Query psy2699
Match_columns 398
No_of_seqs 106 out of 125
Neff 2.1
Searched_HMMs 46136
Date Fri Aug 16 22:56:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05351 GMP_PDE_delta: GMP-PD 100.0 1.5E-63 3.2E-68 438.3 12.0 138 177-314 1-153 (157)
2 KOG4038|consensus 100.0 3.8E-55 8.3E-60 380.0 1.8 143 174-316 4-148 (150)
3 KOG4037|consensus 100.0 6.6E-50 1.4E-54 365.7 3.4 133 181-313 82-234 (240)
4 PF01011 PQQ: PQQ enzyme repea 51.3 24 0.00051 24.0 3.3 20 189-208 11-30 (38)
5 smart00564 PQQ beta-propeller 42.4 32 0.00068 21.7 2.7 17 188-204 16-32 (33)
6 PF02115 Rho_GDI: RHO protein 39.7 41 0.00089 31.8 4.1 74 230-308 110-187 (200)
7 PLN02667 inositol polyphosphat 33.4 1.2E+02 0.0025 29.8 6.2 91 111-208 41-153 (286)
8 PF14796 AP3B1_C: Clathrin-ada 26.4 44 0.00095 30.2 1.9 47 215-261 71-121 (145)
9 PF04790 Sarcoglycan_1: Sarcog 21.2 1.7E+02 0.0036 28.6 4.8 56 186-241 116-190 (264)
10 PF05643 DUF799: Putative bact 20.9 77 0.0017 30.5 2.5 18 189-206 133-150 (215)
11 PF13590 DUF4136: Domain of un 20.4 98 0.0021 25.3 2.7 19 188-206 105-123 (151)
12 PF13036 DUF3897: Protein of u 20.1 89 0.0019 27.4 2.5 48 157-207 132-179 (180)
13 COG2451 Ribosomal protein L35A 20.0 1.6E+02 0.0035 25.9 4.0 33 167-203 29-62 (100)
No 1
>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3.1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.
Probab=100.00 E-value=1.5e-63 Score=438.30 Aligned_cols=138 Identities=33% Similarity=0.592 Sum_probs=125.4
Q ss_pred hHHhhhcCeeeceEEEEECCCCcEEEEecCCCCC----------CccccccccCcccccccceeeEEEEc-ccccccCce
Q psy2699 177 KIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSL----------ADSEHEARVPKKILNCRAVSRELNFS-SVQPIQMLK 245 (398)
Q Consensus 177 ~a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~----------Pe~E~eARFPpkFLrcKtVgrtIeFS-GdEPI~NFR 245 (398)
+++++++||+|+||+|||+|||+||||+++|.+. +..++.+||||+||+||+|||+|+|| |++||+|||
T Consensus 1 ~~~~n~ygi~f~~f~iRD~dtg~vlfe~~~~~~~~~~~~~~~~~~~r~v~y~fp~~~L~~k~V~~~i~Fsvg~~pv~nFR 80 (157)
T PF05351_consen 1 KPEANIYGIEFTRFKIRDADTGKVLFEINKDPSDVEQLEPEDPNAGREVRYRFPPKFLKLKTVGREIEFSVGDEPVNNFR 80 (157)
T ss_dssp -HHHHCCHEEEEEEEEEETTTTEEEEEEESSTTS--STT-----TTTEEEEEEEGGGGG-SEEEEEEEEEE-SS-ECCEE
T ss_pred ChhhceeCcEEEEEEEEECCCCcEEEEecCCCCchhhcccccCCCceEEEEEcCHHHhcchhheEEEEEEECceeccccE
Confidence 4789999999999999999999999999999876 55678899999999999999999999 899999999
Q ss_pred eEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCC----CCCCccCCEEEEEEeee
Q psy2699 246 LKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT----EPPPLHDWLLVGQIKFK 314 (398)
Q Consensus 246 MIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNv----ETkFFDGD~LIm~sk~~ 314 (398)
|||||||||+|||+|||+||||||||+||||||||+|++++|||++||+||+ ||.|||||+||||||+.
