Query psy2699
Match_columns 398
No_of_seqs 106 out of 125
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 22:56:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5g_B Retinal ROD rhodopsin-s 100.0 3.8E-66 1.3E-70 452.6 12.0 144 174-317 6-151 (152)
2 4goj_C Protein UNC-119 homolog 100.0 3E-55 1E-59 404.8 10.7 137 178-314 79-233 (240)
3 3gqq_A Protein UNC-119 homolog 100.0 1.5E-54 5E-59 391.1 11.0 137 178-314 34-188 (195)
4 1kmt_A RHO GDP-dissociation in 50.4 31 0.001 29.7 6.0 69 229-306 47-123 (141)
5 4day_C Fanconi anemia group M 42.8 8.8 0.0003 27.4 1.2 19 255-273 11-29 (37)
6 1ds6_B RHO GDP-dissociation in 34.3 65 0.0022 28.8 5.7 68 230-306 87-162 (180)
7 1doa_B RHO GDI 1, protein (GDP 30.4 78 0.0027 29.3 5.7 72 230-306 126-201 (219)
8 2h4p_B MENT, heterochromatin-a 20.4 66 0.0023 21.0 2.4 15 190-204 13-27 (34)
9 2ko4_A Mediator of RNA polymer 20.3 12 0.00043 30.3 -1.4 26 268-294 32-57 (81)
10 1hle_B Horse leukocyte elastas 19.8 71 0.0024 20.4 2.4 15 190-204 12-26 (31)
No 1
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=100.00 E-value=3.8e-66 Score=452.63 Aligned_cols=144 Identities=58% Similarity=0.995 Sum_probs=140.2
Q ss_pred cchhHHhhhcCeeeceEEEEECCCCcEEEEecCCCCCCccccccccCcccccccceeeEEEEcccccccCceeEEEEeeC
Q psy2699 174 QKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFK 253 (398)
Q Consensus 174 ~~~~a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~Pe~E~eARFPpkFLrcKtVgrtIeFSGdEPI~NFRMIERHYFR 253 (398)
+.+|+++|++||+++||+|||+|||+||||+++|++.|+.|++|||||+||+||+|||+|+||+++||+|||||||||||
T Consensus 6 ~~~~~~~i~~Gfk~~~m~iRD~dtG~vLwe~~kd~s~~~~e~~aRfp~~~L~~~~V~~~i~Fs~~epi~nFRmierhyf~ 85 (152)
T 3t5g_B 6 KDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVYFK 85 (152)
T ss_dssp CHHHHHHHHHHEEEEEEEEEETTTCCEEEEECSCTTCTTSEEEEEECGGGGGCSEEEEEEEEEESSCEEEEEEEEEEEET
T ss_pred cchHHHHHhcCceEEEEEEEEcCCCcEEEEecCCCCCcccccceecCHHHhcchhheEEEEEeccccccccEEEEEEEEc
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCC--CCCCccCCEEEEEEeeeeee
Q psy2699 254 NRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT--EPPPLHDWLLVGQIKFKSWK 317 (398)
Q Consensus 254 dqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNv--ETkFFDGD~LIm~sk~~~~~ 317 (398)
|+|||+|||+||||||||+||||||||+||++|||||++||||+ ||+|||||+||.+++|.-+-
T Consensus 86 ~~lle~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa~~lsGnv~IeT~f~d~d~li~~s~vRifY 151 (152)
T 3t5g_B 86 GQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFY 151 (152)
T ss_dssp TEEEEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCHHHHTTTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CceeeeEeeeeeeEcCCCCcccceEEEcCCccccCCHhHcCCcEEEEEEEecCCEEEEEeEEEEEE
Confidence 99999999999999999999999999999999999999999999 99999999999999997653
No 2
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=100.00 E-value=3e-55 Score=404.80 Aligned_cols=137 Identities=23% Similarity=0.400 Sum_probs=121.0
Q ss_pred HHhhhcCeeeceEEEEECCCCcEEEEecCCCCC---Cc-----cccccc-----cCcccccccceeeEEEEc-ccccccC
