BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2704
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 62/64 (96%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRRYRTTF+++QLEELERAF KTHYPDVF REELA+R+DLTEARVQVWFQNRRAKWR
Sbjct: 329 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWR 388
Query: 171 KQEK 174
K+EK
Sbjct: 389 KREK 392
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 62/64 (96%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRRYRTTF+++QLEELERAF KTHYPDVF REELA+R+DLTEARVQVWFQNRRAKWR
Sbjct: 325 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWR 384
Query: 171 KQEK 174
K+EK
Sbjct: 385 KREK 388
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 69/82 (84%), Gaps = 2/82 (2%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRRYRTTF+++QLEELERAF KTHYPDVF REELA+R+DLTEARVQVWFQNRRAKWR
Sbjct: 212 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWR 271
Query: 171 KQEKL-VSKQPQEL-FSSPLQS 190
K+EK V P L F PL +
Sbjct: 272 KREKAGVQAHPTGLPFPGPLAA 293
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 62/64 (96%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRRYRTTF+++QLEELERAF KTHYPDVF REELA+R+DLTEARVQVWFQNRRAKWR
Sbjct: 327 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWR 386
Query: 171 KQEK 174
K+EK
Sbjct: 387 KREK 390
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 75/94 (79%), Gaps = 4/94 (4%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRRYRTTF+++QLEELERAF KTHYPDVF REELA+R+DLTEARVQVWFQNRRAKWR
Sbjct: 209 KRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQVWFQNRRAKWR 268
Query: 171 KQEKLVSKQPQELFSSPLQSP--ASPSPDLNVIS 202
K+EKL QP+ L P P P D N++S
Sbjct: 269 KREKL-GLQPR-LHPHPHFGPILGGPISDSNLVS 300
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 62/65 (95%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRRYRTTF++FQLEELE+AF +THYPDVF REELA++I LTEAR+QVWFQNRRAKWR
Sbjct: 82 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWR 141
Query: 171 KQEKL 175
KQEK+
Sbjct: 142 KQEKV 146
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 64/81 (79%)
Query: 99 PTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARV 158
P+P ++ K K+RR RTTF+++QLEELE+ F KTHYPDV+ RE+LA+R DLTEARV
Sbjct: 185 PSPMEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARV 244
Query: 159 QVWFQNRRAKWRKQEKLVSKQ 179
QVWFQNRRAKWRK+E+ Q
Sbjct: 245 QVWFQNRRAKWRKRERFGQMQ 265
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 65/84 (77%)
Query: 96 SPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTE 155
S P+P ++ K K+RR RTTF+++QLEELE+ F KTHYPDV+ RE+LA+R DLTE
Sbjct: 196 SDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTE 255
Query: 156 ARVQVWFQNRRAKWRKQEKLVSKQ 179
ARVQVWFQNRRAKWRK+E+ Q
Sbjct: 256 ARVQVWFQNRRAKWRKRERFGQMQ 279
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 111/201 (55%), Gaps = 21/201 (10%)
Query: 25 NNAYSISGLLNTPNQNGDPLLSGFTLPISQMPPVIVTTLQQSCSANFQPVM--KYNPSTS 82
N Y+I +L P+Q +L+ + + + ++ S N + ++ K P S
Sbjct: 2 NKRYNIDDILGIPDQKS-LMLNNYQHQSVVENEICDSYQKKDISVNNRELLMVKRCPKDS 60
Query: 83 PQVSPSSPPTLCFSPTPTPESPPTQQTG-KRKQRRYRTTFSNFQLEELERAFHKTHYPDV 141
+ SP+ S ES P Q + +K RR RTTF+ +QL ELERAF K+HYPDV
Sbjct: 61 SEQSPA------ISEADETESSPDQLSNCNKKHRRNRTTFTTYQLHELERAFEKSHYPDV 114
Query: 142 FFREELALRIDLTEARVQVWFQNRRAKWRKQEKLVSKQP----QELFSSPLQS------P 191
+ REELA++I L E RVQVWFQNRRAKWR+QEK+ + QE+F + +S P
Sbjct: 115 YSREELAMKISLPEVRVQVWFQNRRAKWRRQEKIEAANHTHNLQEVFPNVGKSLTSSLFP 174
Query: 192 ASPSPDLNVISVPAASPVPHF 212
A+P P LN +S+P+ F
Sbjct: 175 ANPYPFLN-MSLPSVESTSFF 194
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 64/81 (79%)
Query: 99 PTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARV 158
P+P ++ K K+RR RTTF+++QLEELE+ F KTHYPDV+ RE+LA+R DLTEARV