T Consensus 81 mierhyF~~~llk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi~gp~et~sdSfyfv~~~Limhnka~ 153 (157)
T PF05351_consen 81 MIERHYFRDQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMISGPYETKSDSFYFVDDKLIMHNKAR 153 (157)
T ss_dssp EEEEEEETTEEEEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHHCTTTTEEEEEEEEETTEEEEEEEEE
T ss_pred eeEeeeecCceeeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHHcCCCcceEEEEEEeCCEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999977 66799999999999985
No 2
>KOG4038|consensus
Probab=100.00 E-value=3.8e-55 Score=379.95 Aligned_cols=143 Identities=58% Similarity=1.006 Sum_probs=139.8
Q ss_pred cchhHHhhhcCeeeceEEEEECCCCcEEEEecCCCCCCccccccccCcccccccceeeEEEEcccccccCceeEEEEeeC
Q psy2699 174 QKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFK 253 (398)
Q Consensus 174 ~~~~a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~Pe~E~eARFPpkFLrcKtVgrtIeFSGdEPI~NFRMIERHYFR 253 (398)
..++|++|+.||++|||++||+|||+||||.++|.+.|+.||+||+|+++|+||+|+|+|+||+.+.|++|||.||+||+
T Consensus 4 ~~e~a~~il~gfklnwmnlrdaetgkilwq~ted~s~p~~ehearvpkkilkcravsreinfss~e~mekfrleqkvyfk 83 (150)
T KOG4038|consen 4 DQEAADRILKGFKLNWMNLRDAETGKILWQETEDFSAPDQEHEARVPKKILKCRAVSREINFSSIESMEKFRLEQKVYFK 83 (150)
T ss_pred hHHHHHHHHhccceeeeEeecccccceeeecccccCCCcchhhhcccHHHHhhHhhhhhcccchHHHHHhhhhhheeeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCC--CCCCccCCEEEEEEeeeee
Q psy2699 254 NRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT--EPPPLHDWLLVGQIKFKSW 316 (398)
Q Consensus 254 dqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNv--ETkFFDGD~LIm~sk~~~~ 316 (398)
|+++|+|.|+|||||||||||||+++|+||+||||||.+|+||+ ||+|||+|.||.++.|.-+
T Consensus 84 g~i~eewffefgfvipnstntwqs~ieaapesqmmpasvl~gnv~iet~fyd~dllvstsrvrly 148 (150)
T KOG4038|consen 84 GRIMEEWFFEFGFVIPNSTNTWQSTIEAAPESQMMPASVLNGNVTIETSFYDNDLLVSTSRVRLY 148 (150)
T ss_pred ceeHHHhhhhhceeccCCcchHHHHHhhCchhccCChhhccCceEEEEEEecCCEEEEeeEEEEE
Confidence 99999999999999999999999999999999999999999999 9999999999999999765
No 3
>KOG4037|consensus
Probab=100.00 E-value=6.6e-50 Score=365.73 Aligned_cols=133 Identities=26% Similarity=0.462 Sum_probs=123.6
Q ss_pred hhcCeeeceEEEEECCCCcEEEEecCCCCCCc----------cccccc-----cCcccccccceeeEEEEc-ccccccCc
Q psy2699 181 ILNGFQVNWMNLRDVDTGELLWQGNDDLSLAD----------SEHEAR-----VPKKILNCRAVSRELNFS-SVQPIQML 244 (398)
Q Consensus 181 Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~Pe----------~E~eAR-----FPpkFLrcKtVgrtIeFS-GdEPI~NF 244 (398)
=.+.|+|++|+|||+|||.|||||+|++...+ .+.++| |+|.||++|+||+||+|+ ||+||+||
T Consensus 82 Nvy~IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~a~ae~lspnagRyVRYqFtPaFL~LktVGATVEFtVGd~PvnnF 161 (240)
T KOG4037|consen 82 NVYKIDFTRFKIRDLDSGTVLFEIAKPPVETEERLPANAEDLSPNAGRYVRYQFTPAFLRLKTVGATVEFTVGDKPVNNF 161 (240)
T ss_pred ceEEeeeEEEEEeeccCCcEEEEecCCCCcchhhcchhhhccCCcccceEEEeechhHeeeeecccEEEEEeCCeecchh
Confidence 45789999999999999999999999874321 233455 999999999999999999 99999999
Q ss_pred eeEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCCCCC----CccCCEEEEEEee
Q psy2699 245 KLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPP----PLHDWLLVGQIKF 313 (398)
