Query psy2701
Match_columns 75
No_of_seqs 3 out of 5
Neff 1.5
Searched_HMMs 29240
Date Fri Aug 16 23:01:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t23_A Chromosomal protein MC1 4.9 2E+02 0.0069 18.7 0.6 9 11-19 69-77 (93)
2 2hay_A Putative NAD(P)H-flavin 4.8 2.6E+02 0.0089 17.0 1.0 21 53-73 4-24 (224)
3 3rjs_A Dynein light chain moto 3.6 3.9E+02 0.013 15.6 1.1 11 51-61 11-21 (89)
4 4ds1_A Dynein light chain 1, c 3.5 3.7E+02 0.013 16.1 0.9 19 45-63 13-31 (97)
5 2a40_C Wiskott-aldrich syndrom 2.9 3.8E+02 0.013 13.9 0.4 10 58-67 2-11 (32)
6 2c5i_P Vacuolar protein sortin 2.6 4.1E+02 0.014 14.0 0.4 9 64-72 3-11 (29)
7 4ajy_B Transcription elongatio 2.3 4.4E+02 0.015 16.8 0.3 11 17-27 95-105 (118)
8 2fnj_B Transcription elongatio 2.1 4E+02 0.014 16.8 -0.2 11 17-27 95-105 (118)
9 3lqv_P Splicing factor 3B subu 1.6 7.4E+02 0.025 13.6 0.4 10 57-66 23-32 (39)
10 2cme_A ORF-9B, ORF13, hypothet 1.5 8.3E+02 0.029 15.2 0.5 6 19-24 66-71 (78)
No 1
>1t23_A Chromosomal protein MC1; alpha/beta barrel, DNA binding protein; NMR {Methanosarcina thermophila} SCOP: d.247.1.1 PDB: 2khl_A
Probab=4.90 E-value=2e+02 Score=18.69 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=3.8
Q ss_pred CCCCcchhh
Q psy2701 11 GEKPDLMKE 19 (75)
Q Consensus 11 ~ekpd~m~~ 19 (75)
..+|+-||+
T Consensus 69 ~~~P~Wmp~ 77 (93)
T 1t23_A 69 KNRPAWMPE 77 (93)
T ss_dssp SCCCSSCCS
T ss_pred CCCcccCcc
Confidence 344444443
No 2
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Probab=4.82 E-value=2.6e+02 Score=17.01 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=12.0
Q ss_pred hhhhhhhhhhhhhhhccccCC
Q psy2701 53 MPELMKGERLDLMKHEKSVRP 73 (75)
Q Consensus 53 MpdeMsd~~~D~M~heksvrp 73 (75)
|...+.-...+.+...+|+|-
T Consensus 4 ~~~~~~~~~~~~i~~RrSvR~ 24 (224)
T 2hay_A 4 MDQTIHHQIQQALHFRTAVRV 24 (224)
T ss_dssp ----CHHHHHHHHHHCCBCCC
T ss_pred HHHhhhHHHHHHHHhchhhhc
Confidence 344444456778888888873
No 3
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=3.65 E-value=3.9e+02 Score=15.63 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=5.2
Q ss_pred cchhhhhhhhh
Q psy2701 51 HEMPELMKGER 61 (75)
Q Consensus 51 dEMpdeMsd~~ 61 (75)
-.||++|..+.
