BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2702
         (87 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C6KTD2|HKNMT_PLAF7 Putative histone-lysine N-methyltransferase PFF1440w OS=Plasmodium
            falciparum (isolate 3D7) GN=PFF1440w PE=3 SV=1
          Length = 6753

 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 8    EKPDLMQEGKPDLMKDELPALMKEEKPDLMKDAKYDLMKNELLDLMQKEKPDLVQEEMSD 67
            EK +LM+    ++  D+   ++  +  D++ +   D++ N+  D++  +  D++  + SD
Sbjct: 4348 EKENLME----NVTNDKTSDIINNKTSDIINNKTSDIINNKTSDIINNKTSDIINNKTSD 4403

Query: 68   LMKHKMSVLMKDE 80
            ++ +K S ++ D+
Sbjct: 4404 IINNKTSDIINDK 4416


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.130    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,679,513
Number of Sequences: 539616
Number of extensions: 1274928
Number of successful extensions: 4834
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4671
Number of HSP's gapped (non-prelim): 156
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)