Q psy2699 178 IDDILNGFQVNWMNLRDVDTGELLWQGNDDLSL---AD-----SEHEAR-----VPKKILNCRAVSRELNFS-SVQPIQM 243 (398)
Q Consensus 178 a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~---Pe-----~E~eAR-----FPpkFLrcKtVgrtIeFS-GdEPI~N 243 (398)
.+.-.|||+|++|+|||+|||+||||+++|... +. ++.++| |||+||+||+|||+|+|| |++||+|
T Consensus 79 ~~aN~y~I~F~~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~p~FLklktVga~i~Fsvgdkpv~n 158 (240)
T 4goj_C 79 PEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNN 158 (240)
T ss_dssp GGGCTTCCEEEEEEEEETTTCCEEEEEEC------------------CCEEEEEECGGGGGCSEEEEEEEEECCSSCEEE
T ss_pred ccccccCcceeEEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecCHHHhcccceeeEEEEeeCceehhc
Confidence 445679999999999999999999999998642 11 123444 999999999999999999 9999999
Q ss_pred ceeEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCCCCC----CccCCEEEEEEeee
Q psy2699 244 LKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPP----PLHDWLLVGQIKFK 314 (398)
Q Consensus 244 FRMIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNvETk----FFDGD~LIm~sk~~ 314 (398)
|||||||||||+|||+|||+||||||+|+||||||||+|++++||+++||+||+||+ |||||+||||||-.
T Consensus 159 FRmiERhyFrd~lLksfDFeFGFcIPnS~NTWE~IyE~p~ls~~l~~emi~~p~Et~sdSFYFvddkLvMHNKAd 233 (240)
T 4goj_C 159 FRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKAD 233 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEECTTCEEEEEEEEECCCCCHHHHHHHHHSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred ceeeehhhhcccchheeccccceeccCCcccceeEEecCCcchhhHHHHHhCCCceeeeeeEEECCEEEEcchhh
Confidence 999999999999999999999999999999999999999999999999999999775 89999999999953
No 3
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=100.00 E-value=1.5e-54 Score=391.12 Aligned_cols=137 Identities=23% Similarity=0.399 Sum_probs=124.9
Q ss_pred HHhhhcCeeeceEEEEECCCCcEEEEecCCCCCC--------ccccccc-----cCcccccccceeeEEEEc-ccccccC
Q psy2699 178 IDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLA--------DSEHEAR-----VPKKILNCRAVSRELNFS-SVQPIQM 243 (398)
Q Consensus 178 a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~P--------e~E~eAR-----FPpkFLrcKtVgrtIeFS-GdEPI~N 243 (398)
.+.=.+||+|++|+|||+|||+||||+++|.+.+ .+++++| |||+||+||+|||+|+|| |++||+|
T Consensus 34 ~~aN~y~I~F~~F~IRD~etg~vLFei~k~~~~~~~~~~~~~~~~~~~R~vrYqF~~~~L~~k~V~~~i~Fsvgdkpi~n 113 (195)
T 3gqq_A 34 PEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNN 113 (195)
T ss_dssp GGGCTTCCEEEEEEEEETTTCCEEEEEECCC--------------CTTCEEEEECCGGGGGCSEEEEEEEEECCSSCBCS
T ss_pred ccccEeeeEEEEEEEeccCCCCEEEEecCCCCccccccccccCCccccceEEEEeCHHHhcchhhceEEEEeeCCccccc
Confidence 3445799999999999999999999999987543 2356775 999999999999999999 9999999
Q ss_pred ceeEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCCCCC----CccCCEEEEEEeee
Q psy2699 244 LKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPP----PLHDWLLVGQIKFK 314 (398)
Q Consensus 244 FRMIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNvETk----FFDGD~LIm~sk~~ 314 (398)
|||||||||||+|||+|||+||||||+|+||||||||+|++++.+..+||.+|+||+ ||++|+||||||-.
