Query psy2700
Match_columns 88
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Aug 16 23:00:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01023 S_100: S-100/ICaBP ty 63.7 4.1 8.8E-05 23.4 1.0 19 52-70 25-43 (44)
2 cd05024 S-100A10 S-100A10: A s 35.5 24 0.00051 23.3 1.3 23 51-73 23-45 (91)
3 PF02675 AdoMet_dc: S-adenosyl 31.8 16 0.00034 23.1 0.0 7 81-87 71-77 (106)
4 TIGR03330 SAM_DCase_Bsu S-aden 30.1 18 0.00039 23.8 0.1 7 81-87 76-82 (112)
5 PRK03124 S-adenosylmethionine 27.0 22 0.00048 24.2 0.1 7 81-87 77-83 (127)
6 PRK01706 S-adenosylmethionine 26.0 23 0.00051 23.9 0.1 7 81-87 79-85 (123)
7 PRK00458 S-adenosylmethionine 25.1 25 0.00054 23.9 0.1 7 81-87 89-95 (127)
8 PRK01236 S-adenosylmethionine 23.6 28 0.0006 24.0 0.1 7 81-87 78-84 (131)
9 PRK02770 S-adenosylmethionine 23.1 29 0.00063 24.2 0.1 7 81-87 90-96 (139)
10 PRK04025 S-adenosylmethionine 22.5 30 0.00065 24.1 0.1 7 81-87 77-83 (139)
11 PF05454 DAG1: Dystroglycan (D 20.0 35 0.00075 26.6 0.0 41 31-76 181-221 (290)
No 1
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=63.65 E-value=4.1 Score=23.35 Aligned_cols=19 Identities=37% Similarity=0.858 Sum_probs=12.9
Q ss_pred hHHhhhhhHHHhhchhhhh
Q psy2700 52 LMKEEMPDLMKEEMPDLMK 70 (88)
Q Consensus 52 lmkeempdlmkeempdlmk 70 (88)
|-|.|+-.|+..|+|++++
T Consensus 25 Lsk~Elk~Ll~~Elp~flk 43 (44)
T PF01023_consen 25 LSKKELKELLEKELPNFLK 43 (44)
T ss_dssp EEHHHHHHHHHHHSTTTHH
T ss_pred EcHHHHHHHHHHHHHHHhc
Confidence 5566777777777777665
No 2
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=35.54 E-value=24 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=16.5
Q ss_pred hhHHhhhhhHHHhhchhhhhhcC
Q psy2700 51 DLMKEEMPDLMKEEMPDLMKEEK 73 (88)
Q Consensus 51 dlmkeempdlmkeempdlmkeek 73 (88)
.|-|.|+..||+.|+|.+++..+
T Consensus 23 tLsk~Elk~Ll~~Elp~~l~~~~ 45 (91)
T cd05024 23 YLNRDDLQKLMEKEFSEFLKNQN 45 (91)
T ss_pred cCCHHHHHHHHHHHhHHHHcCCC
Confidence 36677777888888887777644
No 3
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=31.81 E-value=16 Score=23.13 Aligned_cols=7 Identities=71% Similarity=1.478 Sum_probs=4.9
Q ss_pred hcccccc
Q psy2700 81 KLDIFTC 87 (88)
Q Consensus 81 kldiftc 87 (88)
-+|||||
T Consensus 71 avDiftC 77 (106)
T PF02675_consen 71 AVDIFTC 77 (106)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 4677777
No 4
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=30.08 E-value=18 Score=23.77 Aligned_cols=7 Identities=57% Similarity=1.436 Sum_probs=4.9
Q ss_pred hcccccc
Q psy2700 81 KLDIFTC 87 (88)
Q Consensus 81 kldiftc 87 (88)
-+|||||
T Consensus 76 avDiftC 82 (112)
T TIGR03330 76 AVDVFTC 82 (112)
T ss_pred EEEEEec
Confidence 4677777
No 5
