Query psy2700
Match_columns 88
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 23:00:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iii_A S-adenosylmethionine de 26.6 14 0.00048 24.4 0.0 7 81-87 78-84 (135)
2 1vr7_A Adometdc, samdc, S-aden 25.2 15 0.00052 24.6 0.0 7 81-87 89-95 (142)
3 2a40_C Wiskott-aldrich syndrom 17.0 44 0.0015 18.0 0.8 11 46-56 2-12 (32)
4 2w4s_A Ankyrin-repeat protein; 3.3 3.5E+02 0.012 17.6 0.7 24 55-78 4-27 (113)
5 1t8h_A YLMD protein sequence h 3.2 1.9E+02 0.0066 20.6 -0.7 13 1-13 4-16 (277)
6 1gxy_A T-cell ECTO-ADP-ribosyl 3.2 5.5E+02 0.019 17.9 1.7 16 50-65 22-37 (226)
7 3h7h_B Transcription elongatio 3.0 3.4E+02 0.012 16.8 0.4 12 63-74 87-98 (106)
8 3m1f_V VOPL, putative uncharac 2.7 4.8E+02 0.016 14.3 0.7 9 47-55 4-12 (31)
9 3gee_A MNME, tRNA modification 2.7 3.2E+02 0.011 20.2 -0.0 12 5-16 133-144 (476)
10 3b5n_D Protein transport prote 2.6 5.1E+02 0.018 14.7 0.9 10 6-15 36-45 (64)
No 1
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=26.58 E-value=14 Score=24.36 Aligned_cols=7 Identities=43% Similarity=1.369 Sum_probs=5.0
Q ss_pred hcccccc
Q psy2700 81 KLDIFTC 87 (88)
Q Consensus 81 kldiftc 87 (88)
-+|||||
T Consensus 78 avDvftC 84 (135)
T 2iii_A 78 TVDVYTC 84 (135)
T ss_dssp EEEEEEE
T ss_pred EEEEEcc
Confidence 3677877
No 2
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=25.18 E-value=15 Score=24.55 Aligned_cols=7 Identities=57% Similarity=1.469 Sum_probs=5.1
Q ss_pred hcccccc
Q psy2700 81 KLDIFTC 87 (88)
Q Consensus 81 kldiftc 87 (88)
-+|||||
T Consensus 89 avDVftC 95 (142)
T 1vr7_A 89 AIDLFTC 95 (142)
T ss_dssp EEEEEEE
T ss_pred EEEEEcc
Confidence 3678887
No 3
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=16.99 E-value=44 Score=18.02 Aligned_cols=11 Identities=45% Similarity=0.625 Sum_probs=8.1
Q ss_pred hHHhhhhHHhh
Q psy2700 46 KDERSDLMKEE 56 (88)
Q Consensus 46 kdersdlmkee 56 (88)
.|-|||||++.
T Consensus 2 ~d~RsdLL~~I 12 (32)
T 2a40_C 2 SDARSDLLSAI 12 (32)
T ss_dssp CCHHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 36788888764
No 4
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A {Cryptosporidium parvum}
Probab=3.28 E-value=3.5e+02 Score=17.60 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=13.9
Q ss_pred hhhhhHHHhhchhhhhhcCccchh
Q psy2700 55 EEMPDLMKEEMPDLMKEEKPDLMK 78 (88)
Q Consensus 55 eempdlmkeempdlmkeekpdlmk 78 (88)
+++++.+-.++-.-++|.|.+|+.
T Consensus 4 d~~~~~va~~ia~~L~E~k~~li~ 27 (113)
T 2w4s_A 4 DTMESIVLNTIVTGLQEPKKEFIA 27 (113)
T ss_dssp CHHHHHHHHHHHHHHC---CHHHH
T ss_pred cchHHHHHHHHHHHHCCCcHHHHH
Confidence 355666667777777777777664
No 5
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=3.25 E-value=1.9e+02 Score=20.57 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=5.9
Q ss_pred Ccchhhhhhhhhh
Q psy2700 1 MPDLMQNERLDLM 13 (88)
Q Consensus 1 mpdlmqnerldlm 13 (88)
|||+.|+|--..+
T Consensus 4 ~~~~~~~e~~~~l 16 (277)
T 1t8h_A 4 MPDIFQQEARGWL 16 (277)
T ss_dssp CCCSEEECSSSEE
T ss_pred ccHHHHHhcccEE
Confidence 4555554444333
No 6
>1gxy_A T-cell ECTO-ADP-ribosyltransferase 2; immuno-regulation; 1.71A {Rattus norvegicus} SCOP: d.166.1.3 PDB: 1gxz_A* 1gy0_A 1og1_A* 1og4_A* 1og3_A*
Probab=3.22 E-value=5.5e+02 Score=17.88 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=11.1
Q ss_pred hhhHHhhhhhHHHhhc
Q psy2700 50 SDLMKEEMPDLMKEEM 65 (88)
Q Consensus 50 sdlmkeempdlmkeem 65 (88)
++.|.+.+|.++++|+
T Consensus 22 ~~~M~~~~~~~l~~E~ 37 (226)
T 1gxy_A 22 VNKMEEKAPLLLQEDF 37 (226)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777777765
No 7
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=3.02 E-value=3.4e+02 Score=16.80 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=7.7
Q ss_pred hhchhhhhhcCc
Q psy2700 63 EEMPDLMKEEKP 74 (88)
Q Consensus 63 eempdlmkeekp 74 (88)
+|||++++-.|.
T Consensus 87 ~Em~~~L~~~k~ 98 (106)
T 3h7h_B 87 KEMTDVLKVVKE 98 (106)
T ss_dssp GGTTGGGCCEEC
T ss_pred HHHHHhcCcCcc
Confidence 577777765543
No 8
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=2.70 E-value=4.8e+02 Score=14.26 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=5.7
Q ss_pred HHhhhhHHh
Q psy2700 47 DERSDLMKE 55 (88)
Q Consensus 47 dersdlmke 55 (88)
..||.||.+
T Consensus 4 edrSKLMEq 12 (31)
T 3m1f_V 4 EDHSKLMEQ 12 (31)
T ss_dssp TTHHHHHHH
T ss_pred hhHHHHHHH
Confidence 357777754
No 9
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=2.66 E-value=3.2e+02 Score=20.19 Aligned_cols=12 Identities=50% Similarity=0.786 Sum_probs=7.9
Q ss_pred hhhhhhhhhhhc
Q psy2700 5 MQNERLDLMQEE 16 (88)
Q Consensus 5 mqnerldlmqee 16 (88)
+.|.|+||.|-|
T Consensus 133 flngk~dL~qaE 144 (476)
T 3gee_A 133 FLNGRIDLLQAE 144 (476)
T ss_dssp HHTTSSCHHHHH
T ss_pred hccCcCcHHHHH
Confidence 457777777754
No 10
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=2.64 E-value=5.1e+02 Score=14.68 Aligned_cols=10 Identities=40% Similarity=0.677 Sum_probs=6.6
Q ss_pred hhhhhhhhhh
Q psy2700 6 QNERLDLMQE 15 (88)
Q Consensus 6 qnerldlmqe 15 (88)
||++||-+.+
T Consensus 36 QN~~ldrI~~ 45 (64)
T 3b5n_D 36 QQKRLNNIEE 45 (64)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776643
Done!