RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2701
         (75 letters)



>gnl|CDD|238220 cd00374, RNase_T2, Ribonuclease T2 (RNase T2) is a widespread
          family of secreted RNases found in every organism
          examined thus far.  This family includes RNase Rh,
          RNase MC1, RNase LE, and self-incompatibility RNases
          (S-RNases).  Plant T2 RNases are expressed during leaf
          senescence in order to scavenge phosphate from
          ribonucleotides. They are also expressed in response to
          wounding or pathogen invasion. S-RNases are thought to
          prevent self-fertilization by acting as selective
          cytotoxins of "self" pollen.
          Length = 195

 Score = 28.6 bits (64), Expect = 0.20
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 17 MKEELPDLMKDEKPDLMKHE 36
          + +  PDLM  +     KHE
Sbjct: 67 LNKYWPDLMPGKDSSFWKHE 86



 Score = 27.8 bits (62), Expect = 0.45
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 33 MKHEMPDLMKDEKPDLMKHE 52
          +    PDLM  +     KHE
Sbjct: 67 LNKYWPDLMPGKDSSFWKHE 86


>gnl|CDD|237216 PRK12821, PRK12821, aspartyl/glutamyl-tRNA amidotransferase subunit
           C-like protein; Provisional.
          Length = 477

 Score = 27.9 bits (62), Expect = 0.36
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 6   PDLMKGEKPDLMKEELPDLMKDEKPDLMKHEMPDLMKDEKPDLMKHEMPELMKGERLDLM 65
           P ++KG K   + E     +K    DL     P     +K  L K E+ +L +    DL 
Sbjct: 348 PIMLKGFK-TELSETQTKGIKKSFSDLQSPLFPKHWTSKKQQLNKDELKKLARLVMFDLD 406

Query: 66  KHE 68
             E
Sbjct: 407 DAE 409


>gnl|CDD|114135 pfam05394, AvrB_AvrC, Avirulence protein.  This family consists of
           several avirulence proteins from Pseudomonas syringae
           and Xanthomonas campestris.
          Length = 326

 Score = 24.4 bits (53), Expect = 6.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 19  EELPDLMKDEKPDLMKHEMPDLMKDEKPDLMKH 51
             + D + D   DL +  + DLM   +P+++ H
Sbjct: 192 SAIRDRLADLYKDLRRQGLKDLMARGEPNMITH 224


>gnl|CDD|218921 pfam06167, MtfA, Phosphoenolpyruvate:glucose-phosphotransferase
           regulator.  MtfA (earlier known as YeeI) is a
           transcription factor A that binds Mlc (make large
           colonies), itself a repressor of glucose and hence a
           protein important in regulation of the
           phosphoenolpyruvate:glucose-phosphotransferase (ptsG)
           system, the major glucose transporter in E.coli. Mlc is
           a repressor of ptsG, and MtfA is found to bind and
           inactivate Mlc with high affinity. The membrane-bound
           protein EIICBGlc encoded by the ptsG gene is the major
           glucose transporter in Escherichia coli.
          Length = 248

 Score = 24.1 bits (53), Expect = 8.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 44  EKPDLMKHEMPEL 56
           EKP+L+  E P L
Sbjct: 227 EKPELLAREHPAL 239


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.309    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0731    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,916,176
Number of extensions: 309313
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 23
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.2 bits)