Query psy2702
Match_columns 87
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 23:02:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yxh_A MAZG-related protein; T 38.5 29 0.00098 21.7 3.0 28 47-74 36-63 (116)
2 1vmg_A Hypothetical protein SS 37.5 29 0.00099 21.4 2.9 24 48-71 50-73 (95)
3 2q5z_A MAZG, hypothetical prot 35.8 34 0.0012 20.9 3.0 25 47-71 52-85 (114)
4 2q73_A MAZG, hypothetical prot 33.7 40 0.0014 20.0 3.0 25 47-71 32-65 (100)
5 2oie_A RS21-C6; helix, hydrola 29.4 36 0.0012 20.2 2.3 25 47-71 50-87 (111)
6 2xc7_A Phosphorylated adapter 21.0 44 0.0015 21.7 1.6 41 14-54 4-44 (104)
7 4a3n_A Transcription factor SO 20.1 1.1E+02 0.0037 16.1 2.9 32 42-73 10-41 (71)
8 4hyz_A Uncharacterized protein 19.6 39 0.0013 20.7 1.1 29 47-75 21-49 (114)
9 2gta_A Hypothetical protein YP 18.2 1.2E+02 0.004 18.5 3.1 25 47-71 39-73 (119)
10 3u2b_C Transcription factor SO 18.0 1.3E+02 0.0044 16.3 3.0 32 42-73 10-41 (79)
No 1
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics; 2.00A {Thermotoga maritima}
Probab=38.50 E-value=29 Score=21.67 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=21.9
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHhhhh
Q psy2702 47 NELLDLMQKEKPDLVQEEMSDLMKHKMS 74 (87)
Q Consensus 47 nelldlmqkekpdlvqeemsdlmkhkms 74 (87)
.|+.+.+++...+-+.+|+.|++=+-..
T Consensus 36 ~El~eai~~~d~~~l~eElGDlLf~vv~ 63 (116)
T 2yxh_A 36 EEVAEAVKKNDLANLEEEIGDMIYDALL 63 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4677777888888899999999876543
No 2
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=37.47 E-value=29 Score=21.37 Aligned_cols=24 Identities=29% Similarity=0.500 Sum_probs=17.8
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHh
Q psy2702 48 ELLDLMQKEKPDLVQEEMSDLMKH 71 (87)
Q Consensus 48 elldlmqkekpdlvqeemsdlmkh 71 (87)
||.+.+.+...+-+.+|+.|++--
T Consensus 50 El~eai~~~~~~~i~eELgDvLf~ 73 (95)
T 1vmg_A 50 ELAEALLSNNLDSIQEELADVIAW 73 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666677778899999998753
No 3
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=35.78 E-value=34 Score=20.93 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=17.7
Q ss_pred HHHHHHHHhhC---------chhHHHHHHHHHHh
Q psy2702 47 NELLDLMQKEK---------PDLVQEEMSDLMKH 71 (87)
Q Consensus 47 nelldlmqkek---------pdlvqeemsdlmkh 71 (87)
.||.+.+++.. .+-+.+|+.|++--
T Consensus 52 gEl~e~i~~~~~~~~~~~~~~~~l~eELgDvL~~ 85 (114)
T 2q5z_A 52 GELSESIRKGKSGQPTLDELKGSVAEELYDVLYY 85 (114)
T ss_dssp HHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccccchHHHHHHHHHHHHHH
Confidence 45666666543 67789999998754
No 4
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=33.75 E-value=40 Score=20.01 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=16.9
Q ss_pred HHHHHHHHhhC---------chhHHHHHHHHHHh
Q psy2702 47 NELLDLMQKEK---------PDLVQEEMSDLMKH 71 (87)
Q Consensus 47 nelldlmqkek---------pdlvqeemsdlmkh 71 (87)
.||.+.+++.. .+-+.+|+.|++--
T Consensus 32 gEl~e~~~~~~~~~~~~~~~~~~i~eELgDvL~~ 65 (100)
T 2q73_A 32 GELSESIRKGKSGQPTLDELKGSVAEELYDVLYY 65 (100)
T ss_dssp HHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccchhHHHHHHHHHHHHHH
Confidence 45666666543 26789999998754
No 5
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=29.36 E-value=36 Score=20.19 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=17.0
Q ss_pred HHHHHHHHh-------------hCchhHHHHHHHHHHh
Q psy2702 47 NELLDLMQK-------------EKPDLVQEEMSDLMKH 71 (87)
Q Consensus 47 nelldlmqk-------------ekpdlvqeemsdlmkh 71 (87)
.||.+.+++ ...+-+.+|+.|++-.
