RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2702
         (87 letters)



>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 511

 Score = 24.3 bits (52), Expect = 2.6
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 12  LMQEGKPDLMKDELPA-----LMKEEKPDLMKDAKYDLMKNELLDLMQK 55
           L         KD LP         ++K   ++ A  +L+KN + + + K
Sbjct: 462 LSGFSNYSFEKDVLPEELKKLSTLKKKLKFIERADVELVKNAIEEELAK 510


>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
          transcriptase homolog {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 236

 Score = 23.9 bits (50), Expect = 2.9
 Identities = 4/20 (20%), Positives = 10/20 (50%), Gaps = 2/20 (10%)

Query: 46 KNELLDLMQKEKPDLV--QE 63
          ++ L   ++ + P +   QE
Sbjct: 22 RHRLASWIKSQDPSVCCIQE 41


>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1
          retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId:
          7091]}
          Length = 228

 Score = 23.9 bits (50), Expect = 2.9
 Identities = 6/19 (31%), Positives = 7/19 (36%), Gaps = 2/19 (10%)

Query: 47 NELLDLMQKEKPD--LVQE 63
           EL       K    L+QE
Sbjct: 18 AELAIEAATRKAAIALIQE 36


>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
          ligase {Enterococcus faecalis [TaxId: 1351]}
          Length = 313

 Score = 23.8 bits (50), Expect = 3.6
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 36 LMKDAKYDLMKNELLDLMQKEKPDLVQEE 64
           ++D  YD +  EL+D+ + E PDL+  +
Sbjct: 32 SVEDYVYDRLYKELVDI-ETEFPDLITPD 59


>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent
          DNA ligase {Thermus filiformis [TaxId: 276]}
          Length = 314

 Score = 22.9 bits (48), Expect = 6.4
 Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 36 LMKDAKYDLMKNELLDLMQKEKPDLVQEE 64
           + DA+YD +  EL +L ++  P+    +
Sbjct: 31 EISDAEYDRLLRELKEL-EERFPEFKSPD 58


>d1pc6a_ d.262.1.1 (A:) NinB {Bacteriophage lambda [TaxId: 10710]}
          Length = 141

 Score = 22.5 bits (48), Expect = 7.4
 Identities = 5/43 (11%), Positives = 13/43 (30%)

Query: 30 KEEKPDLMKDAKYDLMKNELLDLMQKEKPDLVQEEMSDLMKHK 72
          +E    L ++ K      ++   ++     L  E    +    
Sbjct: 37 QERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAESWKCVFTAA 79


>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
          IlvH {Nitrosomonas europaea [TaxId: 915]}
          Length = 77

 Score = 21.9 bits (47), Expect = 8.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 69 MKHKMSVLMKDEKSV 83
          M+H +S+LM++E   
Sbjct: 1  MRHIISLLMENEAGA 15


>d1wfra_ d.106.1.1 (A:) Hypothetical protein TT1886 (TTHA0401)
           {Thermus thermophilus [TaxId: 274]}
          Length = 143

 Score = 22.2 bits (47), Expect = 9.5
 Identities = 8/43 (18%), Positives = 21/43 (48%)

Query: 13  MQEGKPDLMKDELPALMKEEKPDLMKDAKYDLMKNELLDLMQK 55
           + EG+ + +   +  L++ +K  +   A Y     EL+ + ++
Sbjct: 93  VLEGRLEPLSALMRGLLELKKGTIAALAPYAQAAQELVKVARE 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.130    0.347 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 304,280
Number of extensions: 12706
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 34
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.0 bits)