BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2700
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
          Length = 393

 Score = 29.3 bits (64), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 31  EEKPDLMKEEKPDFMKDERSDLMKEEMPDLMKEEMPDLMKE 71
           +E+P L   ++  F  D+R D++ EE+P L KE     +KE
Sbjct: 78  KERPKLCSYKEASF--DDRQDIVVEEIPRLAKEAAEKAIKE 116


>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
          Length = 393

 Score = 29.3 bits (64), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 31  EEKPDLMKEEKPDFMKDERSDLMKEEMPDLMKEEMPDLMKE 71
           +E+P L   ++  F  D+R D++ EE+P L KE     +KE
Sbjct: 78  KERPKLCSYKEASF--DDRQDIVVEEIPRLAKEAAEKAIKE 116


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.132    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,793,337
Number of Sequences: 62578
Number of extensions: 109738
Number of successful extensions: 291
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 13
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)