RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2699
         (398 letters)



>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 149

 Score =  182 bits (464), Expect = 2e-57
 Identities = 79/125 (63%), Positives = 99/125 (79%)

Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
           A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct: 2   AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 61

Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
           LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 62  LNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 121

Query: 293 LNNTT 297
           L    
Sbjct: 122 LTGNV 126


>d1z1za1 d.323.1.1 (A:2-130) Minor tail protein gpU {Bacteriophage
           lambda [TaxId: 10710]}
          Length = 129

 Score = 29.0 bits (65), Expect = 0.48
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 138 KEKLSNRTFFAGTRDLTETTESPAIMTSVSVKLTDAQ 174
           ++  +  TFF G   + +  + PA+    +V LT A+
Sbjct: 14  EKHDTGATFFDGRPAVFDEADFPAV----AVYLTGAE 46


>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus methylotrophus,
           strain w3a1 [TaxId: 17]}
          Length = 124

 Score = 26.0 bits (57), Expect = 4.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 101 NPHLTGLSSNRGEKFFTQIQKYPKEKE 127
           NP     S   G+ FF +  K P  KE
Sbjct: 20  NPMYEAPSITDGKIFFNRKFKTPSGKE 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0652    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,462,238
Number of extensions: 64812
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 4
Length of query: 398
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,213,086
Effective search space: 377269746
Effective search space used: 377269746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)