protein YbaA {Shigella
           flexneri [TaxId: 623]}
          Length = 117

 Score = 24.2 bits (53), Expect = 5.9
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 115 WKGVMKDERLDLMKEEMP 132
            + +M D R+    E MP
Sbjct: 83  NQKMMSDPRMKEFGESMP 100


>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
           synthase {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 410

 Score = 24.4 bits (53), Expect = 9.5
 Identities = 4/21 (19%), Positives = 10/21 (47%)

Query: 9   KPDLMKEEKPDLNEILPWKGV 29
           + DL +  K  ++ + P   +
Sbjct: 157 EYDLQQRLKAKMSLVKPLPSI 177


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 680,746
Number of extensions: 35630
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 37
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (22.8 bits)