Sbjct: 187 PSPLEKTDSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARV 246
Query: 159 QVWFQNRRAKWRKQEKLVSKQ 179
QVWFQNRRAKWRK+E+ Q
Sbjct: 247 QVWFQNRRAKWRKRERFGQMQ 267
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 100 TPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQ 159
+P+S ++ GK+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA +++L E RVQ
Sbjct: 123 SPKSIKEEEHGKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQ 182
Query: 160 VWFQNRRAKWRKQEKLVSKQPQELFSSPLQS 190
VWFQNRRAKWR+QEK+ + +L SP+ S
Sbjct: 183 VWFQNRRAKWRRQEKMDTST-MKLHDSPMLS 212
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni GN=SMOX-3
PE=2 SV=1
Length = 288
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 61/66 (92%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF++ QL+ELERAF +THYPD++ RE+LALRIDLTEARVQVWFQNRRAK+R
Sbjct: 1 KRKQRRIRTTFTSLQLKELERAFQETHYPDIYTREDLALRIDLTEARVQVWFQNRRAKFR 60
Query: 171 KQEKLV 176
K E+++
Sbjct: 61 KTERVI 66
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 58/69 (84%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
K K+RR RTTFS FQLEELE+ F KTHYPDV+ RE+LALR DLTEARVQVWFQNRRAKWR
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
Query: 171 KQEKLVSKQ 179
K+E+ Q
Sbjct: 210 KRERYGKMQ 218
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 58/69 (84%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
K K+RR RTTFS FQLEELE+ F KTHYPDV+ RE+LALR DLTEARVQVWFQNRRAKWR
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
Query: 171 KQEKLVSKQ 179
K+E+ Q
Sbjct: 210 KRERYGKIQ 218
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 74/106 (69%), Gaps = 10/106 (9%)
Query: 104 PPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQ 163
P ++ K+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA++++L E RVQVWFQ
Sbjct: 112 PSDEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQ 171
Query: 164 NRRAKWRKQEKLVSKQPQELFSSPLQSPASPSPDLNVISVPAASPV 209
NRRAKWR+QEKL E+ S LQ SP L+ P A+PV
Sbjct: 172 NRRAKWRRQEKL------EVSSMKLQD----SPILSFSRSPQAAPV 207
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 96 SPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTE 155
S + +P+S +Q K+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA++++L E
Sbjct: 120 SDSKSPDSADGEQP-KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 178
Query: 156 ARVQVWFQNRRAKWRKQEKLVSKQPQELFSSPLQSPASPS 195
RVQVWFQNRRAKWR+QEK + +L SP+ S PS
Sbjct: 179 VRVQVWFQNRRAKWRRQEK-IDASTMKLHDSPMLSFNRPS 217
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 59/64 (92%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF++ QL+ELER F +THYPD++ REELAL+IDLTEARVQVWFQNRRAK+R
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
Query: 171 KQEK 174
KQE+
Sbjct: 155 KQER 158
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 59/64 (92%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF++ QL+ELER F +THYPD++ REELAL+IDLTEARVQVWFQNRRAK+R
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
Query: 171 KQEK 174
KQE+
Sbjct: 155 KQER 158
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 2/111 (1%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
K+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA++++L E RVQVWFQNRRAKWR
Sbjct: 139 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWR 198
Query: 171 KQEKLVSKQPQELFSSPLQSPASPSPDLNVISVPAASPV-PHFSPPVCSTS 220
+QEK+ +L SP+ S P NV + + P+ P + P+ ST+
Sbjct: 199 RQEKM-DASAVKLHDSPMLSFNRPPMHTNVGPMSNSLPLDPWLTSPLTSTT 248
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 56/64 (87%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
K+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA++++L E RVQVWFQNRRAKWR
Sbjct: 525 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWR 584
Query: 171 KQEK 174
+QEK
Sbjct: 585 RQEK 588