T Consensus 50 gEl~e~~~~~~~~~~~~~~~~~~~~~~l~eElgDvL~~ 87 (111)
T 2oie_A 50 GELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIY 87 (111)
T ss_dssp HHHHHHHHTCCCCSSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Confidence 466777773 2345688999998754
No 6
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=20.96 E-value=44 Score=21.66 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=31.6
Q ss_pred hcCCCCccchhhhhhhhhcccchhhHHhhhhhHHHHHHHHH
Q psy2702 14 QEGKPDLMKDELPALMKEEKPDLMKDAKYDLMKNELLDLMQ 54 (87)
Q Consensus 14 qegkpdlmkdelpalmkeekpdlmkdakydlmknelldlmq 54 (87)
.+..|+-+-+++-+.++|.|.+|+..+-.-|=....++|++
T Consensus 4 ~~~~~~~va~~ia~~L~E~k~~li~rvV~~lG~~~~~~ll~ 44 (104)
T 2xc7_A 4 AEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLM 44 (104)
T ss_dssp CCCCHHHHHHHHHHHTTCTTHHHHHHHHHHHCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888999999999999988877776666666654
No 7
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=20.12 E-value=1.1e+02 Score=16.09 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHhhCchhHHHHHHHHHHhhh
Q psy2702 42 YDLMKNELLDLMQKEKPDLVQEEMSDLMKHKM 73 (87)
Q Consensus 42 ydlmknelldlmqkekpdlvqeemsdlmkhkm 73 (87)
|-+..++...-+..+.|++-..|+|.++...-
T Consensus 10 f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~W 41 (71)
T 4a3n_A 10 FMVWAKDERKRLAQQNPDLHNAELSKMLGKSW 41 (71)
T ss_dssp HHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 45556666666777778877777776665443
No 8
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=19.59 E-value=39 Score=20.70 Aligned_cols=29 Identities=7% Similarity=0.148 Sum_probs=23.0
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHhhhhh
Q psy2702 47 NELLDLMQKEKPDLVQEEMSDLMKHKMSV 75 (87)
Q Consensus 47 nelldlmqkekpdlvqeemsdlmkhkmsv 75 (87)
.++++++...+-|-+++.+++-||.+++.
T Consensus 21 ~~~I~~l~~~dy~~i~~~~~~~lk~~Lt~ 49 (114)
T 4hyz_A 21 MEDIEIAQSKDYESWKSRFTKDLQSSLTE 49 (114)
T ss_dssp HHHHHHHHTTCHHHHHTTBCHHHHTTCCH
T ss_pred HHHHHHHHhCCHHHHHHHhCHHHHhhCCH
Confidence 47888888888888888888888776654
No 9
>2gta_A Hypothetical protein YPJD; pyrophosphatase, NESG, structural genomics, PSI, protein structure initiative; 2.90A {Bacillus subtilis} SCOP: a.204.1.2
Probab=18.22 E-value=1.2e+02 Score=18.52 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=16.7
Q ss_pred HHHHHHHHhh----------CchhHHHHHHHHHHh
Q psy2702 47 NELLDLMQKE----------KPDLVQEEMSDLMKH 71 (87)
Q Consensus 47 nelldlmqke----------kpdlvqeemsdlmkh 71 (87)
.||.+.+++. ..+-+.+|+.|++--
T Consensus 39 gEl~eai~~~~~~~~~~~~~~~~~l~eELGDvLf~ 73 (119)
T 2gta_A 39 GELAREVNHRYGEKPKKATEDDKSMEEEIGDVLFV 73 (119)
T ss_dssp HHHHHHHHHHTSSSCCCSSCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 4667777651 125789999998743
No 10
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=17.97 E-value=1.3e+02 Score=16.28 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHhhCchhHHHHHHHHHHhhh
Q psy2702 42 YDLMKNELLDLMQKEKPDLVQEEMSDLMKHKM 73 (87)
Q Consensus 42 ydlmknelldlmqkekpdlvqeemsdlmkhkm 73 (87)
|-|..++...-+..+.|++-..|+|.++...-
T Consensus 10 f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~W 41 (79)
T 3u2b_C 10 FMVWSQIERRKIMEQSPDMHNAEISKRLGKRW 41 (79)
T ss_dssp HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHH
Confidence 44555566666666777777777776655433
Done!