Query psy2704
Match_columns 256
No_of_seqs 315 out of 1464
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 23:05:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 6.2E-21 2.1E-25 141.8 7.1 64 110-173 13-76 (80)
2 2cue_A Paired box protein PAX6 99.8 1.3E-20 4.3E-25 140.1 8.6 68 112-179 5-72 (80)
3 2kt0_A Nanog, homeobox protein 99.8 7.1E-21 2.4E-25 142.5 7.1 65 110-174 18-82 (84)
4 1puf_A HOX-1.7, homeobox prote 99.8 2.1E-20 7E-25 138.1 8.9 69 108-176 7-75 (77)
5 2dms_A Homeobox protein OTX2; 99.8 1.2E-20 4.1E-25 140.2 7.4 65 111-175 4-68 (80)
6 1nk2_P Homeobox protein VND; h 99.8 2.6E-20 8.8E-25 137.5 8.4 66 110-175 5-70 (77)
7 2da3_A Alpha-fetoprotein enhan 99.8 1.2E-20 4.2E-25 139.8 6.7 63 111-173 14-76 (80)
8 2dmq_A LIM/homeobox protein LH 99.8 4.1E-20 1.4E-24 137.1 8.6 64 112-175 5-68 (80)
9 3a01_A Homeodomain-containing 99.8 4.7E-20 1.6E-24 141.1 8.5 69 109-177 12-80 (93)
10 2dmu_A Homeobox protein goosec 99.8 3.2E-20 1.1E-24 134.5 7.1 63 112-174 5-67 (70)
11 2cra_A Homeobox protein HOX-B1 99.8 1.7E-20 5.8E-25 136.0 5.5 63 111-173 4-66 (70)
12 2m0c_A Homeobox protein arista 99.8 2E-20 6.8E-25 136.9 5.8 67 111-177 6-72 (75)
13 2h1k_A IPF-1, pancreatic and d 99.8 2.9E-20 1E-24 132.1 6.4 61 113-173 2-62 (63)
14 1ftt_A TTF-1 HD, thyroid trans 99.8 3.1E-20 1E-24 134.0 6.4 63 114-176 2-64 (68)
15 2vi6_A Homeobox protein nanog; 99.8 1.7E-20 5.8E-25 132.8 4.9 60 113-172 2-61 (62)
16 1wh5_A ZF-HD homeobox family p 99.8 2.6E-20 9.1E-25 138.8 6.2 61 111-171 14-78 (80)
17 1zq3_P PRD-4, homeotic bicoid 99.8 5E-20 1.7E-24 132.9 7.3 63 114-176 2-64 (68)
18 2da2_A Alpha-fetoprotein enhan 99.8 2.6E-20 9E-25 134.8 5.7 64 111-174 4-67 (70)
19 1fjl_A Paired protein; DNA-bin 99.8 6.2E-20 2.1E-24 136.6 7.6 65 111-175 15-79 (81)
20 2da1_A Alpha-fetoprotein enhan 99.8 2.7E-20 9.2E-25 134.8 5.3 64 111-174 4-67 (70)
21 2hdd_A Protein (engrailed home 99.8 4E-20 1.4E-24 130.5 6.1 58 114-171 3-60 (61)
22 2e1o_A Homeobox protein PRH; D 99.8 7.7E-20 2.6E-24 132.5 7.1 63 112-174 5-67 (70)
23 1ig7_A Homeotic protein MSX-1; 99.8 7.9E-20 2.7E-24 127.5 6.8 57 115-171 1-57 (58)
24 1ahd_P Antennapedia protein mu 99.8 5E-20 1.7E-24 132.9 5.6 61 114-174 2-62 (68)
25 1yz8_P Pituitary homeobox 2; D 99.8 3.4E-20 1.2E-24 133.7 4.6 63 113-175 2-64 (68)
26 2djn_A Homeobox protein DLX-5; 99.8 6E-20 2E-24 133.1 5.6 63 111-173 4-66 (70)
27 2l7z_A Homeobox protein HOX-A1 99.8 1.2E-19 4E-24 132.7 7.1 64 111-174 4-67 (73)
28 1jgg_A Segmentation protein EV 99.8 1.1E-19 3.7E-24 127.8 6.4 58 115-172 2-59 (60)
29 2da4_A Hypothetical protein DK 99.8 6.6E-20 2.2E-24 136.2 5.5 63 111-173 5-71 (80)
30 1b8i_A Ultrabithorax, protein 99.8 6.8E-20 2.3E-24 136.6 5.6 63 112-174 18-80 (81)
31 1bw5_A ISL-1HD, insulin gene e 99.8 5.9E-20 2E-24 131.6 4.9 62 113-174 2-63 (66)
32 1wh7_A ZF-HD homeobox family p 99.8 7.3E-20 2.5E-24 136.6 5.5 60 111-171 14-78 (80)
33 2r5y_A Homeotic protein sex co 99.8 7.2E-20 2.4E-24 138.4 5.4 62 112-173 26-87 (88)
34 2ecc_A Homeobox and leucine zi 99.8 1.6E-19 5.6E-24 133.3 6.7 63 117-179 6-68 (76)
35 2cuf_A FLJ21616 protein; homeo 99.8 2.5E-19 8.5E-24 137.3 7.8 65 111-175 4-83 (95)
36 2hi3_A Homeodomain-only protei 99.8 2.5E-19 8.5E-24 130.9 7.1 61 115-175 3-64 (73)
37 1akh_A Protein (mating-type pr 99.8 1.4E-19 4.7E-24 127.5 5.4 60 111-170 2-61 (61)
38 1uhs_A HOP, homeodomain only p 99.8 2.3E-19 7.9E-24 130.7 6.6 60 115-174 2-62 (72)
39 3a02_A Homeobox protein arista 99.8 1.8E-19 6E-24 126.8 5.6 58 117-174 2-59 (60)
40 3rkq_A Homeobox protein NKX-2. 99.8 2.8E-19 9.5E-24 124.3 6.0 57 114-170 2-58 (58)
41 2k40_A Homeobox expressed in E 99.8 1.8E-19 6E-24 129.5 5.1 61 114-174 1-61 (67)
42 1b72_A Protein (homeobox prote 99.8 2.7E-19 9.3E-24 137.6 6.4 64 112-175 32-95 (97)
43 1b72_B Protein (PBX1); homeodo 99.8 2.6E-19 8.8E-24 134.8 5.6 64 115-178 2-68 (87)
44 3a03_A T-cell leukemia homeobo 99.8 5.1E-19 1.8E-23 122.9 6.3 54 119-172 2-55 (56)
45 2ecb_A Zinc fingers and homeob 99.8 4.8E-19 1.6E-23 134.7 6.7 56 120-175 17-72 (89)
46 3nar_A ZHX1, zinc fingers and 99.8 4.5E-19 1.5E-23 136.2 5.5 66 111-176 22-87 (96)
47 2ly9_A Zinc fingers and homeob 99.8 7E-19 2.4E-23 128.6 6.0 62 113-174 5-66 (74)
48 2da5_A Zinc fingers and homeob 99.8 8.2E-19 2.8E-23 128.9 6.3 58 117-174 10-67 (75)
49 2dn0_A Zinc fingers and homeob 99.8 4.4E-19 1.5E-23 130.6 4.8 60 115-174 9-68 (76)
50 1x2n_A Homeobox protein pknox1 99.7 2E-18 6.8E-23 125.9 7.6 62 112-173 5-69 (73)
51 2da6_A Hepatocyte nuclear fact 99.7 4.9E-18 1.7E-22 131.9 9.4 68 111-178 3-91 (102)
52 1puf_B PRE-B-cell leukemia tra 99.7 1.6E-18 5.6E-23 126.4 6.3 62 114-175 1-65 (73)
53 2dmn_A Homeobox protein TGIF2L 99.7 4.5E-18 1.6E-22 127.4 8.0 63 112-174 5-70 (83)
54 1du6_A PBX1, homeobox protein 99.7 9.9E-19 3.4E-23 124.4 4.0 59 113-171 2-63 (64)
55 2dmp_A Zinc fingers and homeob 99.7 5.4E-18 1.8E-22 128.6 7.9 57 120-176 19-75 (89)
56 1k61_A Mating-type protein alp 99.7 4.9E-18 1.7E-22 119.2 6.1 55 118-172 2-59 (60)
57 2cqx_A LAG1 longevity assuranc 99.7 1.9E-18 6.4E-23 126.3 4.0 58 115-172 9-67 (72)
58 1wi3_A DNA-binding protein SAT 99.7 6.5E-18 2.2E-22 121.5 6.3 60 110-169 3-63 (71)
59 1e3o_C Octamer-binding transcr 99.7 3.1E-18 1.1E-22 143.0 5.1 62 111-172 98-159 (160)
60 2xsd_C POU domain, class 3, tr 99.7 3E-18 1E-22 143.8 4.6 64 111-174 96-159 (164)
61 1au7_A Protein PIT-1, GHF-1; c 99.7 4E-18 1.4E-22 140.5 4.9 62 111-172 84-145 (146)
62 1lfb_A Liver transcription fac 99.7 3E-18 1E-22 132.7 3.8 65 111-175 6-91 (99)
63 1mnm_C Protein (MAT alpha-2 tr 99.7 1E-17 3.5E-22 126.3 6.7 60 112-171 25-87 (87)
64 3nau_A Zinc fingers and homeob 99.7 1.2E-17 4.1E-22 119.8 6.0 52 122-173 12-63 (66)
65 3d1n_I POU domain, class 6, tr 99.7 1.2E-17 4.1E-22 138.1 6.7 60 112-171 91-150 (151)
66 1le8_B Mating-type protein alp 99.7 1.3E-17 4.4E-22 124.8 6.0 59 116-174 4-65 (83)
67 2l9r_A Homeobox protein NKX-3. 99.7 9.6E-18 3.3E-22 121.7 4.0 56 119-174 9-64 (69)
68 1x2m_A LAG1 longevity assuranc 99.7 2.1E-17 7.2E-22 118.2 4.0 48 124-171 10-58 (64)
69 2e19_A Transcription factor 8; 99.7 2.7E-17 9.2E-22 117.6 4.5 53 119-171 8-60 (64)
70 3l1p_A POU domain, class 5, tr 99.7 2.9E-17 9.9E-22 136.5 5.2 61 112-172 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.6 7E-17 2.4E-21 134.9 4.7 64 111-174 94-157 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 1.2E-15 4.2E-20 109.7 5.8 56 119-174 3-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 1.2E-15 3.9E-20 131.3 2.7 62 110-171 111-193 (194)
74 2da7_A Zinc finger homeobox pr 99.5 5E-14 1.7E-18 101.8 5.5 46 123-168 14-59 (71)
75 2h8r_A Hepatocyte nuclear fact 99.5 3.7E-14 1.3E-18 123.7 5.3 61 109-169 137-218 (221)
76 2lk2_A Homeobox protein TGIF1; 99.4 1.5E-13 5.2E-18 104.1 6.8 58 119-176 10-70 (89)
77 1mh3_A Maltose binding-A1 home 99.4 1.3E-13 4.5E-18 127.5 2.6 57 114-170 365-421 (421)
78 2nzz_A Penetratin conjugated G 98.8 1E-09 3.6E-14 69.8 0.5 21 156-176 1-21 (37)
79 2ys9_A Homeobox and leucine zi 95.6 0.011 3.7E-07 42.3 3.7 39 126-164 18-56 (70)
80 2elh_A CG11849-PA, LD40883P; s 85.6 1.5 5E-05 31.6 5.3 45 114-163 16-60 (87)
81 3hug_A RNA polymerase sigma fa 84.7 1.8 6.1E-05 31.2 5.5 50 120-174 37-86 (92)
82 2glo_A Brinker CG9653-PA; prot 84.1 1.1 3.8E-05 29.7 3.8 46 118-164 3-48 (59)
83 1hlv_A CENP-B, major centromer 82.2 2.3 7.8E-05 32.3 5.5 49 117-168 4-52 (131)
84 2o8x_A Probable RNA polymerase 78.5 2.7 9.2E-05 28.0 4.2 47 120-171 15-61 (70)
85 1jko_C HIN recombinase, DNA-in 76.6 1.4 4.8E-05 27.3 2.2 42 121-167 6-47 (52)
86 1je8_A Nitrate/nitrite respons 75.4 2.6 8.9E-05 29.8 3.6 47 119-171 20-66 (82)
87 1tc3_C Protein (TC3 transposas 74.7 3.7 0.00013 24.8 3.8 40 120-164 5-44 (51)
88 3c57_A Two component transcrip 72.9 5 0.00017 29.1 4.7 46 120-171 27-72 (95)
89 1p4w_A RCSB; solution structur 72.8 5.6 0.00019 29.5 5.0 47 118-170 32-78 (99)
90 1s7o_A Hypothetical UPF0122 pr 71.2 7.9 0.00027 29.3 5.6 48 120-172 22-69 (113)
91 1ku3_A Sigma factor SIGA; heli 71.1 6.1 0.00021 26.9 4.6 50 120-170 10-59 (73)
92 3mzy_A RNA polymerase sigma-H 70.6 7.1 0.00024 29.7 5.4 49 120-174 109-157 (164)
93 2p7v_B Sigma-70, RNA polymeras 69.6 4.2 0.00014 27.4 3.4 51 120-171 5-55 (68)
94 1fse_A GERE; helix-turn-helix 69.5 6.6 0.00022 26.3 4.4 47 119-171 10-56 (74)
95 1x3u_A Transcriptional regulat 69.4 4 0.00014 27.9 3.3 46 120-171 16-61 (79)
96 1xsv_A Hypothetical UPF0122 pr 68.0 9.9 0.00034 28.6 5.6 48 120-172 25-72 (113)
97 2lv7_A Calcium-binding protein 67.4 8.7 0.0003 28.0 5.0 46 118-163 27-79 (100)
98 1tty_A Sigma-A, RNA polymerase 66.5 6.2 0.00021 28.0 3.9 51 120-171 18-68 (87)
99 2rnj_A Response regulator prot 64.2 4.9 0.00017 28.7 3.0 47 119-171 28-74 (91)
100 1or7_A Sigma-24, RNA polymeras 62.6 10 0.00036 29.9 5.0 47 121-172 141-187 (194)
101 1rp3_A RNA polymerase sigma fa 60.9 11 0.00037 30.7 5.0 47 121-172 188-234 (239)
102 3ulq_B Transcriptional regulat 59.8 13 0.00046 26.7 4.7 46 118-169 27-72 (90)
103 1iuf_A Centromere ABP1 protein 58.4 17 0.00057 28.4 5.4 51 115-165 6-60 (144)
104 2jn6_A Protein CGL2762, transp 57.6 12 0.00041 26.7 4.2 43 118-164 3-46 (97)
105 2pmy_A RAS and EF-hand domain- 56.2 7.6 0.00026 27.2 2.8 45 119-163 19-68 (91)
106 2qko_A Possible transcriptiona 56.0 6 0.0002 31.6 2.4 46 125-171 33-78 (215)
107 2rgt_A Fusion of LIM/homeobox 54.9 0.29 9.8E-06 39.8 -5.8 30 112-141 134-163 (169)
108 1fi6_A EH domain protein REPS1 54.8 11 0.00038 26.6 3.5 44 120-163 2-50 (92)
109 1c07_A Protein (epidermal grow 52.2 12 0.0004 26.7 3.3 43 121-163 4-51 (95)
110 2q24_A Putative TETR family tr 51.0 6.4 0.00022 30.8 1.8 42 125-168 20-61 (194)
111 2x48_A CAG38821; archeal virus 50.1 17 0.00059 22.9 3.5 39 120-163 13-53 (55)
112 3q0w_A HTH-type transcriptiona 49.9 5.5 0.00019 32.5 1.3 43 126-169 50-92 (236)
113 2q0o_A Probable transcriptiona 49.8 20 0.0007 29.8 4.9 47 118-170 173-219 (236)
114 2jpc_A SSRB; DNA binding prote 49.3 9.8 0.00034 24.5 2.3 41 125-171 3-43 (61)
115 3lph_A Protein REV; helix-loop 47.5 14 0.0005 26.1 2.9 36 127-176 19-54 (72)
116 3clo_A Transcriptional regulat 45.8 17 0.0006 30.8 3.9 48 119-172 196-243 (258)
117 2q1z_A RPOE, ECF SIGE; ECF sig 45.3 6.6 0.00023 30.9 1.0 46 121-171 136-181 (184)
118 2rn7_A IS629 ORFA; helix, all 44.8 26 0.00088 25.4 4.3 46 118-163 4-52 (108)
119 3i5g_B Myosin regulatory light 44.3 35 0.0012 26.3 5.2 40 117-156 6-50 (153)
120 3bni_A Putative TETR-family tr 44.0 9 0.00031 31.1 1.7 41 126-167 49-89 (229)
121 1j7q_A CAVP, calcium vector pr 43.0 35 0.0012 22.9 4.5 44 119-162 6-59 (86)
122 1u78_A TC3 transposase, transp 42.7 29 0.001 25.8 4.4 41 119-164 5-45 (141)
123 1l3l_A Transcriptional activat 42.4 28 0.00096 28.9 4.6 46 119-170 172-217 (234)
124 2rek_A Putative TETR-family tr 41.9 6.1 0.00021 31.0 0.3 42 125-168 21-62 (199)
125 3bd1_A CRO protein; transcript 41.7 11 0.00038 25.7 1.6 24 144-167 14-37 (79)
126 2xi8_A Putative transcription 41.3 10 0.00035 24.3 1.4 24 144-167 17-40 (66)
127 3t72_q RNA polymerase sigma fa 40.6 45 0.0015 24.5 5.0 53 120-173 19-71 (99)
128 1u78_A TC3 transposase, transp 40.3 44 0.0015 24.7 5.1 44 120-167 60-105 (141)
129 2hxi_A Putative transcriptiona 39.9 18 0.00062 30.2 3.0 50 118-168 26-76 (241)
130 2r1j_L Repressor protein C2; p 39.2 12 0.0004 24.2 1.4 24 144-167 21-44 (68)
131 3fmy_A HTH-type transcriptiona 39.0 32 0.0011 23.2 3.7 42 119-167 9-50 (73)
132 3qp6_A CVIR transcriptional re 38.1 56 0.0019 27.9 6.0 46 119-170 196-241 (265)
133 1zug_A Phage 434 CRO protein; 37.6 12 0.00043 24.3 1.3 24 144-167 19-42 (71)
134 3fiw_A Putative TETR-family tr 37.5 14 0.00047 30.1 1.8 50 120-170 24-74 (211)
135 2ktg_A Calmodulin, putative; e 37.0 33 0.0011 22.9 3.5 45 119-163 6-57 (85)
136 3c3w_A Two component transcrip 36.2 27 0.00093 28.3 3.5 46 119-170 148-193 (225)
137 3g7r_A Putative transcriptiona 36.1 18 0.00061 29.0 2.3 42 125-167 40-81 (221)
138 2k27_A Paired box protein PAX- 36.0 62 0.0021 24.9 5.5 45 119-163 82-133 (159)
139 3bs3_A Putative DNA-binding pr 35.9 14 0.00048 24.5 1.4 24 144-167 26-49 (76)
140 2hin_A GP39, repressor protein 35.9 21 0.0007 25.0 2.3 28 144-171 13-40 (71)
141 1pdn_C Protein (PRD paired); p 35.9 48 0.0016 23.8 4.6 40 120-164 17-56 (128)
142 2lfw_A PHYR sigma-like domain; 35.5 17 0.00059 28.2 2.0 46 121-171 94-139 (157)
143 3dcf_A Transcriptional regulat 35.4 18 0.00062 28.3 2.2 42 125-167 36-77 (218)
144 3bru_A Regulatory protein, TET 35.2 23 0.00079 27.9 2.8 42 125-167 35-76 (222)