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Query: 105 PTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164
P + K+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA++++L E RVQVWFQN
Sbjct: 126 PDEDQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQN 185
Query: 165 RRAKWRKQEKLVSKQPQELFSSPLQSPASPSPDLNVISVPAASPV-PHFSPPVCSTSSFY 223
RRAKWR+QEK+ + +L SP++S P NV + + P+ P S P+ S + +
Sbjct: 186 RRAKWRRQEKMDTGT-MKLHDSPIRSFNRPPMAPNVGPMSNSLPLDPWLSSPLSSATPMH 244
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 64/87 (73%), Gaps = 4/87 (4%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
K+K RR RTTF+ FQL ELERAF K+HYPDV+ REELAL+++L E RVQVWFQNRRAKWR
Sbjct: 103 KKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWR 162
Query: 171 KQEKL----VSKQPQELFSSPLQSPAS 193
+QEKL + Q + S P P S
Sbjct: 163 RQEKLEVSSIKLQESSMLSIPRSGPLS 189
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 82/122 (67%), Gaps = 2/122 (1%)
Query: 100 TPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQ 159
TP + ++ K+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA++++L E RVQ
Sbjct: 22 TPPAAAEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 81
Query: 160 VWFQNRRAKWRKQEKLVSKQPQELFSSPLQSPASPSPDLNVISVPAASPV-PHFSPPVCS 218
VWFQNRRAKWR+QEK+ + +L +P+ S P NV + + P+ P + P+ S
Sbjct: 82 VWFQNRRAKWRRQEKMEASS-MKLHDTPMLSFNRPPMTANVGPMSNSLPLDPWLTSPISS 140
Query: 219 TS 220
+
Sbjct: 141 AT 142
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 59/69 (85%)
Query: 107 QQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRR 166
+Q K+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA++++L E RVQVWFQNRR
Sbjct: 123 EQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRR 182
Query: 167 AKWRKQEKL 175
AKWR+QEKL
Sbjct: 183 AKWRRQEKL 191
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 59/64 (92%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF++ QL+ELER F +THYPD++ REELAL+IDLTEARVQVWFQNRRAK+R
Sbjct: 87 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146
Query: 171 KQEK 174
KQE+
Sbjct: 147 KQER 150
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
K+RR+RTTF++ QLEELE+ F KTHYPDV+ RE+LALR +LTEARVQVWFQNRRAKWRK+
Sbjct: 140 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 199
Query: 173 EKLVS-KQPQELFSSPLQSPASPSPD 197
E+ +Q + F++ P D
Sbjct: 200 ERYGQIQQAKSHFAATYDISVLPRAD 225
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 59/69 (85%)
Query: 107 QQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRR 166
+Q K+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA++++L E RVQVWFQNRR
Sbjct: 123 EQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRR 182
Query: 167 AKWRKQEKL 175
AKWR+QEKL
Sbjct: 183 AKWRRQEKL 191
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 59/64 (92%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF++ QL+ELER F +THYPD++ REELAL+IDLTEARVQVWFQNRRAK+R
Sbjct: 87 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146
Query: 171 KQEK 174
KQE+
Sbjct: 147 KQER 150
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 59/64 (92%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF++ QL+ELER F +THYPD++ REELAL+IDLTEARVQVWFQNRRAK+R
Sbjct: 87 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146
Query: 171 KQEK 174
KQE+
Sbjct: 147 KQER 150
>sp|Q50D79|UNC4_DANRE Homeobox protein unc-4 homolog OS=Danio rerio GN=uncx PE=2 SV=2
Length = 470
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 80/133 (60%), Gaps = 14/133 (10%)
Query: 45 LSGFTL-PISQMPPVIVTTLQQSCS---ANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPT 100
+SG L + +P I L SCS AN P++ + V+ S L P
Sbjct: 38 ISGHQLQSAAAVPFSIDGLLNGSCSGSVANSNPLL----GSGCGVNGDSQYKLGDGGDPD 93
Query: 101 PESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQV 160
