RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2701
         (75 letters)



>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa),
          calgizzarin s100c (s100a11) [TaxId: 9823]}
          Length = 95

 Score = 22.8 bits (49), Expect = 4.5
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 2  KEEKPDLMKGEKPDLMKEELPDLMKDEK-PDLMKHEMPDLMKD 43
                + K E    M  EL    +++K P ++   M  L  D
Sbjct: 22 DGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLD 64


>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 156

 Score = 22.9 bits (49), Expect = 5.0
 Identities = 5/41 (12%), Positives = 15/41 (36%)

Query: 32  LMKHEMPDLMKDEKPDLMKHEMPELMKGERLDLMKHEKSVR 72
           +    + + +        +     +M   R+D+   EK+ +
Sbjct: 116 ITPRVLSEAIASPDRAAARRAFEAMMTMGRIDIATIEKAFK 156


>d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
          s100p [TaxId: 9606]}
          Length = 94

 Score = 22.4 bits (48), Expect = 6.1
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 2  KEEKPDLMKGEKPDLMKEELPDLMKDEK-PDLMKHEMPDLMKD 43
          +     L KGE   LM++ELP  ++  K  D +   + DL  +
Sbjct: 22 EGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDAN 64


>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus),
          s100b [TaxId: 9913]}
          Length = 90

 Score = 22.0 bits (47), Expect = 7.2
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 2  KEEKPDLMKGEKPDLMKEELPDLMKDEK-PDLMKHEMPDLMKD 43
          + +K  L K E  +L+  EL   +++ K  +++   M  L  D
Sbjct: 22 EGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD 64


>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
           chain {Clostridium pasteurianum [TaxId: 1501]}
          Length = 525

 Score = 22.4 bits (47), Expect = 8.4
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 2   KEEKPDLMKGEKPDLMKEELPDLMKDEK---PDLMKHEMPDLMKDEKPDLM 49
           +++  +L K   P      +   M D      D+  H+M  +++  KPD+ 
Sbjct: 410 EDKVEELKKAGVPLSSYGGMMKEMHDGTILIDDMNHHDMEVVLEKLKPDMF 460


>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens),
          s100a9 (mrp14) [TaxId: 9606]}
          Length = 83

 Score = 21.6 bits (46), Expect = 9.4
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 2  KEEKPDLMKGEKPDLMKEELPDLMKDEK--PDLMKHEMPDLMKD 43
                L +GE  +L++++L + +K E     +++H M DL  +
Sbjct: 23 LGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTN 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,661
Number of extensions: 11094
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 29
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.0 bits)