BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2700
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q13477|MADCA_HUMAN Mucosal addressin cell adhesion molecule 1 OS=Homo sapiens
           GN=MADCAM1 PE=1 SV=2
          Length = 382

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 16/41 (39%)

Query: 16  EKPDLMREEKPDLMREEKPDLMKEEKPDFMKDERSDLMKEE 56
           E PD    E PD    E PD   +E PD    E  D    E
Sbjct: 231 EPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPE 271



 Score = 29.6 bits (65), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 16/41 (39%)

Query: 40  EKPDFMKDERSDLMKEEMPDLMKEEMPDLMKEEKPDLMKEE 80
           E PD    E  D    E PD   +E PD    E PD    E
Sbjct: 231 EPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPE 271



 Score = 29.6 bits (65), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 14/33 (42%)

Query: 11  DLMQEEKPDLMREEKPDLMREEKPDLMKEEKPD 43
           D    E PD    E PD   +E PD    E PD
Sbjct: 234 DTTSPESPDTTSPESPDTTSQEPPDTTSPEPPD 266



 Score = 29.6 bits (65), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 16/41 (39%)

Query: 32  EKPDLMKEEKPDFMKDERSDLMKEEMPDLMKEEMPDLMKEE 72
           E PD    E PD    E  D   +E PD    E PD    E
Sbjct: 231 EPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPE 271



 Score = 28.9 bits (63), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 15/41 (36%)

Query: 24  EKPDLMREEKPDLMKEEKPDFMKDERSDLMKEEMPDLMKEE 64
           E PD    E PD    E PD    E  D    E PD    E
Sbjct: 231 EPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPE 271


>sp|Q9DHF5|VPA2_BEFVB Protein alpha-2 OS=Bovine ephemeral fever virus (strain BB7721)
          GN=alpha PE=4 SV=1
          Length = 116

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 45 MKDERSDLMKEEMPDLMKEEMPDLMKEEKPDLMKEEKLDIFTC 87
          +  + S + K E+  LM+E +  LMKEEK D+M +E+ +   C
Sbjct: 13 IGKQNSRIHKLELWKLMEEGLHTLMKEEKLDIMLKEEANFGFC 55


>sp|Q5BEN5|STU1_EMENI Protein stu1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
           CBS 112.46 / NRRL 194 / M139) GN=stu1 PE=3 SV=2
          Length = 1261

 Score = 29.3 bits (64), Expect = 8.0,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 39/83 (46%)

Query: 1   MPDLMQNERLDLMQEEKPDLMREEKPDLMREEKPDLMKEEKPDFMKDERSDLMKEEMPDL 60
           M D   + R D + +EK +    E  D M +E+ +   +E  D   DER D M  E  D 
Sbjct: 824 MDDKNYDGRADEIVQEKVNETVYETVDEMVDERANERVDEYFDEHVDERIDEMVREKVDE 883

Query: 61  MKEEMPDLMKEEKPDLMKEEKLD 83
             +E  D   +EK D   +EK+D
Sbjct: 884 KVDEEVDEKVDEKVDEKVDEKVD 906


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.132    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,171,331
Number of Sequences: 539616
Number of extensions: 1649555
Number of successful extensions: 12213
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 9299
Number of HSP's gapped (non-prelim): 2093
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)