RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2700
         (88 letters)



>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter.  [Transport and binding
           proteins, Other].
          Length = 953

 Score = 27.8 bits (62), Expect = 0.65
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 2   PDLMQNERLDLMQ--EEKPDLMREEKPDLMREEKPDLMKEEKPDFMKDERSDLMKEEM 57
            D+    + + M+  EE     R  K +  RE K   M   KP  + D        + 
Sbjct: 830 MDINAKPQTESMEAFEEMIRPFRLHKTEKDREAKDPKMTWTKPWKITDAELQSNVRKS 887


>gnl|CDD|183102 PRK11367, PRK11367, hypothetical protein; Provisional.
          Length = 476

 Score = 25.7 bits (56), Expect = 3.9
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 34  PDLMKEEKPDFMKDERSDLMKEEMPDLMKEE 64
           P+L  +E    +++  + L KE +P L K E
Sbjct: 318 PELANDEVA--LQEVNAALFKEYLPLLQKSE 346


>gnl|CDD|213367 cd12833, ZntB-like_1, Salmonella typhimurium Zn2+ transporter
           ZntB-like subgroup.  A bacterial subgroup belonging to
           the Escherichia coli CorA-Salmonella typhimurium
           ZntB_like family (EcCorA_ZntB-like) of the MIT
           superfamily of essential membrane proteins involved in
           transporting divalent cations (uptake or efflux) across
           membranes. This subgroup includes the Zn2+ transporter
           Salmonella typhimurium ZntB which mediates the efflux of
           Zn2+ (and Cd2+). Structures of the intracellular domain
           of Vibrio parahaemolyticus and Salmonella typhimurium
           ZntB form funnel-shaped homopentamers, the tip of the
           funnel is formed from two C-terminal transmembrane (TM)
           helices from each monomer, and the large opening of the
           funnel from the N-terminal cytoplasmic domains. The GMN
           signature motif of the MIT superfamily occurs just after
           TM1, mutation within this motif is known to abolish Mg2+
           transport through Salmonella typhimurium CorA, and
           Mrs2p. Natural variants such as GVN and GIN, which occur
           in proteins belonging to this subfamily, may be
           associated with the transport of different divalent
           cations, such as zinc and cadmium. The functional
           diversity of MIT transporters may also be due to minor
           structural differences regulating gating, substrate
           selection, and transport.
          Length = 290

 Score = 25.5 bits (57), Expect = 4.2
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 5   MQNERLDLMQEEKPDLMREEKPDLMREEKPDLMKEEKPDFMKDERSDLMKEEMPDLMKEE 64
           +  E L  + ++    +RE    L R        E+  D ++ ER+ +++EE+ +   E+
Sbjct: 174 LAREDLPWLSDDDRLRLREAADRLTR------YIEDL-DAIR-ERAAVLQEELTNRRAEQ 225

Query: 65  M 65
           M
Sbjct: 226 M 226


>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
           dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
           Reviewed.
          Length = 1208

 Score = 25.2 bits (56), Expect = 6.3
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 48  ERSDLMKEEMPDLMKEEMPDLM 69
           ER+ ++ E   DLM+  MP+L 
Sbjct: 613 ERAAIL-ERAADLMEAHMPELF 633


>gnl|CDD|237478 PRK13709, PRK13709, conjugal transfer nickase/helicase TraI;
            Provisional.
          Length = 1747

 Score = 24.8 bits (54), Expect = 7.5
 Identities = 9/66 (13%), Positives = 23/66 (34%)

Query: 2    PDLMQNERLDLMQEEKPDLMREEKPDLMREEKPDLMKEEKPDFMKDERSDLMKEEMPDLM 61
             +++   + +     + +   +E    M E KPDL   +    ++D              
Sbjct: 1641 AEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPDGKTEQAVRDIAGQERDRAAISER 1700

Query: 62   KEEMPD 67
            +  +P+
Sbjct: 1701 EAALPE 1706


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.311    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0857    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,743,923
Number of extensions: 422741
Number of successful extensions: 643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 77
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.0 bits)