RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2699
         (398 letters)



>gnl|CDD|203238 pfam05351, GMP_PDE_delta, GMP-PDE, delta subunit.  GMP-PDE delta
           subunit was originally identified as a fourth subunit of
           rod-specific cGMP phosphodiesterase (PDE)(EC:3.1.4.35).
           The precise function of PDE delta subunit in the rod
           specific GMP-PDE complex is unclear. In addition, PDE
           delta subunit is not confined to photoreceptor cells but
           is widely distributed in different tissues. PDE delta
           subunit is thought to be a specific soluble transport
           factor for certain prenylated proteins and Arl2-GTP a
           regulator of PDE-mediated transport.
          Length = 156

 Score =  152 bits (385), Expect = 7e-45
 Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 10/132 (7%)

Query: 177 KIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADS---------EHEARVPKKILNCR 227
           + +  L G +     +RD +TG++L++   D S  D          E   + P K L  +
Sbjct: 1   RPEANLYGIKFTRFKIRDAETGKVLFEIAKDPSDEDLPEEDPNAGREVRYQFPPKFLKLK 60

Query: 228 AVSRELNFSS-VQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQ 286
            V   + F+   +P++  ++ ++  FK ++L+ ++F+FGF IP S NTW+ I E  P SQ
Sbjct: 61  TVGATVEFTVGDKPVKNFRMIERHYFKGQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQ 120

Query: 287 MMPAKVLNNTTE 298
           M+PA++L+   E
Sbjct: 121 MLPAEMLSGPYE 132


>gnl|CDD|222114 pfam13416, SBP_bac_8, Bacterial extracellular solute-binding
           protein.  This family includes bacterial extracellular
           solute-binding proteins.
          Length = 281

 Score = 29.3 bits (66), Expect = 3.4
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 13/83 (15%)

Query: 66  FPSALFSTYLFYYDSA--PKNTYKTVE------KKTLGIFSWKNP----HLTGLSSNRGE 113
            P A  +TY+ YY+     K   KT +      K   G F   +P     L  L ++ G 
Sbjct: 87  VPYAAGTTYVLYYNKDLLEKADPKTWDDLLDAAKAVKGKFGLPDPPSGFLLAALLAD-GV 145

Query: 114 KFFTQIQKYPKEKEGKAKLRNWV 136
            F    +     K+  A L+   
Sbjct: 146 DFDDDGKGVEDLKKALAYLKKLK 168


>gnl|CDD|191500 pfam06351, Allene_ox_cyc, Allene oxide cyclase.  This family
           consists of several plant specific allene oxide cyclase
           proteins (EC:5.3.99.6). The allene oxide cyclase
           (AOC)-catalyzed step in jasmonate (JA) biosynthesis is
           important in the wound response of tomato.
          Length = 177

 Score = 28.6 bits (64), Expect = 4.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 128 GKAKLRNWVFKEKLSNRTFFAGTRDLTETTESPAIMTSVSVKLTDAQKA 176
           G+ KL+  VF  KL    +  G +DL E      +  S SV+ + A KA
Sbjct: 119 GQVKLQQIVFPFKLFYTFYLKGIKDLPEELLGKPVPPSPSVEPSPAAKA 167


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0699    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,727,249
Number of extensions: 1822189
Number of successful extensions: 1313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1311
Number of HSP's successfully gapped: 8
Length of query: 398
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 299
Effective length of database: 6,546,556
Effective search space: 1957420244
Effective search space used: 1957420244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)