145 1adr_A P22 C2 repressor; trans 34.8 15 0.00051 24.3 1.4 24 144-167 21-44 (76)
146 2opo_A Polcalcin CHE A 3; calc 34.5 31 0.0011 23.1 3.1 44 120-163 4-53 (86)
147 2k27_A Paired box protein PAX- 34.4 54 0.0019 25.3 4.9 41 119-164 24-64 (159)
148 1dtl_A Cardiac troponin C; hel 34.3 58 0.002 24.0 4.9 47 117-163 8-62 (161)
149 3g1o_A Transcriptional regulat 34.2 13 0.00046 30.5 1.3 42 126-168 49-90 (255)
150 3omt_A Uncharacterized protein 33.7 16 0.00055 24.3 1.4 23 144-166 24-46 (73)
151 3o9x_A Uncharacterized HTH-typ 33.7 35 0.0012 25.6 3.6 24 144-167 87-110 (133)
152 3kz9_A SMCR; transcriptional r 33.5 25 0.00087 27.0 2.7 42 125-167 22-63 (206)
153 2x7l_M HIV REV; nuclear export 33.3 51 0.0017 25.3 4.2 36 128-177 17-52 (115)
154 2hxo_A Putative TETR-family tr 33.0 37 0.0013 28.1 3.9 52 118-170 13-65 (237)
155 2b5a_A C.BCLI; helix-turn-heli 32.7 17 0.00057 24.2 1.3 23 144-166 26-48 (77)
156 1r69_A Repressor protein CI; g 32.7 17 0.00058 23.5 1.4 24 144-167 17-40 (69)
157 2hku_A A putative transcriptio 32.6 18 0.00063 28.6 1.8 42 126-169 26-67 (215)
158 3qrx_A Centrin; calcium-bindin 32.6 44 0.0015 25.0 4.0 50 113-162 14-70 (169)
159 1iq3_A Ralbp1-interacting prot 32.5 19 0.00066 26.6 1.8 45 119-163 14-63 (110)
160 1a04_A Nitrate/nitrite respons 31.9 47 0.0016 26.3 4.2 46 119-170 153-198 (215)
161 1avs_A Troponin C; muscle cont 31.9 51 0.0017 22.3 3.9 46 118-163 11-63 (90)
162 3kz3_A Repressor protein CI; f 31.5 19 0.00063 24.5 1.4 24 144-167 28-51 (80)
163 2qwt_A Transcriptional regulat 31.0 27 0.00092 27.3 2.6 41 126-168 19-59 (196)
164 3szt_A QCSR, quorum-sensing co 31.0 60 0.0021 27.0 4.9 44 120-169 175-218 (237)
165 2kpj_A SOS-response transcript 30.9 18 0.00062 25.5 1.3 24 144-167 25-48 (94)
166 1k78_A Paired box protein PAX5 30.9 1E+02 0.0035 23.2 5.9 49 118-166 88-143 (149)
167 2a6c_A Helix-turn-helix motif; 30.5 21 0.00073 24.6 1.6 23 144-166 34-56 (83)
168 2joj_A Centrin protein; N-term 30.3 37 0.0013 22.0 2.8 43 121-163 1-50 (77)
169 2v57_A TETR family transcripti 30.2 19 0.00065 27.7 1.5 40 126-168 20-59 (190)
170 3jsj_A Putative TETR-family tr 30.1 26 0.0009 26.9 2.3 44 125-170 14-57 (190)
171 1y7y_A C.AHDI; helix-turn-heli 30.1 20 0.00067 23.5 1.3 23 144-166 29-51 (74)
172 3ccy_A Putative TETR-family tr 29.9 34 0.0012 26.7 3.0 43 125-168 19-61 (203)
173 3f1b_A TETR-like transcription 29.8 20 0.00067 27.7 1.5 42 126-168 20-61 (203)
174 2i10_A Putative TETR transcrip 29.8 32 0.0011 27.0 2.8 45 125-170 16-60 (202)
175 3b7h_A Prophage LP1 protein 11 29.5 20 0.00068 23.8 1.3 23 144-166 23-45 (78)
176 2g7l_A TETR-family transcripti 29.5 30 0.001 28.9 2.7 53 118-171 16-69 (243)
177 1pdn_C Protein (PRD paired); p 29.4 59 0.002 23.3 4.1 45 120-164 75-126 (128)
178 1etf_B REV peptide; complex (R 29.2 32 0.0011 19.6 1.9 15 163-177 7-21 (26)
179 1k78_A Paired box protein PAX5 29.2 71 0.0024 24.2 4.7 40 120-164 32-71 (149)
180 2iai_A Putative transcriptiona 29.1 37 0.0013 27.2 3.1 44 125-169 35-78 (230)
181 3fwb_A Cell division control p 29.1 74 0.0025 23.4 4.7 46 117-162 13-65 (161)
182 3rd3_A Probable transcriptiona 29.0 20 0.0007 27.4 1.5 42 125-167 15-56 (197)
183 2wiu_B HTH-type transcriptiona 28.8 25 0.00087 23.9 1.8 24 144-167 28-51 (88)
184 2fq4_A Transcriptional regulat 28.7 22 0.00074 27.7 1.6 45 125-170 17-61 (192)
185 3ppb_A Putative TETR family tr 28.6 38 0.0013 25.7 3.0 43 125-168 14-56 (195)
186 2lhi_A Calmodulin, serine/thre 28.1 41 0.0014 26.4 3.2 38 118-155 2-44 (176)
187 3gzi_A Transcriptional regulat 27.9 30 0.001 27.1 2.3 42 126-168 23-64 (218)
188 2ofy_A Putative XRE-family tra 27.8 61 0.0021 21.9 3.7 23 144-166 30-52 (86)
189 2g7g_A RHA04620, putative tran 27.6 28 0.00094 28.2 2.1 43 126-171 17-59 (213)
190 1eh2_A EPS15; calcium binding, 27.6 84 0.0029 22.9 4.7 45 119-163 7-55 (106)
191 1l0o_C Sigma factor; bergerat 27.2 13 0.00045 30.1 0.0 43 121-168 199-241 (243)
192 2kgr_A Intersectin-1; structur 27.1 47 0.0016 24.3 3.2 45 119-163 6-55 (111)
193 2zcx_A SCO7815, TETR-family tr 26.9 25 0.00085 28.7 1.7 44 125-169 28-71 (231)
194 2oi8_A Putative regulatory pro 26.6 26 0.0009 28.2 1.8 43 125-168 21-63 (216)
195 2qib_A TETR-family transcripti 26.5 22 0.00074 28.8 1.2 43 126-169 19-61 (231)
196 2ict_A Antitoxin HIGA; helix-t 26.1 26 0.00088 24.5 1.4 23 144-166 24-46 (94)
197 2ef8_A C.ECOT38IS, putative tr 26.0 26 0.00088 23.6 1.4 24 144-167 26-49 (84)
198 3dew_A Transcriptional regulat 25.7 21 0.00072 27.4 1.0 45 125-170 13-57 (206)
199 2k9q_A Uncharacterized protein 25.7 24 0.00083 23.7 1.2 24 144-167 18-41 (77)
200 2qtq_A Transcriptional regulat 25.7 37 0.0013 26.2 2.5 44 125-169 21-64 (213)
201 1wdc_B Scallop myosin; calcium 25.6 95 0.0033 22.8 4.8 46 119-164 10-62 (156)
202 3he0_A Transcriptional regulat 25.5 36 0.0012 26.0 2.4 44 125-169 16-59 (196)
203 3f6w_A XRE-family like protein 25.3 27 0.00093 23.6 1.4 24 144-167 30-53 (83)
204 2ovk_B RLC, myosin regulatory 25.3 70 0.0024 23.5 4.0 46 118-163 7-59 (153)
205 2rae_A Transcriptional regulat 24.9 38 0.0013 26.3 2.4 42 125-167 22-63 (207)
206 3vib_A MTRR; helix-turn-helix 24.8 27 0.00092 27.4 1.5 42 126-168 16-57 (210)
207 3lwj_A Putative TETR-family tr 24.7 25 0.00085 27.2 1.2 43 125-168 17-59 (202)
208 3bdn_A Lambda repressor; repre 24.4 30 0.001 28.4 1.8 23 144-166 33-55 (236)
209 3him_A Probable transcriptiona 24.4 31 0.0011 26.6 1.8 44 124-168 20-63 (211)
210 2mys_B Myosin; muscle protein, 24.4 97 0.0033 23.0 4.7 45 120-164 18-70 (166)
211 1pb6_A Hypothetical transcript 24.3 26 0.0009 27.2 1.3 43 125-168 23-65 (212)
212 2np5_A Transcriptional regulat 24.2 21 0.00073 28.1 0.8 43 126-169 15-57 (203)
213 1j9i_A GPNU1 DBD;, terminase s 23.9 34 0.0012 22.9 1.7 21 144-164 5-25 (68)
214 2wui_A MEXZ, transcriptional r 23.7 40 0.0014 26.5 2.3 44 126-170 17-60 (210)
215 2mys_C Myosin; muscle protein, 23.7 1E+02 0.0034 22.1 4.5 43 121-163 2-51 (149)
216 3on2_A Probable transcriptiona 23.5 28 0.00097 26.5 1.3 43 125-168 17-59 (199)
217 3aqt_A Bacterial regulatory pr 23.3 19 0.00064 29.5 0.2 43 126-169 52-94 (245)
218 3f0c_A TETR-molecule A, transc 23.2 33 0.0011 26.8 1.7 43 125-168 16-58 (216)
219 1rzs_A Antirepressor, regulato 23.1 28 0.00096 22.9 1.1 19 144-162 13-31 (61)
220 2w53_A Repressor, SMet; antibi 23.0 38 0.0013 26.8 2.0 44 125-169 16-59 (219)
221 1lmb_3 Protein (lambda repress 23.0 32 0.0011 23.8 1.4 24 144-167 33-56 (92)
222 2guh_A Putative TETR-family tr 22.6 29 0.00098 27.9 1.2 43 126-169 45-87 (214)
223 2cqq_A RSGI RUH-037, DNAJ homo 22.4 1.4E+02 0.0047 20.6 4.7 42 119-160 9-50 (72)
224 3dpj_A Transcription regulator 22.2 40 0.0014 25.8 2.0 44 125-169 13-56 (194)
225 2pij_A Prophage PFL 6 CRO; tra 22.1 37 0.0013 22.0 1.6 22 144-165 16-37 (67)
226 2dg8_A Putative TETR-family tr 22.1 31 0.0011 26.7 1.3 44 125-169 14-57 (193)
227 3t76_A VANU, transcriptional r 22.0 33 0.0011 24.5 1.3 25 144-168 40-64 (88)
228 2kn2_A Calmodulin; S MAPK phos 21.9 81 0.0028 21.2 3.4 41 123-163 5-52 (92)
229 1x57_A Endothelial differentia 21.9 35 0.0012 23.7 1.4 24 144-167 29-52 (91)
230 3u0k_A Rcamp; fluorescent prot 21.8 79 0.0027 29.8 4.2 46 117-162 292-344 (440)
231 3v6g_A Probable transcriptiona 21.6 37 0.0013 27.1 1.7 41 126-167 20-60 (208)
232 3s8q_A R-M controller protein; 21.5 34 0.0012 23.1 1.3 23 144-166 27-49 (82)
233 2l49_A C protein; P2 bacteriop 21.1 35 0.0012 23.9 1.3 24 144-167 20-43 (99)
234 3knw_A Putative transcriptiona 21.0 35 0.0012 26.4 1.4 42 125-167 19-60 (212)
235 3qq6_A HTH-type transcriptiona 21.0 36 0.0012 23.2 1.3 21 144-164 26-46 (78)
236 1yio_A Response regulatory pro 20.3 1.1E+02 0.0038 23.7 4.4 44 121-170 143-186 (208)
237 1ui5_A A-factor receptor homol 20.2 60 0.002 25.7 2.7 43 125-168 14-56 (215)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.2e-21 Score=141.84 Aligned_cols=64 Identities=41% Similarity=0.691 Sum_probs=60.2
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHH
Q psy2704 110 GKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173 (256)
Q Consensus 110 ~~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~ 173 (256)
..++.||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3467788899999999999999999999999999999999999999999999999999999864
No 2
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.3e-20 Score=140.15 Aligned_cols=68 Identities=59% Similarity=1.026 Sum_probs=63.4
Q ss_pred CCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhhhcC
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLVSKQ 179 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~~~~ 179 (256)
.+.||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||.++.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 46778899999999999999999999999999999999999999999999999999999988776543
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=7.1e-21 Score=142.48 Aligned_cols=65 Identities=32% Similarity=0.482 Sum_probs=60.9
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 110 GKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 110 ~~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
...+.||.|+.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||.++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 45677888999999999999999999999999999999999999999999999999999998654
No 4
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.82 E-value=2.1e-20 Score=138.05 Aligned_cols=69 Identities=36% Similarity=0.461 Sum_probs=63.5
Q ss_pred cCCCCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhh
Q psy2704 108 QTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLV 176 (256)
Q Consensus 108 ~~~~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~ 176 (256)
..+.++.||.|+.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||..+..
T Consensus 7 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 7 WLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp SCCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 344567888999999999999999999999999999999999999999999999999999999987653
No 5
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.2e-20 Score=140.20 Aligned_cols=65 Identities=58% Similarity=0.929 Sum_probs=60.8
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHh
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~ 175 (256)
.++.||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||.++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 35678889999999999999999999999999999999999999999999999999999997653
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.82 E-value=2.6e-20 Score=137.53 Aligned_cols=66 Identities=38% Similarity=0.526 Sum_probs=61.5
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHh
Q psy2704 110 GKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175 (256)
Q Consensus 110 ~~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~ 175 (256)
..+++||.|+.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 345678889999999999999999999999999999999999999999999999999999997664
No 7
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=139.76 Aligned_cols=63 Identities=35% Similarity=0.493 Sum_probs=59.7
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~ 173 (256)
..+.||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||.+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 457788899999999999999999999999999999999999999999999999999999854
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.1e-20 Score=137.12 Aligned_cols=64 Identities=38% Similarity=0.564 Sum_probs=60.2
Q ss_pred CCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHh
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~ 175 (256)
.+.||.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999997653
No 9
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=4.7e-20 Score=141.07 Aligned_cols=69 Identities=41% Similarity=0.691 Sum_probs=62.6
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhhh
Q psy2704 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLVS 177 (256)
Q Consensus 109 ~~~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~~ 177 (256)
....++||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||......
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 344577888999999999999999999999999999999999999999999999999999999776443
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=134.47 Aligned_cols=63 Identities=52% Similarity=0.878 Sum_probs=59.3
