RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2701
         (75 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
          programmed cell death; HET: DTP; 6.90A {Drosophila
          melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 1.4
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 7  DLMKGEKPDLMKEELPDLMKDEKPDLMKHEMPDLMKDEKPDLMKHEMPELMK 58
          D   GE     K+ L         +    ++ D+    K  L K E+  ++ 
Sbjct: 8  DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP---KSILSKEEIDHIIM 56


>3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET: BGC; 1.15A
           {Uncultured bacterium} PDB: 3cmj_A 3fiz_A* 3fiy_A*
          Length = 465

 Score = 24.8 bits (55), Expect = 2.7
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 8   LMKGEKPDLMKEELPDLMKDEKPDLMK 34
           L++G+         P+L +   P+ M+
Sbjct: 275 LIRGQYNQATLMAYPNLPEFIAPEDMQ 301


>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
           cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
           {Azotobacter vinelandii}
          Length = 483

 Score = 24.8 bits (54), Expect = 3.5
 Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 18  KEELPDLMKDEKP---DLMKHEMPDLMKDEKPDLM 49
           K  + +LM D+     +     +   + + + D++
Sbjct: 371 KARIRELMGDDVKMLDEGNARVLLKTVDEYQADIL 405


>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
          protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
          PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
          Length = 100

 Score = 23.2 bits (50), Expect = 8.2
 Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 7  DLMKGEKPDLMKEELPDLMKDEK---PDLMKHEMPDLMKD 43
           + K     +MKE  P+ +        + +        K+
Sbjct: 25 KIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKN 64


>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur
           cluster, oxidoreductase, bacteriochlorophyll
           biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
           PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
          Length = 525

 Score = 23.6 bits (51), Expect = 9.2
 Identities = 4/39 (10%), Positives = 13/39 (33%)

Query: 11  GEKPDLMKEELPDLMKDEKPDLMKHEMPDLMKDEKPDLM 49
            E    ++    +   +        E+   ++   P+L+
Sbjct: 315 REMARPLRTAAAEYGLEALITDDYLEVEKAIEAAAPELI 353


>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
           fold domains, reductase, nitrogen fixing,
           oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
           vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
           1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
           3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
          Length = 492

 Score = 23.6 bits (51), Expect = 9.4
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 18  KEELPDLMKDEKP---DLMKHEMPDLMKDEKPDLM 49
            +     M D      D+  +E  + +K  KPDL+
Sbjct: 387 YDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKPDLI 421


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.309    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,155,623
Number of extensions: 58249
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 62
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.6 bits)