RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2700
         (88 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
          programmed cell death; HET: DTP; 6.90A {Drosophila
          melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.6 bits (68), Expect = 0.053
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 6/55 (10%)

Query: 35 DLMKEEKPDFMKD-ERSDLMKEEMPDLMKEEMPDLMKEEKPDLMKEEKLD-IFTC 87
          D++   +  F+ + +  D+       L KEE+  ++     D         +F  
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KD--AVSGTLRLFWT 70



 Score = 25.2 bits (54), Expect = 4.2
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 10  LDLMQEEKPDLMREEKPDLMREEKPDLMKEEKPDFMKDERSDLMKEEMPDLMKEEM 65
           L+L     P+ + E    L+ +  P+             R   ++ E+  L+K + 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 26.3 bits (57), Expect = 1.1
 Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 17  KPDLMREEKPDLMRE--EKPDLMKEEKPDFMKDERSDLMKEEMPDLMKEEMPDLMKEEKP 74
           + D + +E P+ +R+  E+     +E      D  S +M++E  +  K+++ +  + +  
Sbjct: 76  QADRLTQE-PESIRKWREEQRKRLQEL-----DAASKVMEQEWREKAKKDLEEWNQRQSE 129

Query: 75  DLMKEEK 81
            + K + 
Sbjct: 130 QVEKNKI 136


>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
          transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
          3euq_A*
          Length = 379

 Score = 26.1 bits (57), Expect = 1.7
 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 2/43 (4%)

Query: 29 MREEKPDLMKEEKPDFMKDERSDLMKEEMPDLMKEEMPDLMKE 71
             + P + K   P     E  ++   +   L  E     M E
Sbjct: 55 GNPDHPLVNKPNPPTV--KELHEVFMSDGVPLAVEASRKAMAE 95


>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
           protein structure initiative, PSI, joint center for
           structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
           SCOP: a.24.13.1 c.37.1.10
          Length = 306

 Score = 25.2 bits (56), Expect = 3.3
 Identities = 4/27 (14%), Positives = 13/27 (48%)

Query: 48  ERSDLMKEEMPDLMKEEMPDLMKEEKP 74
           +  + +KE + +++  +    +  E P
Sbjct: 78  DALESLKEIILEILNFDTKLNVPPEPP 104



 Score = 24.1 bits (53), Expect = 6.8
 Identities = 6/35 (17%), Positives = 16/35 (45%)

Query: 8   ERLDLMQEEKPDLMREEKPDLMREEKPDLMKEEKP 42
           ERL+    +  + ++E   +++  +    +  E P
Sbjct: 70  ERLEEKDGDALESLKEIILEILNFDTKLNVPPEPP 104


>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase,
           DPOR, (bacterio)chlorophyll biosynthesis,
           photosynthesis; 2.40A {Thermosynechococcus elongatus}
          Length = 511

 Score = 24.4 bits (53), Expect = 7.4
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 38  KEEKPDFMKDERSDLMKEEMPDLMKEEMPDLMKEEKPDLM 77
            +   D+ + E +    E +       + D +   +P  +
Sbjct: 337 CKYDADWFRAEVAGFCDEVLITDDHTVVGDAIARVEPAAI 376


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,405,924
Number of extensions: 80265
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 88
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.6 bits)