Q ss_pred CCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.+.||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 457788999999999999999999999999999999999999999999999999999998653
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.7e-20 Score=136.02 Aligned_cols=63 Identities=32% Similarity=0.515 Sum_probs=59.3
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~ 173 (256)
..+.||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 356778899999999999999999999999999999999999999999999999999999854
No 12
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=136.87 Aligned_cols=67 Identities=72% Similarity=1.172 Sum_probs=62.0
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhhh
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLVS 177 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~~ 177 (256)
.++++|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||.++.+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q 72 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQ 72 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhh
Confidence 4567888999999999999999999999999999999999999999999999999999999776543
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.81 E-value=2.9e-20 Score=132.09 Aligned_cols=61 Identities=44% Similarity=0.748 Sum_probs=56.3
Q ss_pred CCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHH
Q psy2704 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173 (256)
Q Consensus 113 k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~ 173 (256)
+.||.|+.|+..|+.+||..|..++||+..++++||..|||++.+|++||||||+|+||.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4677899999999999999999999999999999999999999999999999999999864
No 14
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.81 E-value=3.1e-20 Score=133.99 Aligned_cols=63 Identities=43% Similarity=0.602 Sum_probs=59.5
Q ss_pred CCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhh
Q psy2704 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLV 176 (256)
Q Consensus 114 ~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~ 176 (256)
+||.|+.|+..|+.+||..|..++||+..++.+||..|||++.+|++||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 577899999999999999999999999999999999999999999999999999999977643
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.81 E-value=1.7e-20 Score=132.84 Aligned_cols=60 Identities=33% Similarity=0.551 Sum_probs=53.1
Q ss_pred CCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 113 k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
+++|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999985
No 16
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=2.6e-20 Score=138.84 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=57.9
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHK----THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~----~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
.+++||.||.|+.+|+.+||..|+. ++||+..+|++||..|||++.+|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4577888999999999999999999 999999999999999999999999999999999875
No 17
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.80 E-value=5e-20 Score=132.88 Aligned_cols=63 Identities=35% Similarity=0.570 Sum_probs=59.6
Q ss_pred CCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhh
Q psy2704 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLV 176 (256)
Q Consensus 114 ~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~ 176 (256)
.||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 577899999999999999999999999999999999999999999999999999999987654
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-20 Score=134.82 Aligned_cols=64 Identities=34% Similarity=0.491 Sum_probs=59.9
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
..+.||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+||..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 3567888999999999999999999999999999999999999999999999999999998643
No 19
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.80 E-value=6.2e-20 Score=136.62 Aligned_cols=65 Identities=71% Similarity=1.048 Sum_probs=60.2
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHh
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~ 175 (256)
.+++||.|+.|+..|+.+||..|..++||+..++++||..|||++.+|++||||||+|+||+.+.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhccc
Confidence 46778889999999999999999999999999999999999999999999999999999997753
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-20 Score=134.77 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=60.0
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.++.||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+||..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 3567888999999999999999999999999999999999999999999999999999998653
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.80 E-value=4e-20 Score=130.47 Aligned_cols=58 Identities=40% Similarity=0.704 Sum_probs=53.3
Q ss_pred CCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 114 ~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
.||.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5778999999999999999999999999999999999999999999999999999987
No 22
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=7.7e-20 Score=132.53 Aligned_cols=63 Identities=40% Similarity=0.603 Sum_probs=58.7
Q ss_pred CCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.+.+|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 356677899999999999999999999999999999999999999999999999999998653
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=7.9e-20 Score=127.52 Aligned_cols=57 Identities=44% Similarity=0.728 Sum_probs=55.3
Q ss_pred CCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 115 rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
||.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 577999999999999999999999999999999999999999999999999999987
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.79 E-value=5e-20 Score=132.93 Aligned_cols=61 Identities=43% Similarity=0.767 Sum_probs=58.3
Q ss_pred CCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 114 ~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
+||.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 5778999999999999999999999999999999999999999999999999999999764
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.79 E-value=3.4e-20 Score=133.66 Aligned_cols=63 Identities=57% Similarity=0.988 Sum_probs=59.8
Q ss_pred CCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHh
Q psy2704 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175 (256)
Q Consensus 113 k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~ 175 (256)
++||.|+.|+..|+.+||..|..++||+..++++||..|||++.+|++||||||+|+||.++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 567889999999999999999999999999999999999999999999999999999997654
No 26
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6e-20 Score=133.10 Aligned_cols=63 Identities=43% Similarity=0.700 Sum_probs=59.2
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~ 173 (256)
..+.||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+||..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 346778899999999999999999999999999999999999999999999999999998854
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.79 E-value=1.2e-19 Score=132.73 Aligned_cols=64 Identities=31% Similarity=0.528 Sum_probs=60.0
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
..+.||.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 3567888999999999999999999999999999999999999999999999999999998653
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.79 E-value=1.1e-19 Score=127.84 Aligned_cols=58 Identities=48% Similarity=0.739 Sum_probs=55.5
Q ss_pred CCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 115 rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
||.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5779999999999999999999999999999999999999999999999999999985
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.6e-20 Score=136.19 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=59.3
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKT----HYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~----~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~ 173 (256)
.++.||.|+.|+.+|+.+||.+|..+ +||+..++++||..|||++.+|+|||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 45778889999999999999999999 9999999999999999999999999999999999843
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.79 E-value=6.8e-20 Score=136.64 Aligned_cols=63 Identities=41% Similarity=0.676 Sum_probs=54.7
Q ss_pred CCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.++||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||..+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 456788999999999999999999999999999999999999999999999999999998643
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=5.9e-20 Score=131.59 Aligned_cols=62 Identities=32% Similarity=0.539 Sum_probs=58.5
Q ss_pred CCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 113 k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
+.||.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 46788999999999999999999999999999999999999999999999999999998653
No 32
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.79 E-value=7.3e-20 Score=136.56 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=56.6
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHK-----THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
..++||.||.|+.+|+.+|| .|.. ++||+..+|++||..|||++.+|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678889999999999999 7999 999999999999999999999999999999999875
No 33
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.79 E-value=7.2e-20 Score=138.41 Aligned_cols=62 Identities=40% Similarity=0.748 Sum_probs=55.5
Q ss_pred CCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHH
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~ 173 (256)
.+.||.|+.|+.+|+.+||..|..++||+..+|++||..|||++.+|+|||||||+|+||.+
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 45778899999999999999999999999999999999999999999999999999999864
No 34
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.6e-19 Score=133.33 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=57.3
Q ss_pred CccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhhhcC
Q psy2704 117 YRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLVSKQ 179 (256)
Q Consensus 117 ~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~~~~ 179 (256)
+|+.||.+|+.+||+.|..++||+..+|++||..+||++.+|+|||||||+|+|+.+..+..+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w~~~ 68 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRD 68 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSSTTC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHHHHH
Confidence 366799999999999999999999999999999999999999999999999999876554443
No 35
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.5e-19 Score=137.33 Aligned_cols=65 Identities=31% Similarity=0.494 Sum_probs=61.6
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CccchhhhhhhhhhHHHHHHHHh
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRID---------------LTEARVQVWFQNRRAKWRKQEKL 175 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lg---------------Ls~~qVqvWFQNRRaK~rk~~~~ 175 (256)
.+++||.|+.|+.+|+.+||.+|..++||+..+|++||..|| |++.+|++||||||+|+||+.+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 457788999999999999999999999999999999999999 99999999999999999998765
No 36
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=2.5e-19 Score=130.93 Aligned_cols=61 Identities=34% Similarity=0.465 Sum_probs=57.2
Q ss_pred CCCccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHh
Q psy2704 115 RRYRTTFSNFQLEELERAFHK-THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175 (256)
Q Consensus 115 rR~Rt~ft~~Ql~~Le~~F~~-~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~ 175 (256)
++.|+.|+.+|+.+||..|.. ++||+..++++||..+||++.+|++||||||+|+||.++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 466899999999999999995 9999999999999999999999999999999999997743
No 37
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.78 E-value=1.4e-19 Score=127.53 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=48.6
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
+++.+|.|+.|+.+|+.+||.+|..++||+..++++||..+||++.+|++||||||+|+|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 356788899999999999999999999999999999999999999999999999999975