Q Consensus 245 RMIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNvETk----FFDGD~LIm~sk~ 313 (398)
||||||||||+|||+|||+||||||+|+||||||||+|++++.|.+|||++|.||+ ||++|+||||+|-
T Consensus 162 RMIERHfFrdrLLK~FDFeFGFC~P~SkNtcEHIYeFP~Ls~~L~~eMI~~P~ETrSDSFYFV~nrLVMHNKA 234 (240)
T KOG4037|consen 162 RMIERHFFRDRLLKSFDFEFGFCIPSSKNTCEHIYEFPPLSEELMAEMINNPNETRSDSFYFVENRLVMHNKA 234 (240)
T ss_pred hHHHHHHHHHHHHhhccceeeEeecCCCCcchhhhcCCCCCHHHHHHHhcCccccCCcceEEEccEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999997 9999999999985
No 4
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=51.28 E-value=24 Score=24.01 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=15.9
Q ss_pred eEEEEECCCCcEEEEecCCC
Q psy2699 189 WMNLRDVDTGELLWQGNDDL 208 (398)
Q Consensus 189 rFkIRDaDTGkVLFEi~kD~ 208 (398)
.+.-.|++||+++|+.....
T Consensus 11 ~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 11 YLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEEETTTTSEEEEEESSS
T ss_pred EEEEEECCCCCEEEeeeCCC
Confidence 45668999999999986543
No 5
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=42.42 E-value=32 Score=21.72 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.2
Q ss_pred ceEEEEECCCCcEEEEe
Q psy2699 188 NWMNLRDVDTGELLWQG 204 (398)
Q Consensus 188 nrFkIRDaDTGkVLFEi 204 (398)
..+..-|++||+++|+.
T Consensus 16 g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 16 GTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEEcccCcEEEEc
Confidence 46777889999999985
No 6
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=39.66 E-value=41 Score=31.76 Aligned_cols=74 Identities=16% Similarity=0.073 Sum_probs=50.4
Q ss_pred eeEEEEc-ccccccCceeEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhh-hcCCC--CCCCccCC
Q psy2699 230 SRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV-LNNTT--EPPPLHDW 305 (398)
Q Consensus 230 grtIeFS-GdEPI~NFRMIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEm-LSGNv--ETkFFDGD 305 (398)
.-+|.|. ..++|.++|-+|.++=.|-.+..=.+..|=.-|+... +++.+|++ ..|.-| ..|.+ -++|.|+|
T Consensus 110 ~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~---y~~~~p~e--eaPsG~laRG~Y~aks~f~DdD 184 (200)
T PF02115_consen 110 RLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEP---YEKTFPEE--EAPSGMLARGSYTAKSKFVDDD 184 (200)
T ss_dssp EEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSE---EEEEEEEE--E--BSTTT-EEEEEEEEEEETT
T ss_pred EEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcc---eEEeCcCc--cCCCceeEeeeeeEEEEEEeCC
Confidence 3478888 8889999999999999999999999999988887544 66666654 233222 12444 66799988
Q ss_pred EEE
Q psy2699 306 LLV 308 (398)
Q Consensus 306 ~LI 308 (398)
.-+
T Consensus 185 ~~~ 187 (200)
T PF02115_consen 185 KNV 187 (200)
T ss_dssp SSE
T ss_pred CcE
Confidence 743
No 7
>PLN02667 inositol polyphosphate multikinase
Probab=33.36 E-value=1.2e+02 Score=29.84 Aligned_cols=91 Identities=21% Similarity=0.354 Sum_probs=62.5
Q ss_pred ccchhhhhhhcCcccchhhhhhhhhhhh------hcccccceecccccccccccCCeeEEEEEEEe------eeccchhH
Q psy2699 111 RGEKFFTQIQKYPKEKEGKAKLRNWVFK------EKLSNRTFFAGTRDLTETTESPAIMTSVSVKL------TDAQKAKI 178 (398)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~a 178 (398)
|--+|++++++-+.. .+.|+.|+=+ ...++..-|-...|||..-..|.||- +|+ .++.+++.
