RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2700
         (88 letters)



>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
          {Escherichia coli [TaxId: 562]}
          Length = 467

 Score = 24.1 bits (51), Expect = 3.2
 Identities = 7/54 (12%), Positives = 17/54 (31%)

Query: 13 MQEEKPDLMREEKPDLMREEKPDLMKEEKPDFMKDERSDLMKEEMPDLMKEEMP 66
          + E      R  + + + +   +    +  D   D  +D     +   M+  M 
Sbjct: 11 VIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM 64


>d1gxya_ d.166.1.3 (A:) Eukaryotic mono-ADP-ribosyltransferase
          ART2.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 223

 Score = 22.9 bits (49), Expect = 7.7
 Identities = 5/16 (31%), Positives = 11/16 (68%)

Query: 50 SDLMKEEMPDLMKEEM 65
           + M+E+ P L++E+ 
Sbjct: 19 VNKMEEKAPLLLQEDF 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 340,368
Number of extensions: 15516
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 39
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.3 bits)