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=2.3e-19 Score=130.67 Aligned_cols=60 Identities=35% Similarity=0.488 Sum_probs=56.7
Q ss_pred CCCccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 115 RRYRTTFSNFQLEELERAFHK-THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 115 rR~Rt~ft~~Ql~~Le~~F~~-~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.++|+.|+.+|+.+||..|.. ++||+..++++||..|||++.+|++||||||+|+||.++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 456899999999999999996 999999999999999999999999999999999999764
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.78 E-value=1.8e-19 Score=126.78 Aligned_cols=58 Identities=78% Similarity=1.254 Sum_probs=50.7
Q ss_pred CccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 117 YRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 117 ~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||.++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4899999999999999999999999999999999999999999999999999999764
No 40
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.77 E-value=2.8e-19 Score=124.30 Aligned_cols=57 Identities=42% Similarity=0.649 Sum_probs=54.6
Q ss_pred CCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 114 ~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
+||.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467799999999999999999999999999999999999999999999999999975
No 41
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=129.47 Aligned_cols=61 Identities=43% Similarity=0.745 Sum_probs=57.7
Q ss_pred CCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 114 ~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.||.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+..+
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 3678999999999999999999999999999999999999999999999999999998654
No 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.7e-19 Score=137.62 Aligned_cols=64 Identities=41% Similarity=0.639 Sum_probs=56.9
Q ss_pred CCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHh
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~ 175 (256)
.+.+|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||.++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 4677889999999999999999999999999999999999999999999999999999997653
No 43
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.77 E-value=2.6e-19 Score=134.80 Aligned_cols=64 Identities=31% Similarity=0.502 Sum_probs=58.7
Q ss_pred CCCccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhhhc
Q psy2704 115 RRYRTTFSNFQLEELERAF---HKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLVSK 178 (256)
Q Consensus 115 rR~Rt~ft~~Ql~~Le~~F---~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~~~ 178 (256)
||.|+.|+.+|+.+||.+| ..++||+..++++||..+||++.+|++||||||+|+|+.......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 68 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQE 68 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccccc
Confidence 6779999999999999999 899999999999999999999999999999999999997765443
No 44
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.77 E-value=5.1e-19 Score=122.88 Aligned_cols=54 Identities=48% Similarity=0.784 Sum_probs=51.0
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
|.|+.+|+.+||..|..++||+..+|++||..+||++.+|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 45
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=4.8e-19 Score=134.68 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=53.4
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHh
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~ 175 (256)
.|+.+|+.+||+.|..++||+..+|++||..|||++.||+|||||||+|||++++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999986654
No 46
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.76 E-value=4.5e-19 Score=136.23 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=57.7
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhh
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLV 176 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~ 176 (256)
....+|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+||.+...
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 345667899999999999999999999999999999999999999999999999999999975443
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=7e-19 Score=128.58 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=58.2
Q ss_pred CCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 113 k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
..++.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||.+.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 45677999999999999999999999999999999999999999999999999999998654
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.2e-19 Score=128.93 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=54.7
Q ss_pred CccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 117 YRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 117 ~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
+|+.||.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+.++
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 4567999999999999999999999999999999999999999999999999999664
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-19 Score=130.58 Aligned_cols=60 Identities=27% Similarity=0.426 Sum_probs=56.3
Q ss_pred CCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 115 rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.+.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||.++
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 345899999999999999999999999999999999999999999999999999998654
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2e-18 Score=125.92 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=58.1
Q ss_pred CCCCCCccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHH
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHK---THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~ 173 (256)
++.+|.|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 467788999999999999999976 99999999999999999999999999999999999864
No 51
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.9e-18 Score=131.90 Aligned_cols=68 Identities=28% Similarity=0.332 Sum_probs=62.7
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCccchhhhhhhhhhHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRI---------------------DLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l---------------------gLs~~qVqvWFQNRRaK~ 169 (256)
.+++||.|+.|+..|+.+||+.|..++||+..+|++||..| +|++.+|+|||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35788899999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHhhhc
Q psy2704 170 RKQEKLVSK 178 (256)
Q Consensus 170 rk~~~~~~~ 178 (256)
|++++....
T Consensus 83 kr~~~~~~~ 91 (102)
T 2da6_A 83 AFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHS
T ss_pred HHhhHhhhc
Confidence 998776543
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.74 E-value=1.6e-18 Score=126.38 Aligned_cols=62 Identities=32% Similarity=0.509 Sum_probs=57.9
Q ss_pred CCCCccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHh
Q psy2704 114 QRRYRTTFSNFQLEELERAF---HKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175 (256)
Q Consensus 114 ~rR~Rt~ft~~Ql~~Le~~F---~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~ 175 (256)
.||.|+.|+.+|+.+||.+| ..++||+..++++||..+||++.+|++||||||+|+|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 36779999999999999999 899999999999999999999999999999999999986553
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=127.40 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=57.9
Q ss_pred CCCCCCccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHK---THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.++||.|+.|+.+|+.+|+.+|.. ++||+..++++||..+||++.||++||||||+|+|+...
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 456778999999999999999987 699999999999999999999999999999999988644
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=9.9e-19 Score=124.35 Aligned_cols=59 Identities=27% Similarity=0.427 Sum_probs=56.0
Q ss_pred CCCCCccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 113 KQRRYRTTFSNFQLEELERAF---HKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 113 k~rR~Rt~ft~~Ql~~Le~~F---~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
..+|.|+.|+.+|+.+||.+| ..++||+..++++||..+||++.+|++||||||+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 356779999999999999999 89999999999999999999999999999999999986
No 55
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.4e-18 Score=128.62 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=53.4
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhh
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLV 176 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~ 176 (256)
.||.+|+.+||..|..++||+..+|++||..+||++++|+|||||||+|+|+.++..
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 389999999999999999999999999999999999999999999999999876543
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.72 E-value=4.9e-18 Score=119.24 Aligned_cols=55 Identities=27% Similarity=0.353 Sum_probs=53.0
Q ss_pred ccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 118 RTTFSNFQLEELERAFHK---THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+||.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 688999999999999999 9999999999999999999999999999999999874
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.9e-18 Score=126.34 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=53.0
Q ss_pred CCCccccCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 115 RRYRTTFSNFQLEELERAF-HKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 115 rR~Rt~ft~~Ql~~Le~~F-~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
.+.|..++.+|+.+||+.| ..++||+..+|++||..|||++++|+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3445567788999999999 999999999999999999999999999999999999974
No 58
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=6.5e-18 Score=121.49 Aligned_cols=60 Identities=28% Similarity=0.323 Sum_probs=56.1
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 110 GKRKQRRYRTTFSNFQLEELERAFHK-THYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 110 ~~~k~rR~Rt~ft~~Ql~~Le~~F~~-~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
+.++.||.||.|+.+|+.+|+..|+. ++||+...|+.||.++||++++|+|||||||.-.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 34578899999999999999999999 9999999999999999999999999999999754
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.72 E-value=3.1e-18 Score=143.02 Aligned_cols=62 Identities=24% Similarity=0.404 Sum_probs=54.9
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
..++||.|+.|+..|+.+||..|..++||+..+|++||..+||++++|+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35778889999999999999999999999999999999999999999999999999999985
No 60
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.71 E-value=3e-18 Score=143.84 Aligned_cols=64 Identities=30% Similarity=0.376 Sum_probs=52.5
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.+++||.|+.|+..|+.+||+.|..++||+..+|++||..+||++++|+|||||||+|+||..+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4577888999999999999999999999999999999999999999999999999999999654
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.71 E-value=4e-18 Score=140.47 Aligned_cols=62 Identities=31% Similarity=0.457 Sum_probs=55.7
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
.+++||.|+.|+..|+.+||..|..++||+..+|++||..+||++++|+|||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 35677889999999999999999999999999999999999999999999999999999985
No 62
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.71 E-value=3e-18 Score=132.70 Aligned_cols=65 Identities=32% Similarity=0.436 Sum_probs=54.1
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CccchhhhhhhhhhHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALR------------------ID---LTEARVQVWFQNRRAKW 169 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~------------------lg---Ls~~qVqvWFQNRRaK~ 169 (256)
.+++||.|+.|+.+|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+|+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4678889999999999999999999999999999999999 88 99999999999999998
Q ss_pred HHHHHh
Q psy2704 170 RKQEKL 175 (256)
Q Consensus 170 rk~~~~ 175 (256)
|++++.