T Consensus 41 rE~~FY~~~~~~~~~---~~~L~~~~P~y~G~~~~~~~~~~~~i~LeDLt~g~~~PcVlD---lKmG~rt~~~~as~eK~ 114 (286)
T PLN02667 41 REAAFYESFSSDTRV---PDHIRRFFPVFHGTQLVEASDGSGLLVLEDLLAGYTKPCVMD---VKMGSRTWYPEASEEYI 114 (286)
T ss_pred HHHHHHHHHhccccc---hHHHHhhCcccceeEeeccCCCceeEEehHHhcCCCCCeEEE---EEeccEecCCCCCHHHH
Confidence 444688888854322 4678888743 12245556778889999999999984 454 34555555
Q ss_pred Hhh----------hcCeeeceEEEEECCCCcEEEEecCCC
Q psy2699 179 DDI----------LNGFQVNWMNLRDVDTGELLWQGNDDL 208 (398)
Q Consensus 179 ~~I----------l~GFkFnrFkIRDaDTGkVLFEi~kD~ 208 (398)
++. .-||.+..|++.+.+++. .|..++++
T Consensus 115 ~r~~~k~~~tTs~slGfRi~Gmkvy~~~~~~-~~~~dK~~ 153 (286)
T PLN02667 115 QKCLKKDRETTTVSLGFRVSGFKVYDHKESE-FWKAERKL 153 (286)
T ss_pred HHHHhhccccccccccEEEEEeEEEecCCCe-eEEechHH
Confidence 442 569999999999998775 55565653
No 8
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=26.36 E-value=44 Score=30.22 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=38.5
Q ss_pred cccccCcc--cccccceeeEEEEc--ccccccCceeEEEEeeCCccceeee
Q psy2699 215 HEARVPKK--ILNCRAVSRELNFS--SVQPIQMLKLKQKVLFKNRVLEEWN 261 (398)
Q Consensus 215 ~eARFPpk--FLrcKtVgrtIeFS--GdEPI~NFRMIERHYFRdqLLKsFD 261 (398)
.++||+++ ...-+-|+-+|.|+ |+++|++.++.++.+=.|..|++|+
T Consensus 71 v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~ 121 (145)
T PF14796_consen 71 VEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFP 121 (145)
T ss_pred EEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccC
Confidence 47778764 44556688899999 9999999999999998888887764
No 9
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=21.18 E-value=1.7e+02 Score=28.60 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=36.9
Q ss_pred eeceEEEEECCCCcEEEEecCCCC----------CCcc---cc-----ccc-cCcccccccceeeEEEEcccccc
Q psy2699 186 QVNWMNLRDVDTGELLWQGNDDLS----------LADS---EH-----EAR-VPKKILNCRAVSRELNFSSVQPI 241 (398)
Q Consensus 186 kFnrFkIRDaDTGkVLFEi~kD~s----------~Pe~---E~-----eAR-FPpkFLrcKtVgrtIeFSGdEPI 241 (398)
..+.|.++|+++|++||-.+.|.. .|+- ++ -.| =|-+=|++.+.++++...|.|-|
T Consensus 116 ~~~~F~V~d~~~g~~lFsad~~~v~v~~~~lrv~~~~G~l~~~~v~T~~Irs~~~~~L~leS~trsL~~~a~egV 190 (264)
T PF04790_consen 116 QSNRFEVKDPRDGKTLFSADRPEVVVGAEKLRVTGPEGALFEKSVQTPRIRSPPNEDLRLESPTRSLSMRAPEGV 190 (264)
T ss_pred ecCeEEEEcCCCCceEEEecCCceEEeeeeEEecCCccEEEeeeEEeccccCCCCcccccccCCcEEEEECCCCe
Confidence 457899999999999998877641 1221 11 111 23355888888887777776654
No 10
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=20.92 E-value=77 Score=30.55 Aligned_cols=18 Identities=39% Similarity=0.772 Sum_probs=15.7
Q ss_pred eEEEEECCCCcEEEEecC
Q psy2699 189 WMNLRDVDTGELLWQGND 206 (398)
Q Consensus 189 rFkIRDaDTGkVLFEi~k 206 (398)
..+|.|..||++||+.+.