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=27.02 E-value=22 Score=24.20 Aligned_cols=7 Identities=57% Similarity=1.436 Sum_probs=4.9
Q ss_pred hcccccc
Q psy2700 81 KLDIFTC 87 (88)
Q Consensus 81 kldiftc 87 (88)
-+|||||
T Consensus 77 avDiftC 83 (127)
T PRK03124 77 AVDVFTC 83 (127)
T ss_pred EEEEEec
Confidence 3677777
No 6
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=26.04 E-value=23 Score=23.95 Aligned_cols=7 Identities=43% Similarity=1.194 Sum_probs=4.8
Q ss_pred hcccccc
Q psy2700 81 KLDIFTC 87 (88)
Q Consensus 81 kldiftc 87 (88)
-+|||||
T Consensus 79 avDiftC 85 (123)
T PRK01706 79 AIDCYTC 85 (123)
T ss_pred EEEEEec
Confidence 3677777
No 7
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=25.09 E-value=25 Score=23.92 Aligned_cols=7 Identities=43% Similarity=1.369 Sum_probs=4.7
Q ss_pred hcccccc
Q psy2700 81 KLDIFTC 87 (88)
Q Consensus 81 kldiftc 87 (88)
-+|||||
T Consensus 89 avDiftC 95 (127)
T PRK00458 89 TVDVYTC 95 (127)
T ss_pred EEEEEec
Confidence 3677777
No 8
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=23.55 E-value=28 Score=23.95 Aligned_cols=7 Identities=57% Similarity=1.474 Sum_probs=4.7
Q ss_pred hcccccc
Q psy2700 81 KLDIFTC 87 (88)
Q Consensus 81 kldiftc 87 (88)
-+|||||
T Consensus 78 avDiftC 84 (131)
T PRK01236 78 TLDVYTC 84 (131)
T ss_pred EEEEEec
Confidence 3677777
No 9
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=23.06 E-value=29 Score=24.16 Aligned_cols=7 Identities=57% Similarity=1.436 Sum_probs=4.6
Q ss_pred hcccccc
Q psy2700 81 KLDIFTC 87 (88)
Q Consensus 81 kldiftc 87 (88)
-+|||||
T Consensus 90 avDiftC 96 (139)
T PRK02770 90 AVDVFTC 96 (139)
T ss_pred EEEEEec
Confidence 3577777
No 10
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=22.46 E-value=30 Score=24.06 Aligned_cols=7 Identities=57% Similarity=1.450 Sum_probs=5.0
Q ss_pred hcccccc
Q psy2700 81 KLDIFTC 87 (88)
Q Consensus 81 kldiftc 87 (88)
-+|||||
T Consensus 77 avDIftC 83 (139)
T PRK04025 77 ALDVYTC 83 (139)
T ss_pred EEEEEec
Confidence 3677877
No 11
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=20.03 E-value=35 Score=26.55 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=0.0
Q ss_pred hcCccchhhcCCcchhHHhhhhHHhhhhhHHHhhchhhhhhcCccc
Q psy2700 31 EEKPDLMKEEKPDFMKDERSDLMKEEMPDLMKEEMPDLMKEEKPDL 76 (88)
Q Consensus 31 eekpdlmkeekpdfmkdersdlmkeempdlmkeempdlmkeekpdl 76 (88)
|+.....+.-.|=...||-.+- |.+ ...-+|=+||||||-|
T Consensus 181 ee~~~f~~KGiPvIF~dElee~-kp~----~~~~~P~IlkeEkPPl 221 (290)
T PF05454_consen 181 EEQKTFISKGIPVIFQDELEES-KPE----PGSKSPVILKEEKPPL 221 (290)
T ss_dssp ----------------------------------------------
T ss_pred chhHHHHhcCCceecccccccc-CCC----CCCCCCeeecccCCCC
Confidence 3444444444444444444331 111 1223455555555544
Done!