ESP K+RR RT F+ +QLEELE+A +++HYPDVF RE LALR+DL E+RVQV
Sbjct: 94 KESPGC------KRRRTRTNFTGWQLEELEKASNESHYPDVFMREALALRLDLVESRVQV 147
Query: 161 WFQNRRAKWRKQE 173
WFQNRRAKWRK+E
Sbjct: 148 WFQNRRAKWRKKE 160
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 57/62 (91%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
K+RR+RTTF++ QLEELE+ F KTHYPDV+ RE+LALR +LTEARVQVWFQNRRAKWRK+
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
Query: 173 EK 174
E+
Sbjct: 191 ER 192
>sp|Q8C8B0|ALX1_MOUSE ALX homeobox protein 1 OS=Mus musculus GN=Alx1 PE=1 SV=1
Length = 326
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 57/62 (91%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
K+RR+RTTF++ QLEELE+ F KTHYPDV+ RE+LALR +LTEARVQVWFQNRRAKWRK+
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
Query: 173 EK 174
E+
Sbjct: 191 ER 192
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 57/62 (91%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
K+RR+RTTF++ QLEELE+ F KTHYPDV+ RE+LALR +LTEARVQVWFQNRRAKWRK+
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
Query: 173 EK 174
E+
Sbjct: 191 ER 192
>sp|O08934|UNC4_MOUSE Homeobox protein unc-4 homolog OS=Mus musculus GN=Uncx PE=2 SV=2
Length = 530
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 59/69 (85%)
Query: 105 PTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164
P +++ K+RR RT F+ +QLEELE+AF+++HYPDVF RE LALR+DL E+RVQVWFQN
Sbjct: 100 PDKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQN 159
Query: 165 RRAKWRKQE 173
RRAKWRK+E
Sbjct: 160 RRAKWRKKE 168
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 56/65 (86%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
K+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA +++L E RVQVWFQNRRAKWR
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWR 192
Query: 171 KQEKL 175
+QEKL
Sbjct: 193 RQEKL 197
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 56/65 (86%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
K+K RR RTTF+ +QL ELERAF K+HYPDV+ REELA +++L E RVQVWFQNRRAKWR
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWR 193
Query: 171 KQEKL 175
+QEKL
Sbjct: 194 RQEKL 198
>sp|A6NJT0|UNC4_HUMAN Homeobox protein unc-4 homolog OS=Homo sapiens GN=UNCX PE=2 SV=1
Length = 531
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 76/124 (61%), Gaps = 14/124 (11%)
Query: 55 MPPVIVTTLQQSCSA-----NFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQT 109
+P I L SC+A N P++ P+ P L S P ESP
Sbjct: 50 VPFSIDGLLGGSCAAAASVVNPTPLL---PAACGVGGDGQPFKLSDSGDPDKESPGC--- 103
Query: 110 GKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169
K+RR RT F+ +QLEELE+AF+++HYPDVF RE LALR+DL E+RVQVWFQNRRAKW
Sbjct: 104 ---KRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKW 160
Query: 170 RKQE 173
RK+E
Sbjct: 161 RKKE 164
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
PE=2 SV=1
Length = 263
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 57/69 (82%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
+RKQRR RTTF+ QLE LE F +THYPDVF REELA++I+LTEARVQVWFQNRRAKWR
Sbjct: 30 RRKQRRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 89
Query: 171 KQEKLVSKQ 179
K E+ S Q
Sbjct: 90 KTERGASDQ 98
>sp|P97830|UNC4_RAT Homeobox protein unc-4 homolog OS=Rattus norvegicus GN=Uncx PE=2
SV=1
Length = 530
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 59/69 (85%)
Query: 105 PTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164
P +++ K+RR RT F+ +QLEELE+AF+++HYPDVF RE LA+R+DL E+RVQVWFQN
Sbjct: 100 PDKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALAVRLDLVESRVQVWFQN 159
Query: 165 RRAKWRKQE 173
RRAKWRK+E
Sbjct: 160 RRAKWRKKE 168
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 57/69 (82%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