T Consensus 133 ~~~Lvd~rTG~~LW~gsa 150 (215)
T PF05643_consen 133 EAKLVDLRTGKVLWSGSA 150 (215)
T ss_pred EEEEEECCCCCEEeccce
Confidence 578999999999998754
No 11
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=20.41 E-value=98 Score=25.28 Aligned_cols=19 Identities=21% Similarity=0.615 Sum_probs=16.1
Q ss_pred ceEEEEECCCCcEEEEecC
Q psy2699 188 NWMNLRDVDTGELLWQGND 206 (398)
Q Consensus 188 nrFkIRDaDTGkVLFEi~k 206 (398)
.-+.|.|+.|++++|+..-
T Consensus 105 L~i~i~D~~~~~~vW~g~a 123 (151)
T PF13590_consen 105 LVIDIIDAKTNKVVWRGTA 123 (151)
T ss_pred EEEEEEeCCCCCEEEEEEE
Confidence 4578899999999998865
No 12
>PF13036 DUF3897: Protein of unknown function (DUF3897)
Probab=20.11 E-value=89 Score=27.36 Aligned_cols=48 Identities=21% Similarity=0.410 Sum_probs=28.6
Q ss_pred ccCCeeEEEEEEEeeeccchhHHhhhcCeeeceEEEEECCCCcEEEEecCC
Q psy2699 157 TESPAIMTSVSVKLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDD 207 (398)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD 207 (398)
...|-.|-+-+|.-........+..-|.| .|.|-|..||.++|+-.++
T Consensus 132 ~~gady~L~G~I~~~~~~~~~~~~~~y~~---~l~L~d~~tg~ivW~~~~~ 179 (180)
T PF13036_consen 132 QLGADYMLSGKISSIVKRNGGKQQVYYQF---TLQLVDLETGEIVWSGEKE 179 (180)
T ss_pred ccCCCEEEEEEEEEeEeecCCceeEEEEE---EEEEEEcCCCcEEeccccc
Confidence 33454444444433333333444455554 4789999999999987553
No 13
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=20.02 E-value=1.6e+02 Score=25.89 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=27.4
Q ss_pred EEEee-eccchhHHhhhcCeeeceEEEEECCCCcEEEE
Q psy2699 167 SVKLT-DAQKAKIDDILNGFQVNWMNLRDVDTGELLWQ 203 (398)
Q Consensus 167 ~~~~~-~~~~~~a~~Il~GFkFnrFkIRDaDTGkVLFE 203 (398)
-||++ ..++++|+..+-+ ...-++.++|+|+|-
T Consensus 29 liKi~gv~s~~eA~~y~gk----~v~yk~~~~G~Vi~G 62 (100)
T COG2451 29 LIKIEGVDSPEEAQFYLGK----RVCYKYRSSGRVIKG 62 (100)
T ss_pred EEEEecCCCHHHHHhhhcc----EEEEEeCCCCcEEEE
Confidence 47888 7888889998887 566788899999994
Done!