BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2699
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KSG|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 1
pdb|3T5G|B Chain B, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
pdb|3T5I|B Chain B, Structure Of Fully Modified Farnesylated Rheb Peptide In
Complex With Pde6d
pdb|3T5I|A Chain A, Structure Of Fully Modified Farnesylated Rheb Peptide In
Complex With Pde6d
pdb|3T5I|C Chain C, Structure Of Fully Modified Farnesylated Rheb Peptide In
Complex With Pde6d
pdb|3T5I|D Chain D, Structure Of Fully Modified Farnesylated Rheb Peptide In
Complex With Pde6d
Length = 152
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 105/138 (76%), Gaps = 2/138 (1%)
Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
A+ + +IL GF++NWMNLRD +TG++LWQG +DLS+ EHEARVPKKIL C+AVSRE
Sbjct: 5 AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 64
Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
LNFSS + ++ +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 65 LNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 124
Query: 293 L--NNTTEPPPLHDWLLV 308
L N E D LLV
Sbjct: 125 LTGNVIIETKFFDDDLLV 142
>pdb|1KSH|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 152
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 105/138 (76%), Gaps = 2/138 (1%)
Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
A+ + +IL GF++NWMNLRD +TG++LWQG +DLS+ EHEARVPKKIL C+AVSRE
Sbjct: 5 AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 64
Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
LNFSS + ++ +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 65 LNFSSTEQMEKFRLEQKVYFKGQXLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 124
Query: 293 L--NNTTEPPPLHDWLLV 308
L N E D LLV
Sbjct: 125 LTGNVIIETKFFDDDLLV 142
>pdb|1KSJ|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 152
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 101/138 (73%), Gaps = 2/138 (1%)
Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
A+ + +IL GF++NW NLRD +TG++LWQG +DLS+ EHEARVPKKIL C+AVSRE
Sbjct: 5 AKDERAREILRGFKLNWXNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 64
Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
LNFSS + + +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQ PA V
Sbjct: 65 LNFSSTEQXEKFRLEQKVYFKGQXLEEWFFEFGFVIPNSTNTWQSLIEAAPESQXXPASV 124
Query: 293 L--NNTTEPPPLHDWLLV 308
L N E D LLV
Sbjct: 125 LTGNVIIETKFFDDDLLV 142
>pdb|3RBQ|A Chain A, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|B Chain B, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|C Chain C, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|D Chain D, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|E Chain E, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|F Chain F, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
Length = 195
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 223 ILNCRAVSRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIES 281
L R V + F+ +P+ ++ ++ F+N++L+ ++F FGF IP+S NT + I +
Sbjct: 92 FLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDF 151
Query: 282 APESQMMPAKVLNNTTE 298
P S+ + ++++ + E
Sbjct: 152 PPLSEELISEMIRHPYE 168
>pdb|4GOJ|C Chain C, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|D Chain D, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOK|G Chain G, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|C Chain C, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 240
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 223 ILNCRAVSRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIES 281
L R V + F+ +P+ ++ ++ F+N++L+ ++F FGF IP+S NT + I +
Sbjct: 137 FLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDF 196
Query: 282 APESQMMPAKVLNNTTE 298
P S+ + ++++ + E
Sbjct: 197 PPLSEELISEMIRHPYE 213
>pdb|3GQQ|A Chain A, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|B Chain B, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|C Chain C, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|D Chain D, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|E Chain E, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|F Chain F, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
Length = 195
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 223 ILNCRAVSRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIES 281
L R V + F+ +P+ + ++ F+N++L+ ++F FGF IP+S NT + I +
Sbjct: 92 FLRLRQVGATVEFTVGDKPVNNFRXIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDF 151
Query: 282 APESQMMPAKVLNNTTE 298
P S+ + ++ + + E
Sbjct: 152 PPLSEELISEXIRHPYE 168
>pdb|4H0Y|A Chain A, Crystal Structure Of Nad+-ia(e380s)-actin Complex
Length = 418
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 88 TVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKYPKEKEGKAKLRNWVFKEKL 141
T+EK+ L ++ + ++ S R + QI+ P+EKE K LRN + K K+
Sbjct: 38 TLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYK-NLRNAISKNKI 90
>pdb|4H0V|A Chain A, Crystal Structure Of Nad+-ia(e378s)-actin Complex
Length = 418
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 88 TVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKYPKEKEGKAKLRNWVFKEKL 141
T+EK+ L ++ + ++ S R + QI+ P+EKE K LRN + K K+
Sbjct: 38 TLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYK-NLRNAISKNKI 90
>pdb|4H0X|A Chain A, Crystal Structure Of Nad+-ia(e380a)-actin Complex
Length = 418
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 88 TVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKYPKEKEGKAKLRNWVFKEKL 141
T+EK+ L ++ + ++ S R + QI+ P+EKE K LRN + K K+
Sbjct: 38 TLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYK-NLRNAISKNKI 90
>pdb|4GY2|A Chain A, Crystal Structure Of Apo-ia-actin Complex
pdb|4H03|A Chain A, Crystal Structure Of Nad+-ia-actin Complex
pdb|4H0T|A Chain A, Crystal Structure Of Ia-adpr-actin Complex
Length = 418
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 88 TVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKYPKEKEGKAKLRNWVFKEKL 141
T+EK+ L ++ + ++ S R + QI+ P+EKE K LRN + K K+
Sbjct: 38 TLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYK-NLRNAISKNKI 90
>pdb|1GIQ|A Chain A, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadh
pdb|1GIQ|B Chain B, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadh
pdb|1GIR|A Chain A, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadph
pdb|3BUZ|A Chain A, Crystal Structure Of Ia-Btad-Actin Complex
Length = 413
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 88 TVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKYPKEKEGKAKLRNWVFKEKL 141
T+EK+ L ++ + ++ S R + QI+ P+EKE K LRN + K K+
Sbjct: 33 TLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYK-NLRNAISKNKI 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,024,969
Number of Sequences: 62578
Number of extensions: 485426
Number of successful extensions: 923
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 14
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)