T Consensus 86 k~k~~~ 91 (99)
T 1lfb_A 86 AFRHKL 91 (99)
T ss_dssp SCCC--
T ss_pred HHhchh
Confidence 876654
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.71 E-value=1e-17 Score=126.26 Aligned_cols=60 Identities=25% Similarity=0.317 Sum_probs=55.9
Q ss_pred CCCCCCccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHK---THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
.+++|.|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345666899999999999999999 999999999999999999999999999999999873
No 64
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=119.81 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHH
Q psy2704 122 SNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173 (256)
Q Consensus 122 t~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~ 173 (256)
+.+|+.+||+.|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 5789999999999999999999999999999999999999999999999854
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=138.08 Aligned_cols=60 Identities=32% Similarity=0.520 Sum_probs=57.7
Q ss_pred CCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
+++||.|+.|+.+|+.+||.+|..++||+..+|++||..+||++++|+|||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 467788999999999999999999999999999999999999999999999999999986
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.70 E-value=1.3e-17 Score=124.77 Aligned_cols=59 Identities=25% Similarity=0.288 Sum_probs=54.3
Q ss_pred CCccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 116 RYRTTFSNFQLEELERAFHK---THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 116 R~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
++|++|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 44666999999999999999 999999999999999999999999999999999998643
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=9.6e-18 Score=121.72 Aligned_cols=56 Identities=39% Similarity=0.608 Sum_probs=52.4
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
..++..|+.+||+.|..++||+..+|++||..|||++++|+|||||||+|+||.+.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 35789999999999999999999999999999999999999999999999998653
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.1e-17 Score=118.20 Aligned_cols=48 Identities=29% Similarity=0.387 Sum_probs=45.5
Q ss_pred HHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 124 FQLEELERAF-HKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 124 ~Ql~~Le~~F-~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
.|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 3899999999 57999999999999999999999999999999999986
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-17 Score=117.57 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=49.7
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
..++..|+.+||+.|..++||+..+|++||..|||++++|+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 44668899999999999999999999999999999999999999999998765
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.67 E-value=2.9e-17 Score=136.50 Aligned_cols=61 Identities=31% Similarity=0.457 Sum_probs=57.5
Q ss_pred CCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
+++||.|+.|+..|+.+||..|..++||+..+|++||..+||++++|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4667789999999999999999999999999999999999999999999999999999974
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.64 E-value=7e-17 Score=134.93 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 111 ~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
..+.||.|+.|+.+|+.+||..|..++||+..+|++||..|||++.+|+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3567888999999999999999999999999999999999999999999999999999988544
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.2e-15 Score=109.70 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=50.3
Q ss_pred cccCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 119 TTFSNFQLEELERAFH---KTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~---~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
..|+.+|+.+|+.+|. .++||+..++++||..+||++.||++||||||+|+||...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 3699999999999999 9999999999999999999999999999999999998543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.54 E-value=1.2e-15 Score=131.30 Aligned_cols=62 Identities=31% Similarity=0.390 Sum_probs=53.9
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CccchhhhhhhhhhHH
Q psy2704 110 GKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRID---------------------LTEARVQVWFQNRRAK 168 (256)
Q Consensus 110 ~~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lg---------------------Ls~~qVqvWFQNRRaK 168 (256)
..+++||.|+.|+..|+.+||+.|..++||+..+|++||..|+ |++.+|++||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4567889999999999999999999999999999999999999 9999999999999999
Q ss_pred HHH
Q psy2704 169 WRK 171 (256)
Q Consensus 169 ~rk 171 (256)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=101.80 Aligned_cols=46 Identities=15% Similarity=0.298 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 123 NFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 123 ~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
.+|+.+|+.+|..+++|+.+++..||..+||++++|||||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 3589999999999999999999999999999999999999999973
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.46 E-value=3.7e-14 Score=123.68 Aligned_cols=61 Identities=31% Similarity=0.432 Sum_probs=53.7
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CccchhhhhhhhhhH
Q psy2704 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRID---------------------LTEARVQVWFQNRRA 167 (256)
Q Consensus 109 ~~~~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lg---------------------Ls~~qVqvWFQNRRa 167 (256)
...+++||.|+.|+..|+.+||+.|..++||+..+|++||..|| |++.+|++||||||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 34577899999999999999999999999999999999999988 899999999999998
Q ss_pred HH
Q psy2704 168 KW 169 (256)
Q Consensus 168 K~ 169 (256)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=104.09 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=53.1
Q ss_pred cccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhh
Q psy2704 119 TTFSNFQLEELERAFHK---THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLV 176 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~ 176 (256)
..|+.++..+|+.+|.. ++||+..++++||..+||++.||++||+|||+|+++.....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46889999999999977 89999999999999999999999999999999998876543
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.36 E-value=1.3e-13 Score=127.53 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=53.7
Q ss_pred CCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 114 ~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
.++.|+.|+.+|+..||+.|..++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 456678899999999999999999999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.76 E-value=1e-09 Score=69.78 Aligned_cols=21 Identities=43% Similarity=0.931 Sum_probs=18.8
Q ss_pred chhhhhhhhhhHHHHHHHHhh
Q psy2704 156 ARVQVWFQNRRAKWRKQEKLV 176 (256)
Q Consensus 156 ~qVqvWFQNRRaK~rk~~~~~ 176 (256)
+||+|||||||+||||.+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999988764
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.58 E-value=0.011 Score=42.30 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=36.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhh
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQN 164 (256)
.+.|+++|...+.+...+...|+.+.+|+..+|+.||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 367999999999999999999999999999999999953
No 80
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.56 E-value=1.5 Score=31.57 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=32.3
Q ss_pred CCCCccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhh
Q psy2704 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQ 163 (256)
Q Consensus 114 ~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQ 163 (256)
+|+.+..|+.++....-+.+... . -..++|+.+|++...|..|.+
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 34456678888865555555432 2 256889999999999999974
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=84.68 E-value=1.8 Score=31.17 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=37.2
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.++..+..+|...|.... ...++|..+|++...|+.+...-|.|.|+.-.
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777653332 46789999999999999999877777766543
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=84.06 E-value=1.1 Score=29.73 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=31.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhh
Q psy2704 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQN 164 (256)
|..|+.+........+... ........++|..+|++...|..|.+.
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4468888776665555433 221223678999999999999999753
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=82.21 E-value=2.3 Score=32.27 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=37.8
Q ss_pred CccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 117 YRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 117 ~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
+|..|+.++...+-..+..+.... ..++|+.+|++...|..|.++++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 467899999877777775555443 3368999999999999999876654
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=78.52 E-value=2.7 Score=28.01 Aligned_cols=47 Identities=11% Similarity=-0.055 Sum_probs=35.5
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
.++..+..+|...|... ....++|..+|++...|+.|...-|.+.|+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 36778888888776433 235789999999999999988766666554
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=76.63 E-value=1.4 Score=27.34 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=28.3
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 121 FSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 121 ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
++.++...+...+... . ...+||..+|++...|..|++....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHccc
Confidence 4455555555555433 2 3568999999999999999975443
No 86
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=75.36 E-value=2.6 Score=29.83 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=35.8
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
..++..+..+|...+. . ....++|..+|+++..|+.+.++-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4588889888888432 2 246789999999999999988876666554
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=74.73 E-value=3.7 Score=24.78 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=28.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhh
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQN 164 (256)
.++.++...+...+... + ...++|+.+|++...|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 35666665555555433 2 3668999999999999999854
No 88
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=72.93 E-value=5 Score=29.11 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
.++..+..+|...+... ...++|..+|+++..|+.+.++-|.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 47888988888864322 24789999999999999988766665544
No 89
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=72.78 E-value=5.6 Score=29.49 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=36.0
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
...++..+..+|...++.. ...++|..||+++..|+.+.++-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4558999999998765322 2478999999999999998876655543
No 90
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=71.24 E-value=7.9 Score=29.31 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=37.9
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
.++..+..++...|.... ...++|..+|++...|+.|.+.-|.+.|+.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 477888888887764432 357899999999999999998888777664
No 91
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=71.14 E-value=6.1 Score=26.91 Aligned_cols=50 Identities=14% Similarity=0.012 Sum_probs=35.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
.++..+..+|...|..... ....-.++|..+|++...|+.|...-+.|.|
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3678888999888851100 0123568999999999999998876666665
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=70.58 E-value=7.1 Score=29.71 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=35.4
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~ 174 (256)
.++..+..+|. .|... ....++|..+|++...|+.+.+.-|.|.|+.-.
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777 43322 246789999999999999999877777665443
No 93
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=69.60 E-value=4.2 Score=27.38 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=35.7
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
.++..+..+|...|....+ ....-.++|..+|++...|+.+...-+.|.|+
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3677888888888732111 11235789999999999999988766666554
No 94
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=69.48 E-value=6.6 Score=26.29 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=35.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
..++..+..+|...+ ..+ ...++|..+|++...|+.++++-+.|.+.
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 457888998888843 222 35689999999999999988876655543
No 95
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=69.44 E-value=4 Score=27.95 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=34.0
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
.++..+..+|..+| ..+ ...++|..+|++...|+.++.+-+.|.+.
T Consensus 16 ~L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 36777888887743 222 35689999999999999988876666654
No 96
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=68.01 E-value=9.9 Score=28.63 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
.++..+..++...|.... ...++|..+|++...|+.+...-|.+.|+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 367777777777654332 357899999999999999998878777764
No 97
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=67.42 E-value=8.7 Score=28.01 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=37.2
Q ss_pred ccccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhC--Cccchhhhhhh
Q psy2704 118 RTTFSNFQLEELERAFH-----KTHYPDVFFREELALRID--LTEARVQVWFQ 163 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lg--Ls~~qVqvWFQ 163 (256)
...++.+++..|++.|. .+.+.+..+...+.+.+| +++.+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45688999999999995 466999999999888887 56677887774
No 98
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=66.49 E-value=6.2 Score=28.01 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=35.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
.++..+..+|...|..... ......++|..+|++...|+.+...-+.|.|+
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3677888888888742100 01235789999999999999988766666554
No 99
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=64.16 E-value=4.9 Score=28.73 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=35.1
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
..++..+..+|...+. .+ ...++|..+|+++..|+.+..+-|.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4578888888887543 22 24578999999999999998876666554
No 100
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=62.56 E-value=10 Score=29.88 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=34.5
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 121 FSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 121 ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
++..+..+|.-.|... ....++|..+|++...|+.+...-|.|.|+.
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5666666776655332 2357899999999999999998777776654
No 101
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=60.87 E-value=11 Score=30.65 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=35.8
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 121 FSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 121 ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
++..+..+|...|... ....++|..+|++...|+.+...-|.|.|+.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5677777777776432 2467899999999999999998777776654
No 102
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=59.80 E-value=13 Score=26.71 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=34.0
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
...++..+..+|.-.++ .+ ...++|..||++++.|+...++=+.|.
T Consensus 27 ~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45689999999988762 22 367899999999999998776654443
No 103
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=58.41 E-value=17 Score=28.40 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCCccccCHHHHHHHHHHH-hhCCCCCHHHHHHHH-HHh--CCccchhhhhhhhh
Q psy2704 115 RRYRTTFSNFQLEELERAF-HKTHYPDVFFREELA-LRI--DLTEARVQVWFQNR 165 (256)
Q Consensus 115 rR~Rt~ft~~Ql~~Le~~F-~~~~yPs~~~r~~LA-~~l--gLs~~qVqvWFQNR 165 (256)
++.|..+|-+|...+-..+ +.++..+..+....| ..+ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4568889999999999988 667666655444432 267 78889999999763
No 104
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=57.64 E-value=12 Score=26.74 Aligned_cols=43 Identities=9% Similarity=0.207 Sum_probs=30.1
Q ss_pred ccccCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhCCccchhhhhhhh
Q psy2704 118 RTTFSNFQLEELERAFHKT-HYPDVFFREELALRIDLTEARVQVWFQN 164 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~~~-~yPs~~~r~~LA~~lgLs~~qVqvWFQN 164 (256)
|..|+.++....-..+... .+ ...++|..+|++...|..|.+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3468887765555555322 22 3678999999999999999854
No 105
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=56.22 E-value=7.6 Score=27.18 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=37.3
Q ss_pred cccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCccchhhhhhh
Q psy2704 119 TTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDLTEARVQVWFQ 163 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgLs~~qVqvWFQ 163 (256)
..++.+++..|+..|. .+.+.+..+...+...+|++..+|+.+|+
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4578889999999984 35688999999988999998888888875
No 106
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=56.00 E-value=6 Score=31.58 Aligned_cols=46 Identities=4% Similarity=0.142 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
-+....+.|....|-. -...+||+..|++...|-.+|.|+..=..-
T Consensus 33 Il~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~ 78 (215)
T 2qko_A 33 LVNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDLFDQ 78 (215)
T ss_dssp HHHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHHHHH
Confidence 3555666788877643 457789999999999999999997665443
No 107
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=54.86 E-value=0.29 Score=39.80 Aligned_cols=30 Identities=7% Similarity=-0.103 Sum_probs=21.5
Q ss_pred CCCCCCccccCHHHHHHHHHHHhhCCCCCH
Q psy2704 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDV 141 (256)
Q Consensus 112 ~k~rR~Rt~ft~~Ql~~Le~~F~~~~yPs~ 141 (256)
.+.||.|+.|+..|+++|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 466788999999999999999999999864
No 108
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=54.83 E-value=11 Score=26.64 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCccchhhhhhh
Q psy2704 120 TFSNFQLEELERAFH-----KTHYPDVFFREELALRIDLTEARVQVWFQ 163 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgLs~~qVqvWFQ 163 (256)
.++.++...+++.|. .+.+.+..+...+...+|+++..++.+|+
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467888999999995 35578888888888888999888877664
No 109
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=52.20 E-value=12 Score=26.69 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=34.9
Q ss_pred cCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCccchhhhhhh
Q psy2704 121 FSNFQLEELERAFH-----KTHYPDVFFREELALRIDLTEARVQVWFQ 163 (256)
Q Consensus 121 ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgLs~~qVqvWFQ 163 (256)
++.++...|++.|. .+.+.+..+...+...+|+++..++.+|+
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56778888999884 35688999988888889999888887775
No 110
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=51.03 E-value=6.4 Score=30.83 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
-+..-.+.|....| . .....||+..|++...|-.+|.|+-.=
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 45566667888888 5 688999999999999999999987543
No 111
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=50.06 E-value=17 Score=22.93 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=27.3
Q ss_pred ccC--HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhh
Q psy2704 120 TFS--NFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQ 163 (256)
Q Consensus 120 ~ft--~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQ 163 (256)
.++ .++...+...+... + ...++|..+|++...|..|++
T Consensus 13 ~l~~~~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 455 55555555555433 2 356899999999999999985
No 112
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=49.86 E-value=5.5 Score=32.54 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=32.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
+..-.+.|....|- .-...+||++.|++...|-..|.||..=.
