Query psy2701
Match_columns 75
No_of_seqs 3 out of 5
Neff 1.5
Searched_HMMs 13730
Date Fri Aug 16 23:01:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2701.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2701hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fufa1 d.89.1.1 (A:131-256) T 2.5 2.8E+02 0.021 17.0 1.2 9 13-21 4-12 (126)
2 d2c9wb1 d.15.1.1 (B:2-104) Elo 2.0 2.4E+02 0.018 15.7 0.3 8 18-25 95-102 (103)
3 d1t23a_ d.247.1.1 (A:) Chromos 1.9 3.1E+02 0.022 16.0 0.6 6 12-17 70-75 (93)
4 d3e2ba1 d.39.1.1 (A:3-89) Dyne 1.7 3.7E+02 0.027 14.2 0.6 12 52-63 10-21 (87)
5 d1zpya1 a.25.1.5 (A:4-94) Hypo 1.5 4.3E+02 0.031 15.1 0.8 14 51-64 4-17 (91)
6 d1or7a2 a.177.1.1 (A:-1-111) S 1.5 4.2E+02 0.03 13.3 0.7 8 53-60 3-10 (113)
7 d2cmea1 b.164.1.1 (A:9-98) Hyp 1.5 3.9E+02 0.029 15.2 0.5 6 19-24 66-71 (78)
8 d2etda1 a.29.9.1 (A:35-183) Hy 1.0 3.6E+02 0.026 15.2 -0.5 10 62-71 34-43 (149)
9 d2fc3a1 d.79.3.1 (A:4-127) Rib 1.0 7.1E+02 0.052 13.5 0.9 15 52-66 7-21 (124)
10 d2hwna1 a.31.1.1 (A:5-43) cAMP 1.0 9.5E+02 0.069 11.3 1.3 20 49-68 1-20 (39)
No 1
>d2fufa1 d.89.1.1 (A:131-256) The origin DNA-binding domain of SV40 T-antigen {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=2.53 E-value=2.8e+02 Score=17.00 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=3.5
Q ss_pred CCcchhhhc
Q psy2701 13 KPDLMKEEL 21 (75)
Q Consensus 13 kpd~m~~e~ 21 (75)
+|+.+|.+|
T Consensus 4 ~P~D~P~~L 12 (126)
T d2fufa1 4 DPKDFPSEL 12 (126)
T ss_dssp CCSSSCGGG
T ss_pred CcccCcHHH
Confidence 344444333
No 2
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.03 E-value=2.4e+02 Score=15.72 Aligned_cols=8 Identities=63% Similarity=1.036 Sum_probs=3.4
Q ss_pred hhhccccc
Q psy2701 18 KEELPDLM 25 (75)
Q Consensus 18 ~~e~pd~m 25 (75)
|-++||-|
T Consensus 95 p~~~p~~~ 102 (103)
T d2c9wb1 95 PPELPDVM 102 (103)
T ss_dssp CCCCCGGG
T ss_pred CCCchhhc
Confidence 34444443
No 3
>d1t23a_ d.247.1.1 (A:) Chromosomal protein MC1 {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=1.85 E-value=3.1e+02 Score=16.00 Aligned_cols=6 Identities=33% Similarity=0.806 Sum_probs=2.3
Q ss_pred CCCcch
Q psy2701 12 EKPDLM 17 (75)
Q Consensus 12 ekpd~m 17 (75)
.+|+-|
T Consensus 70 ~~P~Wm 75 (93)
T d1t23a_ 70 NRPAWM 75 (93)
T ss_dssp CCCSSC
T ss_pred CCcccC
Confidence 334433
No 4
>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=1.65 E-value=3.7e+02 Score=14.16 Aligned_cols=12 Identities=33% Similarity=0.601 Sum_probs=6.6
Q ss_pred chhhhhhhhhhh
Q psy2701 52 EMPELMKGERLD 63 (75)
Q Consensus 52 EMpdeMsd~~~D 63 (75)
.||++|..+..+
T Consensus 10 DM~~em~~~a~~ 21 (87)
T d3e2ba1 10 DMSEEMQQDAVD 21 (87)
T ss_dssp EECHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 466666655443
No 5
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]}
Probab=1.54 E-value=4.3e+02 Score=15.11 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=9.0
Q ss_pred cchhhhhhhhhhhh
Q psy2701 51 HEMPELMKGERLDL 64 (75)
Q Consensus 51 dEMpdeMsd~~~D~ 64 (75)
||=++++|+++.|.
T Consensus 4 hep~e~Ls~e~~d~ 17 (91)
T d1zpya1 4 FEPTQELSDETRDM 17 (91)
T ss_dssp CSCGGGSCHHHHHH
T ss_pred CCCHhHcCHHHHHH
Confidence 45566777776654
No 6
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=1.53 E-value=4.2e+02 Score=13.32 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=3.6
Q ss_pred hhhhhhhh
Q psy2701 53 MPELMKGE 60 (75)
Q Consensus 53 MpdeMsd~ 60 (75)
|.++++|.
T Consensus 3 m~e~~tD~ 10 (113)
T d1or7a2 3 MSEQLTDQ 10 (113)
T ss_dssp SHHHHHHH
T ss_pred CCcccCHH
Confidence 44444443
No 7
>d2cmea1 b.164.1.1 (A:9-98) Hypothetical protein 5 (ORF-9b) {SARS coronavirus [TaxId: 227859]}
Probab=1.46 E-value=3.9e+02 Score=15.22 Aligned_cols=6 Identities=83% Similarity=1.149 Sum_probs=3.5
Q ss_pred hhcccc
Q psy2701 19 EELPDL 24 (75)
Q Consensus 19 ~e~pd~ 24 (75)
+|+||+
T Consensus 66 eelpde 71 (78)
T d2cmea1 66 EELPDE 71 (78)
T ss_dssp GGSCSE
T ss_pred hhCCCc
Confidence 566665
No 8
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=1.05 E-value=3.6e+02 Score=15.16 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=6.0
Q ss_pred hhhhhhcccc
Q psy2701 62 LDLMKHEKSV 71 (75)
Q Consensus 62 ~D~M~heksv 71 (75)
..-|+||+++
T Consensus 34 k~y~~~Ek~~ 43 (149)
T d2etda1 34 KGYAAHEKEI 43 (149)
T ss_dssp HHHCTTCHHH
T ss_pred HHHHHHHHHH
Confidence 3456777753
No 9
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]}
Probab=1.01 E-value=7.1e+02 Score=13.46 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=0.0
Q ss_pred chhhhhhhhhhhhhh
Q psy2701 52 EMPELMKGERLDLMK 66 (75)
Q Consensus 52 EMpdeMsd~~~D~M~ 66 (75)
|+|++|..+-+.+.+
T Consensus 7 ~~pe~l~~~i~~~L~ 21 (124)
T d2fc3a1 7 EVPEDLAEKAYEAVK 21 (124)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
No 10
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=0.97 E-value=9.5e+02 Score=11.33 Aligned_cols=20 Identities=15% Similarity=0.554 Sum_probs=0.0
Q ss_pred cccchhhhhhhhhhhhhhhc
Q psy2701 49 MKHEMPELMKGERLDLMKHE 68 (75)
Q Consensus 49 M~dEMpdeMsd~~~D~M~he 68 (75)
.|.++++.+++=+...+.+.
T Consensus 1 IP~gL~~lL~~ftrevLR~q 20 (39)
T d2hwna1 1 IPPGLTELLQGYTVEVLRQQ 20 (39)
T ss_dssp CCTTHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHHC
Done!