+RKQRR RTTF+ QLE LE F +THYPDVF REELA++I+LTEARVQVWFQNRRAKWR
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 89
Query: 171 KQEKLVSKQ 179
K E+ S Q
Sbjct: 90 KTERGASDQ 98
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Query: 77 YNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKT 136
Y P + PS P L P ++ K+K RR RTTF+ +QL ELERAF K+
Sbjct: 101 YCPKEPGEARPS--PGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKS 158
Query: 137 HYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175
HYPDV+ REELA +++L E RVQVWFQNRRAKWR+QEKL
Sbjct: 159 HYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKL 197
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 57/69 (82%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
+RKQRR RTTF+ QLE LE F +THYPDVF REELA++I+LTEARVQVWFQNRRAKWR
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 89
Query: 171 KQEKLVSKQ 179
K E+ S Q
Sbjct: 90 KTERGASDQ 98
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 53/62 (85%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF+ QLEELERAF +THYPD++ REELA R LTEARVQVWF NRRA+WR
Sbjct: 193 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 252
Query: 171 KQ 172
KQ
Sbjct: 253 KQ 254
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 53/62 (85%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF+ QLEELERAF +THYPD++ REELA R LTEARVQVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 171 KQ 172
KQ
Sbjct: 276 KQ 277
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 53/62 (85%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF+ QLEELERAF +THYPD++ REELA R LTEARVQVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 171 KQ 172
KQ
Sbjct: 276 KQ 277
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 53/62 (85%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF+ QLEELERAF +THYPD++ REELA R LTEARVQVWF NRRA+WR
Sbjct: 217 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 276
Query: 171 KQ 172
KQ
Sbjct: 277 KQ 278
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 53/62 (85%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF+ QLEELERAF +THYPD++ REELA R LTEARVQVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 171 KQ 172
KQ
Sbjct: 276 KQ 277
>sp|P29506|UNC4_CAEEL Homeobox protein unc-4 OS=Caenorhabditis elegans GN=unc-4 PE=1 SV=2
Length = 252
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 72/105 (68%), Gaps = 2/105 (1%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
K+RR RT FS +QLEELE AF +HYPDVF RE LA+R+DL E+RVQVWFQNRRAKWRK+
Sbjct: 87 KRRRTRTNFSGWQLEELESAFEASHYPDVFMREALAMRLDLLESRVQVWFQNRRAKWRKR 146
Query: 173 E--KLVSKQPQELFSSPLQSPASPSPDLNVISVPAASPVPHFSPP 215
E + S + ++ +++ A P+ ++ S+ A S VP P
Sbjct: 147 EQNRNGSSEIKKDDGEQMETKALPTFPFSIDSILAVSRVPRGRRP 191
>sp|Q90277|VSX1_CARAU Visual system homeobox 1 OS=Carassius auratus GN=vsx1 PE=1 SV=1
Length = 341
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 57/68 (83%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRK+RR+RT F++ QLEELE+AFH+ HYPDV+ RE LA++ +L E R+QVWFQNRRAKWR
Sbjct: 145 KRKKRRHRTVFTSHQLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
Query: 171 KQEKLVSK 178
K+EK +
Sbjct: 205 KREKCWGR 212
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 53/62 (85%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
KRKQRR RTTF+ QLEELE+AF +THYPD++ REELA R LTEARVQVWF NRRA+WR
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273
Query: 171 KQ 172
KQ
Sbjct: 274 KQ 275
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,750,033
Number of Sequences: 539616
Number of extensions: 4775497
Number of successful extensions: 22998
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 19235
Number of HSP's gapped (non-prelim): 3591
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)