T Consensus 114 FRmierhyF~~~llk~~dF~FGFcIP~StNTWE~iye~P~l~~~~i~emi~~P~et~SDSFYFVd~kLvMHNKA~ 188 (195)
T 3gqq_A 114 FRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKAD 188 (195)
T ss_dssp EEEEEEEEETTEEEEEEEEECCCBCTTSEEEEEEEEECCCCCHHHHHHHHHSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred cEEEEEEEeCCceeeEEeeeeeeEcCCCCccceeeeecCCCCHHHHHHHHhCCCccccceeEEECCEEEEcccee
Confidence 999999999999999999999999999999999999999999999999999999998 89999999999965
No 4
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=50.42 E-value=31 Score=29.72 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=54.7
Q ss_pred eeeEEEEc-ccccccCceeEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCC-------CCC
Q psy2699 229 VSRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT-------EPP 300 (398)
Q Consensus 229 VgrtIeFS-GdEPI~NFRMIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNv-------ETk 300 (398)
-.-+|.|. ..++|.+++-+|.++=+|-.+..=.+-.|=.-|+... ..+.+|++ ..| ||++ -++
T Consensus 47 Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~---y~~~~~~e--eaP----sG~laRG~Y~a~s~ 117 (141)
T 1kmt_A 47 YRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAA---YEFLTPVE--EAP----KGMLARGSYSIKSR 117 (141)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSC---EEEECCCE--ECC----CSTTTCEEEEEEEE
T ss_pred EEEEEEEEEccccccCcEEEEEEEECCEEECcceEeeeccCCCCCc---ceecCCCc--cCC----ceeEEeeeeeeeEE
Confidence 34578888 8899999999999999999999999999998897653 66677654 233 4554 566
Q ss_pred CccCCE
Q psy2699 301 PLHDWL 306 (398)
Q Consensus 301 FFDGD~ 306 (398)
|.|+|.
T Consensus 118 F~DDD~ 123 (141)
T 1kmt_A 118 FTDDDK 123 (141)
T ss_dssp EECTTC
T ss_pred EEcCCC
Confidence 888885
No 5
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=42.78 E-value=8.8 Score=27.39 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=15.1
Q ss_pred ccceeeeeeeeEEecCCCC
Q psy2699 255 RVLEEWNFDFGFVIPASVN 273 (398)
Q Consensus 255 qLLKsFDFeFGFCIPnSTN 273 (398)
+-|=+=.|+.|||+|.|--
T Consensus 11 ~~LFSVnFDLGf~~~dSDd 29 (37)
T 4day_C 11 RDLFSVTFDLGFCSPDSDD 29 (37)
T ss_pred cceEEEEeccccccCCcch
Confidence 4455778999999999863
No 6
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A
Probab=34.26 E-value=65 Score=28.79 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=53.8
Q ss_pred eeEEEEc-ccccccCceeEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCC-------CCCC
Q psy2699 230 SRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT-------EPPP 301 (398)
Q Consensus 230 grtIeFS-GdEPI~NFRMIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNv-------ETkF 301 (398)
.-+|.|. ..++|.++|-+|.++=+|-.+..=.+-.|=.-|+... .++.+|++ ..| ||++ -++|
T Consensus 87 ~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~---y~~~~p~e--eaP----sG~laRG~Y~a~skF 157 (180)
T 1ds6_B 87 RVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE---YEFLTPVE--EAP----KGMLARGTYHNKSFF 157 (180)
T ss_dssp EEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSC---EEEECCCE--ECC----CSTTTCEEEEEEEEE
T ss_pred EEEEEEEEecccccCcEEEEEEEECCEEECCceEeeeccCCCCCc---eeecCCCc--cCC----cceeeeeeeeeeEEE
Confidence 3478888 8899999999999999999999999999988897654 66777654 233 4554 5568
Q ss_pred ccCCE
Q psy2699 302 LHDWL 306 (398)
Q Consensus 302 FDGD~ 306 (398)
.|+|.
