BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2701
         (75 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q13477|MADCA_HUMAN Mucosal addressin cell adhesion molecule 1 OS=Homo sapiens
           GN=MADCAM1 PE=1 SV=2
          Length = 382

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 15/36 (41%)

Query: 12  EKPDLMKEELPDLMKDEKPDLMKHEMPDLMKDEKPD 47
           E PD    E PD    E PD    E PD    E PD
Sbjct: 231 EPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPD 266



 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 16/41 (39%)

Query: 4   EKPDLMKGEKPDLMKEELPDLMKDEKPDLMKHEMPDLMKDE 44
           E PD    E PD    E PD    E PD    E PD    E
Sbjct: 231 EPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPE 271


>sp|P47344|Y098_MYCGE Uncharacterized protein MG098 OS=Mycoplasma genitalium (strain ATCC
           33530 / G-37 / NCTC 10195) GN=MG098 PE=3 SV=1
          Length = 477

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 6   PDLMKGEKPDLMKEELPDLMKDEKPDLMKHEMPDLMKDEKPDLMKHEMPELMKGERLDLM 65
           P ++KG K  +  E     +K    D+    MP+++  +K  L++ EM +L K  R+DL 
Sbjct: 348 PIMLKGFK-TVASETQTKGIKKSFSDMQSLIMPNVISHKKQQLIRKEMQQLAKTIRIDLS 406

Query: 66  KHE 68
             E
Sbjct: 407 DKE 409


>sp|B3A0R7|MRP_LOTGI Methionine-rich protein OS=Lottia gigantea PE=1 SV=1
          Length = 270

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 6   PDLMKGEKPDLMKEELPDLMKDEKPDLMKHEMPDLMKDEKPDLMKHEMPELMKG 59
           P++  G  P  M   +P  M    P  M   MP  M    P  M + MP  M G
Sbjct: 63  PNMNTGSLPGSMPGAMPGSMPGAMPGSMPGAMPGSMPGSMPGSMPNAMPGAMPG 116


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.132    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,017,830
Number of Sequences: 539616
Number of extensions: 1259139
Number of successful extensions: 3734
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3481
Number of HSP's gapped (non-prelim): 171
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)