T Consensus 50 l~aA~~lf~e~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~L~ 92 (236)
T 3q0w_A 50 LATAENLLEDRPLA-DISVDDLAKGAGISRPTFYFYFPSKEAVL 92 (236)
T ss_dssp HHHHHHHHHHSCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCcc-cCCHHHHHHHhCCcHHHHHHHCCCHHHHH
Confidence 45555567777653 33467899999999999999999876543
No 113
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=49.82 E-value=20 Score=29.79 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=35.5
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
...++..++++|.-.++.. .-+++|..||+++..|+...+|-+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3458888888887654222 3578999999999999998887666654
No 114
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=49.26 E-value=9.8 Score=24.54 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
|..+|...+. . + ...++|..+|+++..|+.+.++-+.|.+.
T Consensus 3 e~~vl~l~~~-g-~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 3 ERQVLKLIDE-G-Y----TNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHHHHT-S-C----CSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-C-C----CHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 4556655332 2 2 24689999999999999998876666554
No 115
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=47.53 E-value=14 Score=26.11 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhh
Q psy2704 127 EELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLV 176 (256)
Q Consensus 127 ~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~ 176 (256)
.++.-.|+.|+||..+-... ==+|||.+||..+++.
T Consensus 19 RiIkiLyQSNP~P~p~GTrq--------------aRRNRRRRWR~RQrQI 54 (72)
T 3lph_A 19 RLIKFLYQSNPPPNPEGTRQ--------------ARRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHTCCCCCCCSCHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchH--------------HHHHHHHHHHHHHHHH
Confidence 34455688999997642111 1269999999887764
No 116
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=45.79 E-value=17 Score=30.77 Aligned_cols=48 Identities=19% Similarity=0.050 Sum_probs=37.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~ 172 (256)
..++..+..+|.-.++ .+ .-+++|..||+++..|++..++-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~~--G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIRK--GL----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4588889888888642 22 367899999999999999888777766654
No 117
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=45.31 E-value=6.6 Score=30.88 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=31.8
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 121 FSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 121 ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
++..+..+|.-.|.... ...++|..+|+++..|+.+...-|.+.|+
T Consensus 136 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDL-----THRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCC-----SSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45566666665443221 23467899999999999999877777665
No 118
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=44.83 E-value=26 Score=25.39 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=30.1
Q ss_pred ccccCHHHHHHHHHHH-hhC-CCCCH-HHHHHHHHHhCCccchhhhhhh
Q psy2704 118 RTTFSNFQLEELERAF-HKT-HYPDV-FFREELALRIDLTEARVQVWFQ 163 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F-~~~-~yPs~-~~r~~LA~~lgLs~~qVqvWFQ 163 (256)
+..|+.++....-..+ ... .+.+. ....++|..+|++...|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3458887765444443 321 12222 3567899999999999999975
No 119
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=44.34 E-value=35 Score=26.26 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=32.6
Q ss_pred CccccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCccc
Q psy2704 117 YRTTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDLTEA 156 (256)
Q Consensus 117 ~Rt~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgLs~~ 156 (256)
+|..+|.+|+..|+..|. .+.+.+..+...+.+.||+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 356799999999999995 4668999999888888886554
No 120
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=44.01 E-value=9 Score=31.11 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
+....+.|....|-. -...+||++.|++...|-.+|.|+-.
T Consensus 49 l~aA~~l~~~~G~~~-~tv~~IA~~AGvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 49 LDACADLLDEVGYDA-LSTRAVALRADVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcChhh-ccHHHHHHHHCCCchhHHHHcCCHHH
Confidence 445555677776543 34678999999999999999998754
No 121
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=43.02 E-value=35 Score=22.90 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=32.2
Q ss_pred cccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--ccch---hhhhh
Q psy2704 119 TTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDL--TEAR---VQVWF 162 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgL--s~~q---VqvWF 162 (256)
..++.+++..|+..|. .+.+.+..+...+...+|. +..+ |+.+|
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4467788889999984 4568999999888888874 4445 55555
No 122
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=42.71 E-value=29 Score=25.79 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=30.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhh
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQN 164 (256)
..++.++...+...+... + -..++|..+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 356777776666666433 2 3567899999999999999974
No 123
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=42.38 E-value=28 Score=28.88 Aligned_cols=46 Identities=13% Similarity=-0.018 Sum_probs=34.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
..++..++++|.-.++ . ..-.++|..||+++..|+...+|-|.|..
T Consensus 172 ~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRWIAV--G----KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHHHTT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4588889888876432 2 13578999999999999998877666543
No 124
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=41.88 E-value=6.1 Score=31.02 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
-+..-.+.|....| . ....+||+..|++...|-..|.|+-.=
T Consensus 21 Il~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L 62 (199)
T 2rek_A 21 IIEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGL 62 (199)
T ss_dssp HHHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHH
Confidence 35556667888888 5 588999999999999999999987543
No 125
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=41.72 E-value=11 Score=25.74 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=21.4
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||+.+|++...|..|..+++.
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCC
Confidence 578999999999999999988764
No 126
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=41.29 E-value=10 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.8
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 127
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=40.60 E-value=45 Score=24.51 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=36.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~ 173 (256)
.++..+..++...|..+.+ ....-.++|..+|++...|+.....-+.|.|+..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3566777788777743211 1124678999999999999998877666666543
No 128
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=40.32 E-value=44 Score=24.75 Aligned_cols=44 Identities=7% Similarity=0.071 Sum_probs=30.0
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC--CccchhhhhhhhhhH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRID--LTEARVQVWFQNRRA 167 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lg--Ls~~qVqvWFQNRRa 167 (256)
.++.++...+.+. ..++..+. .+|+..+| ++...|..|++....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4677777666665 44444444 46777888 788999999976555
No 129
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=39.85 E-value=18 Score=30.16 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=34.1
Q ss_pred ccccCHHH-HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 118 RTTFSNFQ-LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 118 Rt~ft~~Q-l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
|...+.++ +..-.+.|....|-. -...+||+.+|++...|-.+|.||..=
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~L 76 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTEL 76 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHHH
Confidence 33444444 445555676666543 446789999999999999999997653
No 130
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=39.15 E-value=12 Score=24.17 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999988654
No 131
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=39.00 E-value=32 Score=23.15 Aligned_cols=42 Identities=7% Similarity=-0.011 Sum_probs=32.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..++.+.+..+......+ ..+||..+|++...|..|-++++.
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457888887777654322 568999999999999999988653
No 132
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=38.12 E-value=56 Score=27.89 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=34.6
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
..++..++++|.-..+-. ...++|..||++++.|+...+|=+.|..
T Consensus 196 ~~Lt~re~~vl~~~~~G~------s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGK------TNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 457788888777664211 3578999999999999998887776654
No 133
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=37.55 E-value=12 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.1
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988765
No 134
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=37.48 E-value=14 Score=30.15 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=34.9
Q ss_pred ccCHHH-HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 120 TFSNFQ-LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 120 ~ft~~Q-l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
..+.++ +..-.+.|....|- .-....||+.+|++...|-.+|.||..=..
T Consensus 24 ~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 24 KMNRETVITEALDLLDEVGLD-GVSTRRLAKRLGVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHTTCSSHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 334433 45556667766653 334778999999999999999998766443
No 135
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=37.00 E-value=33 Score=22.86 Aligned_cols=45 Identities=9% Similarity=0.077 Sum_probs=33.5
Q ss_pred cccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhC--Cccchhhhhhh
Q psy2704 119 TTFSNFQLEELERAFH-----KTHYPDVFFREELALRID--LTEARVQVWFQ 163 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lg--Ls~~qVqvWFQ 163 (256)
..++.+++..|+..|. .+.+.+..+...+...+| ++...|..+|+
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4578899999999995 345788888888888777 45556666664
No 136
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=36.17 E-value=27 Score=28.27 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=35.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
..+|..+.++|+-..+. ...++||..++++++.|++..+|=|.|..
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 35788888888766543 24678999999999999999887776653
No 137
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=36.14 E-value=18 Score=28.98 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
-+..-.+.|....|-. -...+||+..|++...|-.+|.|+-.
T Consensus 40 Il~aA~~lf~~~G~~~-~t~~~IA~~AGvs~~tlY~~F~sKe~ 81 (221)
T 3g7r_A 40 LLGTATRIFYAEGIHS-VGIDRITAEAQVTRATLYRHFSGKDD 81 (221)
T ss_dssp HHHHHHHHHHHHCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 3455555677777653 34678999999999999999998755
No 138
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=36.00 E-value=62 Score=24.91 Aligned_cols=45 Identities=4% Similarity=-0.095 Sum_probs=28.7
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHH-------hCCccchhhhhhh
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALR-------IDLTEARVQVWFQ 163 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~-------lgLs~~qVqvWFQ 163 (256)
..++.++...+.+.+..++..+..+..+.... ..++...|..|++
T Consensus 82 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 82 KVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 45677777788888777766666554432221 2467778888875
No 139
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=35.91 E-value=14 Score=24.52 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999988664
No 140
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=35.89 E-value=21 Score=24.96 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=22.9
Q ss_pred HHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
..+||+.||++...|..|+.++..-.++
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~~ 40 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPLR 40 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHHH
Confidence 6789999999999999999775554444
No 141
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=35.86 E-value=48 Score=23.81 Aligned_cols=40 Identities=5% Similarity=-0.037 Sum_probs=29.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhh
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQN 164 (256)
.++.++...+...+.. .+ -..++|..+|++...|..|++.
T Consensus 17 ~~s~~~r~~i~~~~~~-g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 4677776666666643 32 2467899999999999999964
No 142
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=35.49 E-value=17 Score=28.21 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=32.2
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 121 FSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 121 ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
++..+..+|.-.| .......++|..+|+++..|+.+...-|.+.|+
T Consensus 94 Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 94 MTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp SCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5566666665443 223346789999999999999988766655554
No 143
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=35.43 E-value=18 Score=28.27 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
-+....+.|....|-. -...+||+..|++...+-.+|.++-.
T Consensus 36 Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 36 IIKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3556666788877643 34778999999999999999998765
No 144
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=35.19 E-value=23 Score=27.85 Aligned_cols=42 Identities=10% Similarity=0.155 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
-+....+.|....|-. -....||+..|++...|-.+|.|+-.