T Consensus 11 ~dM~~emq~~a 21 (89)
T 3rjs_A 11 ADMPEDLQQDA 21 (89)
T ss_dssp EESCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 34555554443
No 4
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=3.46 E-value=3.7e+02 Score=16.13 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=10.4
Q ss_pred Cccccccchhhhhhhhhhh
Q psy2701 45 KPDLMKHEMPELMKGERLD 63 (75)
Q Consensus 45 kpDeM~dEMpdeMsd~~~D 63 (75)
++--....||++|..+..+
T Consensus 13 k~~I~~~DM~~emq~~a~~ 31 (97)
T 4ds1_A 13 TPIVKASDITDKLKEDILT 31 (97)
T ss_dssp CCEEEEEEECHHHHHHHHH
T ss_pred ccEEEECCCCHHHHHHHHH
Confidence 3444455666666655443
No 5
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=2.87 E-value=3.8e+02 Score=13.94 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=6.7
Q ss_pred hhhhhhhhhh
Q psy2701 58 KGERLDLMKH 67 (75)
Q Consensus 58 sd~~~D~M~h 67 (75)
+|-|+|+|+-
T Consensus 2 ~d~RsdLL~~ 11 (32)
T 2a40_C 2 SDARSDLLSA 11 (32)
T ss_dssp CCHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 4567777764
No 6
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=2.60 E-value=4.1e+02 Score=14.05 Aligned_cols=9 Identities=44% Similarity=0.744 Sum_probs=4.0
Q ss_pred hhhhccccC
Q psy2701 64 LMKHEKSVR 72 (75)
Q Consensus 64 ~M~heksvr 72 (75)
.++|-||+|
T Consensus 3 qItHKK~lr 11 (29)
T 2c5i_P 3 QISHKKSLR 11 (29)
T ss_dssp ----CCCCC
T ss_pred cccccCCcc
Confidence 467888877
No 7
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=2.34 E-value=4.4e+02 Score=16.81 Aligned_cols=11 Identities=55% Similarity=0.788 Sum_probs=6.4
Q ss_pred hhhhccccccc
Q psy2701 17 MKEELPDLMKD 27 (75)
Q Consensus 17 m~~e~pd~m~D 27 (75)
-|-+|||-|+-
T Consensus 95 ~pp~lp~~~~~ 105 (118)
T 4ajy_B 95 SPPELPDVMKP 105 (118)
T ss_dssp CCCCCCGGGCC
T ss_pred CCCCccccccc
Confidence 34566666654
No 8
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=2.08 E-value=4e+02 Score=16.80 Aligned_cols=11 Identities=55% Similarity=0.788 Sum_probs=2.0
Q ss_pred hhhhccccccc
Q psy2701 17 MKEELPDLMKD 27 (75)
Q Consensus 17 m~~e~pd~m~D 27 (75)
-|.+|||-|+-
T Consensus 95 ~pp~~p~~~~~ 105 (118)
T 2fnj_B 95 SPPELPDVMKP 105 (118)
T ss_dssp CCCC-------
T ss_pred CCCCcchhhcc
Confidence 34556666654
No 9
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=1.59 E-value=7.4e+02 Score=13.65 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=6.4
Q ss_pred hhhhhhhhhh
Q psy2701 57 MKGERLDLMK 66 (75)
Q Consensus 57 Msd~~~D~M~ 66 (75)
++|+.+|.|-
T Consensus 23 ltDEeLD~mL 32 (39)
T 3lqv_P 23 LSDEELDAMF 32 (39)
T ss_dssp CCHHHHHHTC
T ss_pred CCHHHHHHhC
Confidence 5667777663
No 10
>2cme_A ORF-9B, ORF13, hypothetical protein 5; alternative open reading frame, lipid-binding, virus assembly; HET: D10; 2.8A {Human sars coronavirus} SCOP: b.164.1.1 PDB: 2cme_B* 2cme_E* 2cme_C*
Probab=1.46 E-value=8.3e+02 Score=15.22 Aligned_cols=6 Identities=83% Similarity=1.149 Sum_probs=3.5
Q ss_pred hhcccc
Q psy2701 19 EELPDL 24 (75)
Q Consensus 19 ~e~pd~ 24 (75)
+|+||+
T Consensus 66 eelpde 71 (78)
T 2cme_A 66 EELPDE 71 (78)
T ss_dssp GGSCSE
T ss_pred hhCCCc
Confidence 566665
Done!