T Consensus 158 ~DDD~ 162 (180)
T 1ds6_B 158 TDDDK 162 (180)
T ss_dssp ECTTC
T ss_pred EcCCC
Confidence 88875
No 7
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Probab=30.44 E-value=78 Score=29.31 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=54.2
Q ss_pred eeEEEEc-ccccccCceeEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhh-cCCC--CCCCccCC
Q psy2699 230 SRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVL-NNTT--EPPPLHDW 305 (398)
Q Consensus 230 grtIeFS-GdEPI~NFRMIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmL-SGNv--ETkFFDGD 305 (398)
.-+|.|. ..++|..+|-+|.++=+|-.+..=.+-.|=.-|+... ..+.+|++ .-|.-|| .|.+ -++|.|+|
T Consensus 126 ~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~MlGSY~P~~e~---y~~~~p~E--eAPSGmLARG~Y~akSkF~DDD 200 (219)
T 1doa_B 126 RIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEE---YEFLTPME--EAPKGMLARGSYNIKSRFTDDD 200 (219)
T ss_dssp EEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSC---EEEECCCE--ECCCTTSCCSEEEEEEEEECTT
T ss_pred EEEEEEEEecceecCcEEEEEEEECCeEECCcceeeeccCCCCCc---ccccCCCc--cCCccceeeeeeeeeEEEEeCC
Confidence 3478888 8899999999999999999999999999988897653 66777654 2332222 2333 56688887
Q ss_pred E
Q psy2699 306 L 306 (398)
Q Consensus 306 ~ 306 (398)
.
T Consensus 201 ~ 201 (219)
T 1doa_B 201 R 201 (219)
T ss_dssp C
T ss_pred C
Confidence 6
No 8
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=20.38 E-value=66 Score=20.96 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=13.0
Q ss_pred EEEEECCCCcEEEEe
Q psy2699 190 MNLRDVDTGELLWQG 204 (398)
Q Consensus 190 FkIRDaDTGkVLFEi 204 (398)
|-|+|.+||.+||-.
T Consensus 13 f~I~~~~t~~iLF~G 27 (34)
T 2h4p_B 13 FFIRHNKSKTILFFG 27 (34)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEE
Confidence 679999999999954
No 9
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=20.33 E-value=12 Score=30.32 Aligned_cols=26 Identities=27% Similarity=0.685 Sum_probs=21.1
Q ss_pred ecCCCCcceEEEecCCCCCCCchhhhc
Q psy2699 268 IPASVNTWQSIIESAPESQMMPAKVLN 294 (398)
Q Consensus 268 IPnSTNTWEhIYEapplSqMLPAEmLS 294 (398)
+|.-.|||..|.|.+.- .+||++.++
T Consensus 32 LPpgVnTW~qI~el~qk-k~i~~~~m~ 57 (81)
T 2ko4_A 32 IPPNINTWQQVTALAQQ-KLLTPQDME 57 (81)
T ss_dssp CCTTTCBHHHHHHHHTT-TSSCHHHHH
T ss_pred CCCCcchHHHHHHHHHc-CCCCHHHHH
Confidence 57789999999999887 477777653
No 10
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=19.76 E-value=71 Score=20.41 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=12.9
Q ss_pred EEEEECCCCcEEEEe
Q psy2699 190 MNLRDVDTGELLWQG 204 (398)
Q Consensus 190 FkIRDaDTGkVLFEi 204 (398)
|-|+|.+||.+||-.
T Consensus 12 f~I~~~~t~~iLF~G 26 (31)
T 1hle_B 12 FFIRHNPSANILFLG 26 (31)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEEE
Confidence 679999999999953
Done!