T Consensus 35 Il~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~~ 76 (222)
T 3bru_A 35 LIRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNKAD 76 (222)
T ss_dssp HHHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCHHH
Confidence 3555566687777643 34778999999999999999999765
No 145
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=34.82 E-value=15 Score=24.28 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=21.1
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999988664
No 146
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=34.48 E-value=31 Score=23.10 Aligned_cols=44 Identities=11% Similarity=0.028 Sum_probs=30.8
Q ss_pred ccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhC-Cccchhhhhhh
Q psy2704 120 TFSNFQLEELERAFH-----KTHYPDVFFREELALRID-LTEARVQVWFQ 163 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lg-Ls~~qVqvWFQ 163 (256)
.++.++...|+..|. .+.+.+..+...+...+| ++...|+.+|+
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 467888888999884 355788888888777776 55566666664
No 147
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.35 E-value=54 Score=25.28 Aligned_cols=41 Identities=5% Similarity=0.074 Sum_probs=30.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhh
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQN 164 (256)
..++.++...+...+... + -..++|+.+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 357777776666666533 2 3567899999999999999964
No 148
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=34.31 E-value=58 Score=24.04 Aligned_cols=47 Identities=13% Similarity=0.021 Sum_probs=34.5
Q ss_pred CccccCHHHHHHHHHHHh-----h-CCCCCHHHHHHHHHHhC--Cccchhhhhhh
Q psy2704 117 YRTTFSNFQLEELERAFH-----K-THYPDVFFREELALRID--LTEARVQVWFQ 163 (256)
Q Consensus 117 ~Rt~ft~~Ql~~Le~~F~-----~-~~yPs~~~r~~LA~~lg--Ls~~qVqvWFQ 163 (256)
.-..++.+++..|+..|. . +.+.+..+...+...+| ++...|+.+|+
T Consensus 8 ~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345688999999999984 2 55788888888887777 45556666654
No 149
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=34.21 E-value=13 Score=30.50 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=31.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
+..-.+.|....|- .-...+||+..|++...|-.+|.||..=
T Consensus 49 l~AA~~lf~~~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~L 90 (255)
T 3g1o_A 49 LATAENLLEDRPLA-DISVDDLAKGAGISRPTFYFYFPSKEAV 90 (255)
T ss_dssp HHHHHHHHTTSCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCc-cCcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 45555667777653 3346789999999999999999987654
No 150
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=33.70 E-value=16 Score=24.26 Aligned_cols=23 Identities=22% Similarity=0.279 Sum_probs=20.4
Q ss_pred HHHHHHHhCCccchhhhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQNRR 166 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRR 166 (256)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998864
No 151
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=33.66 E-value=35 Score=25.58 Aligned_cols=24 Identities=4% Similarity=-0.085 Sum_probs=20.1
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|-++++.
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 357899999999999999988653
No 152
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=33.46 E-value=25 Score=27.01 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
-+..-.+.|....|-. -....||+..|++...|-.+|.|+-.
T Consensus 22 Il~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 22 LMEIALEVFARRGIGR-GGHADIAEIAQVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHHHHSCCSS-CCHHHHHHHHTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHhcCccc-ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3455556687777653 34678999999999999999999754
No 153
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=33.35 E-value=51 Score=25.33 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=23.9
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHHHHHhhh
Q psy2704 128 ELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLVS 177 (256)
Q Consensus 128 ~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk~~~~~~ 177 (256)
+++-.|+.|+||...- - +.==+|||.+||+++++..
T Consensus 17 iIkiLyQSNPyP~peG-----------T---RqaRRNRRRRWR~RQrQI~ 52 (115)
T 2x7l_M 17 LIKFLYQSNPPPNPEG-----------T---RQARRNRRRRWRERQRQIH 52 (115)
T ss_dssp HHHHHHHSSCCCCCCC-----------C---TTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCCCC-----------c---hhhhHhHHHHHHHHHHHHH
Confidence 3444578899997641 1 1112699999999887654
No 154
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=33.00 E-value=37 Score=28.08 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=35.2
Q ss_pred ccccCHHH-HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 118 RTTFSNFQ-LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 118 Rt~ft~~Q-l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
|...+.++ +..-.+.|....|-. -...+||+.+|++...|-..|.||-.=..
T Consensus 13 ~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 65 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAELLG 65 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHHHHH
Confidence 33444443 455556677777543 34678999999999999999999765443
No 155
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=32.67 E-value=17 Score=24.19 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=20.4
Q ss_pred HHHHHHHhCCccchhhhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQNRR 166 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRR 166 (256)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999998765
No 156
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=32.66 E-value=17 Score=23.48 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.0
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999988664
No 157
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.62 E-value=18 Score=28.56 Aligned_cols=42 Identities=5% Similarity=0.119 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
+..-.+.|.... ..-....||+..|++...|-.+|.|+..=.
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~ 67 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERLF 67 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 445555676666 566788999999999999999999876543
No 158
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=32.57 E-value=44 Score=25.02 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=32.1
Q ss_pred CCCCCccccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--ccchhhhhh
Q psy2704 113 KQRRYRTTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDL--TEARVQVWF 162 (256)
Q Consensus 113 k~rR~Rt~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgL--s~~qVqvWF 162 (256)
...+.+..++.+++..|++.|. .+.+.+..+...+...+|+ +...|+..|
T Consensus 14 ~~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 14 DQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp ------CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3445577899999999999995 3457888888887777765 334444333
No 159
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=32.49 E-value=19 Score=26.64 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=34.3
Q ss_pred cccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCccchhhhhhh
Q psy2704 119 TTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDLTEARVQVWFQ 163 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgLs~~qVqvWFQ 163 (256)
..++.++...+++.|. .+.+.+..+...+...+|+++..|+.+|+
T Consensus 14 ~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 14 WRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp CCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4466777888888884 34578888888887788998888887764
No 160
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=31.90 E-value=47 Score=26.28 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=36.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
..+|..+.++|+-..+.. .+++||..++++++.|++..+|=|.|..
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 458888888887765432 3678999999999999998888777754
No 161
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=31.89 E-value=51 Score=22.28 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=34.6
Q ss_pred ccccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--ccchhhhhhh
Q psy2704 118 RTTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDL--TEARVQVWFQ 163 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgL--s~~qVqvWFQ 163 (256)
...++..++..|...|. .+.+.+..+...+...+|+ +...|+.+|+
T Consensus 11 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 11 RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HHHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34588999999999994 3558888888888888874 4556776664
No 162
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=31.49 E-value=19 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.2
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 467999999999999999988765
No 163
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=31.03 E-value=27 Score=27.29 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
+..-.+.|....| . -....||+..|++...|-.+|.|+..=
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L 59 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQAL 59 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 4455566888888 5 678999999999999999999987543
No 164
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=30.98 E-value=60 Score=27.02 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=28.5
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
.+|..++++|.-...- ....++|..||++++.|+.-.+|=+.|.
T Consensus 175 ~Lt~re~~vl~~~~~G------~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 175 RLTARETEMLKWTAVG------KTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp CCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 4555555555443211 1247889999999999998777655553
No 165
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=30.94 E-value=18 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.0
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||+.+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 567999999999999999988654
No 166
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=30.87 E-value=1e+02 Score=23.22 Aligned_cols=49 Identities=6% Similarity=-0.022 Sum_probs=31.3
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHH-HHHHh----C--Cccchhhhhhhhhh
Q psy2704 118 RTTFSNFQLEELERAFHKTHYPDVFFREE-LALRI----D--LTEARVQVWFQNRR 166 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~-LA~~l----g--Ls~~qVqvWFQNRR 166 (256)
+..++.++...+.+.+..++..+..++.. |.... | ++...|..|++.+.
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKV 143 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHh
Confidence 34578888888888887776666554433 22211 5 77888988886443
No 167
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=30.53 E-value=21 Score=24.58 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.9
Q ss_pred HHHHHHHhCCccchhhhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQNRR 166 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRR 166 (256)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999999876
No 168
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=30.27 E-value=37 Score=22.00 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=29.5
Q ss_pred cCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--ccchhhhhhh
Q psy2704 121 FSNFQLEELERAFH-----KTHYPDVFFREELALRIDL--TEARVQVWFQ 163 (256)
Q Consensus 121 ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgL--s~~qVqvWFQ 163 (256)
++.+++..|+..|. .+.+.+..+...+...+|. +...|+.+|+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35677888888884 3557888888887777764 4455666653
No 169
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=30.20 E-value=19 Score=27.66 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=30.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
+..-.+.|... .......||+..|++...|-.+|.|+..=
T Consensus 20 l~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 59 (190)
T 2v57_A 20 LDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDL 59 (190)
T ss_dssp HHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 44445556555 55678899999999999999999997653
No 170
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=30.10 E-value=26 Score=26.85 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
-+..-.+.|....|- -....||+..|++...|-..|.||..=..
T Consensus 14 Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~~ 57 (190)
T 3jsj_A 14 LLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELLA 57 (190)
T ss_dssp HHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 455666678888776 66889999999999999999999765433
No 171
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.10 E-value=20 Score=23.54 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHHhCCccchhhhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQNRR 166 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRR 166 (256)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999998864
No 172
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=29.88 E-value=34 Score=26.67 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
-+....+.|....|-. -...+||+..|++...+-.+|.|+-.=
T Consensus 19 Il~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~yF~sKe~L 61 (203)
T 3ccy_A 19 IIERAAAMFARQGYSE-TSIGDIARACECSKSRLYHYFDSKEAV 61 (203)
T ss_dssp HHHHHHHHHHHTCTTT-SCHHHHHHHTTCCGGGGTTTCSCHHHH
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHhCCCcCeeeeeeCCHHHH
Confidence 3555666788887654 347789999999999999999987543
No 173
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=29.78 E-value=20 Score=27.69 Aligned_cols=42 Identities=7% Similarity=0.286 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
+....+.|....|-. -...+||+..|++...|-..|.|+-.=
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 61 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKDEL 61 (203)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHHHH
Confidence 445555677776543 357789999999999999999997654
No 174
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.76 E-value=32 Score=27.04 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
-+..-.+.|....|-. .....||+..|++...|-..|.|+..=..
T Consensus 16 Il~aA~~lF~~~Gy~~-ts~~~IA~~aGvsk~tlY~~F~sKe~L~~ 60 (202)
T 2i10_A 16 ALQTAMELFWRQGYEG-TSITDLTKALGINPPSLYAAFGSKRDLFE 60 (202)
T ss_dssp HHHHHHHHHHHHTTTT-CCHHHHHHHHTCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCChHHHHHHhCCHHHHHH
Confidence 3555566688777653 34778999999999999999998765443
No 175
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=29.53 E-value=20 Score=23.82 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.7
Q ss_pred HHHHHHHhCCccchhhhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQNRR 166 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRR 166 (256)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998876
No 176
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.47 E-value=30 Score=28.91 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=36.5
Q ss_pred ccccCHHH-HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 118 RTTFSNFQ-LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 118 Rt~ft~~Q-l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
|...+.++ +..-.+.|....|- .-...+||+++|++...|-..|.||-.=..-
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~-~~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~a 69 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLE-KVTMRRLAQELDTGPASLYVYVANTAELHAA 69 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSS-SCCHHHHHHHTTSCHHHHTTTCCSHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCch-hcCHHHHHHHHCCChhHHHHHcCCHHHHHHH
Confidence 33444443 44555667777654 3357789999999999999999996654443
No 177
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=29.42 E-value=59 Score=23.30 Aligned_cols=45 Identities=7% Similarity=-0.084 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCC-------ccchhhhhhhh
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDL-------TEARVQVWFQN 164 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgL-------s~~qVqvWFQN 164 (256)
.++.++...+.+.+..++..+..++.......|+ +...|..|++.
T Consensus 75 ~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 75 IATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp SSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 4666677777777766666665544332222274 77788888753
No 178
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=29.24 E-value=32 Score=19.63 Aligned_cols=15 Identities=33% Similarity=0.951 Sum_probs=11.4
Q ss_pred hhhhHHHHHHHHhhh
Q psy2704 163 QNRRAKWRKQEKLVS 177 (256)
Q Consensus 163 QNRRaK~rk~~~~~~ 177 (256)
.|||-+||+.+.+..
T Consensus 7 RnRRRRWR~Rq~qi~ 21 (26)
T 1etf_B 7 RNRRRRWRERQRAAA 21 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 588999988777653
No 179
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=29.16 E-value=71 Score=24.17 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=29.7
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhh
Q psy2704 120 TFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQN 164 (256)
.++.++.......+.. .+ -..++|+.+|++...|..|++.
T Consensus 32 ~~s~e~r~~iv~~~~~-G~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 32 PLPDVVRQRIVELAHQ-GV----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 5777776666666643 32 2567899999999999999964
No 180
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=29.13 E-value=37 Score=27.22 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
-+....+.|....|-. -...+||+..|++...|-..|.++-.=.
T Consensus 35 Il~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sKe~Ll 78 (230)
T 2iai_A 35 LLSVAVQVFIERGYDG-TSMEHLSKAAGISKSSIYHHVTGKEELL 78 (230)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHTTTCSSHHHHH
T ss_pred HHHHHHHHHHHcCccc-cCHHHHHHHHCCChhHHHHhCCCHHHHH
Confidence 4666677787777643 3477899999999999999999876543
No 181
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=29.12 E-value=74 Score=23.36 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=33.6
Q ss_pred CccccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--ccchhhhhh
Q psy2704 117 YRTTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDL--TEARVQVWF 162 (256)
Q Consensus 117 ~Rt~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgL--s~~qVqvWF 162 (256)
.+..++.+++..|...|. .+.+.+..+...+...+|+ +...++..|
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 356789999999999995 3567888888887777764 444555544
No 182
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=29.02 E-value=20 Score=27.42 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
-+....+.|....|-. -...+||+..|++...|-..|.|+-.
T Consensus 15 Il~aa~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 15 LLDTGYRIMAVKGFSG-VGLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHCCccc-CCHHHHHHHhCCChhhHHHHcCCHHH
Confidence 4556666787777643 34678999999999999999999766
No 183
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=28.78 E-value=25 Score=23.94 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.9
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988654
No 184
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=28.72 E-value=22 Score=27.70 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
-+....+.|....|-. ....+||+..|++...|-.+|.|+-.=..
T Consensus 17 Il~aA~~lf~e~G~~~-~t~~~IA~~agvsk~tlY~~F~sKe~L~~ 61 (192)
T 2fq4_A 17 ILSASYELLLESGFKA-VTVDKIAERAKVSKATIYKWWPNKAAVVM 61 (192)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHCCCHHHHHH
Confidence 3455555677777653 34778999999999999999998665443
No 185
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=28.61 E-value=38 Score=25.69 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
-+....+.|....|-. -...+||+..|++...+-.+|.|+..=
T Consensus 14 Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 56 (195)
T 3ppb_A 14 ILETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQL 56 (195)
T ss_dssp HHHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 4556666788777643 447789999999999999999997653
No 186
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.09 E-value=41 Score=26.44 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=30.4
Q ss_pred ccccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCcc
Q psy2704 118 RTTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDLTE 155 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgLs~ 155 (256)
++.+|.+|+..|++.|. .+.+.+..+...+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 45689999999999995 456889888888888887654
No 187
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=27.85 E-value=30 Score=27.06 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
+..-.+.|....|-.. ...+||+..|++...|-.+|.|+..=
T Consensus 23 l~aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L 64 (218)
T 3gzi_A 23 ILAARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEKL 64 (218)
T ss_dssp HHHHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 4555566877776543 46789999999999999999987653
No 188
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=27.79 E-value=61 Score=21.93 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=20.6
Q ss_pred HHHHHHHhCCccchhhhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQNRR 166 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRR 166 (256)
..+||..+|++...|..|..+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45899999999999999998876
No 189
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=27.60 E-value=28 Score=28.19 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~rk 171 (256)
+..-.+.|.... .-...+||+.+|++...+-..|.||-.=..-
T Consensus 17 l~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~ 59 (213)
T 2g7g_A 17 AEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAVVEL 59 (213)
T ss_dssp HHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHHHHH
Confidence 444555676655 4567889999999999999999987654433
No 190
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=27.55 E-value=84 Score=22.94 Aligned_cols=45 Identities=7% Similarity=-0.041 Sum_probs=35.1
Q ss_pred cccCHHHHHHHHHHHh----hCCCCCHHHHHHHHHHhCCccchhhhhhh
Q psy2704 119 TTFSNFQLEELERAFH----KTHYPDVFFREELALRIDLTEARVQVWFQ 163 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~----~~~yPs~~~r~~LA~~lgLs~~qVqvWFQ 163 (256)
..++.++...+++.|. .+.+.+..+...+-..+|+++..+...|.
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~ 55 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWE 55 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4578888999999985 35578888888888888988887776553
No 191
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=27.18 E-value=13 Score=30.10 Aligned_cols=43 Identities=7% Similarity=0.019 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 121 FSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 121 ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
++..+..+|...|. ......++|..+|++...|+.++..-|.|
T Consensus 199 L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 199 LDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45555556655442 23456789999999999999988755544
No 192
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=27.15 E-value=47 Score=24.28 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=33.4
Q ss_pred cccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCccchhhhhhh
Q psy2704 119 TTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDLTEARVQVWFQ 163 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgLs~~qVqvWFQ 163 (256)
..++.++...|++.|. .+.+.+..+...+....+++...|+.+|.
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4577888888999885 34577788777777777788877776664
No 193
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=26.93 E-value=25 Score=28.70 Aligned_cols=44 Identities=9% Similarity=0.204 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
-+....+.|....|-. .....||+..|++...|-.+|.|+-.=.
T Consensus 28 Il~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~L~ 71 (231)
T 2zcx_A 28 ILDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETREQIF 71 (231)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHH
Confidence 3555566687777643 3467899999999999999999976543
No 194
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.57 E-value=26 Score=28.23 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
-+..-.+.|....|-. -....||+..|++...|-..|.||-.=
T Consensus 21 il~aA~~l~~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~~K~~L 63 (216)
T 2oi8_A 21 IKDHAWEQIATAGASA-LSLNAIAKRMGMSGPALYRYFDGRDEL 63 (216)
T ss_dssp HHHHHHHHHHHHCTTS-CCHHHHHHHTTCCHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3455556677776643 346789999999999999999987543
No 195
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=26.48 E-value=22 Score=28.78 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
+....+.|....| ..-...+||+..|++...|-.+|.|+-.=.
T Consensus 19 l~AA~~l~~~~G~-~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll 61 (231)
T 2qib_A 19 IGVALDLFSRRSP-DEVSIDEIASAAGISRPLVYHYFPGKLSLY 61 (231)
T ss_dssp HHHHHHHHHHSCG-GGCCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCc-hhcCHHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 5555666877776 334577899999999999999999876543
No 196
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=26.13 E-value=26 Score=24.54 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=20.2
Q ss_pred HHHHHHHhCCccchhhhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQNRR 166 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRR 166 (256)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999998765
No 197
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=26.03 E-value=26 Score=23.63 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.9
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988753
No 198
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.73 E-value=21 Score=27.40 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
-+....+.|....|- .-...+||+..|++...+-.+|.|+..=..
T Consensus 13 Il~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (206)
T 3dew_A 13 LMEVATELFAQKGFY-GVSIRELAQAAGASISMISYHFGGKEGLYA 57 (206)
T ss_dssp HHHHHHHHHHHHCGG-GCCHHHHHHHHTCCHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHhcCCcc-cCcHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 355556667776653 334678999999999999999999765433
No 199
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.73 E-value=24 Score=23.66 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=20.8
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~~ 41 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSETA 41 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988653
No 200
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=25.72 E-value=37 Score=26.24 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
-+....+.|....|-.. ....||+..|++...|-..|.|+..=.
T Consensus 21 Il~aa~~lf~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 64 (213)
T 2qtq_A 21 LLQTASNIMREGDVVDI-SLSELSLRSGLNSALVKYYFGNKAGLL 64 (213)
T ss_dssp HHHHHHHHHHHHTSSCC-CHHHHHHHHCCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHHcCcccc-cHHHHHHHhCCChhhHhHhcCCHHHHH
Confidence 35556666777776433 467889999999999999999976533
No 201
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=25.58 E-value=95 Score=22.81 Aligned_cols=46 Identities=11% Similarity=0.233 Sum_probs=33.5
Q ss_pred cccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--ccchhhhhhhh
Q psy2704 119 TTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDL--TEARVQVWFQN 164 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgL--s~~qVqvWFQN 164 (256)
..++.+++..|+..|. .+.+.+..+...+...+|+ +...|..+|++
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE 62 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 4588899999999994 4568899988888887764 45566666653
No 202
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=25.51 E-value=36 Score=25.96 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
-+....+.|....|-. -....||+..|++...+-..|.|+-.=.
T Consensus 16 il~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~ 59 (196)
T 3he0_A 16 ILAAAEQLIAESGFQG-LSMQKLANEAGVAAGTIYRYFSDKEHLL 59 (196)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCcchHHHhcCCHHHHH
Confidence 4556666787777643 4577899999999999999999976543
No 203
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=25.34 E-value=27 Score=23.62 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.7
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|-.+++.
T Consensus 30 q~elA~~~gis~~~is~~e~g~~~ 53 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAERR 53 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCC
Confidence 467999999999999999988753
No 204
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=25.33 E-value=70 Score=23.49 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=33.7
Q ss_pred ccccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--ccchhhhhhh
Q psy2704 118 RTTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDL--TEARVQVWFQ 163 (256)
Q Consensus 118 Rt~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgL--s~~qVqvWFQ 163 (256)
++.++..++..|...|. .+.+.+..+...+...+|+ +..+|+..|.
T Consensus 7 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 56799999999999995 3568888888887777764 4445555543
No 205
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=24.93 E-value=38 Score=26.28 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
-+....+.|....|-. -...+||+..|++...|-..|.|+-.
T Consensus 22 Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (207)
T 2rae_A 22 ISTVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKNA 63 (207)
T ss_dssp HHHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTTT
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHHH
Confidence 3555566677777643 34678999999999999999998753
No 206
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=24.84 E-value=27 Score=27.43 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=32.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
+..-.+.|....|-.. ...+||+..|++...|-.+|.|+..=
T Consensus 16 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~~t~Y~~F~sKe~L 57 (210)
T 3vib_A 16 MLAALETFYRKGIART-SLNEIAQAAGVTRDALYWHFKNKEDL 57 (210)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHHCcCHHHHHHHCCCHHHH
Confidence 4445566887776543 46789999999999999999997653
No 207
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=24.69 E-value=25 Score=27.18 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
-+....+.|....|- .-...+||+..|++...+-.+|.|+..=
T Consensus 17 Il~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 59 (202)
T 3lwj_A 17 ILTCSLDLFIEKGYY-NTSIRDIIALSEVGTGTFYNYFVDKEDI 59 (202)
T ss_dssp HHHHHHHHHHHHCTT-TCCHHHHHHHHCSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHcCcc-cCCHHHHHHHhCCCchhHHHHcCCHHHH
Confidence 345556667777763 3457789999999999999999987643
No 208
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=24.44 E-value=30 Score=28.43 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=19.4
Q ss_pred HHHHHHHhCCccchhhhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQNRR 166 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRR 166 (256)
..+||+.+|++...|..|..+++
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 209
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=24.40 E-value=31 Score=26.57 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 124 FQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 124 ~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
.-+....+.|....|- .-...+||+..|++...+-.+|.||-.=
T Consensus 20 ~Il~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 63 (211)
T 3him_A 20 RIRAAAIEVFAAKGYG-ATTTREIAASLDMSPGAVYPHYKTKESL 63 (211)
T ss_dssp HHHHHHHHHHHHHCST-TCCHHHHHHHTTCCTTSSTTTCSSHHHH
T ss_pred HHHHHHHHHHHHcCCC-cCCHHHHHHHhCCCcChhhhcCCCHHHH
Confidence 3455666668777764 3457789999999999999999987653
No 210
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=24.40 E-value=97 Score=23.04 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=34.5
Q ss_pred ccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC---ccchhhhhhhh
Q psy2704 120 TFSNFQLEELERAFH-----KTHYPDVFFREELALRIDL---TEARVQVWFQN 164 (256)
Q Consensus 120 ~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgL---s~~qVqvWFQN 164 (256)
.++..++..|...|. .+.+.+..+...+...+|+ +...|..+|++
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 578899999999995 3568888888888888866 55567766653
No 211
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=24.31 E-value=26 Score=27.21 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
-+....+.|....|- .-....||++.|++...|-..|.|+..=
T Consensus 23 Il~aa~~l~~~~G~~-~~s~~~Ia~~agvs~~t~Y~~F~sK~~L 65 (212)
T 1pb6_A 23 ILSAALDTFSQFGFH-GTRLEQIAELAGVSKTNLLYYFPSKEAL 65 (212)
T ss_dssp HHHHHHHHHHHHCTT-TCCHHHHHHHTTSCHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHHHcCcc-hhhHHHHHHHHCCChhHHHHhCCCHHHH
Confidence 355555667777653 3457789999999999999999997654
No 212
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.20 E-value=21 Score=28.08 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
+..-.+.|....|- .....+||+..|++...|-.+|.||..=.
T Consensus 15 l~AA~~lf~~~G~~-~~s~~~IA~~AGvs~gtlY~~F~sKe~L~ 57 (203)
T 2np5_A 15 AAALFDVAAESGLE-GASVREVAKRAGVSIGAVQHHFSTKDEMF 57 (203)
T ss_dssp HHHHHHHHHHHCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhChh-hccHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 55555667777654 33477899999999999999999976543
No 213
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=23.94 E-value=34 Score=22.89 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.1
Q ss_pred HHHHHHHhCCccchhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQN 164 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQN 164 (256)
..++|..||++...|..|-++
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467899999999999999865
No 214
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=23.69 E-value=40 Score=26.52 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=33.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
+..-.+.|....|-. ....+||+..|++...|-.+|.|+..=..
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L~~ 60 (210)
T 2wui_A 17 LDAAERVFLEKGVGT-TAMADLADAAGVSRGAVYGHYKNKIEVCL 60 (210)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 444556688887654 34678899999999999999998766443
No 215
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=23.66 E-value=1e+02 Score=22.14 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=29.7
Q ss_pred cCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--ccchhhhhhh
Q psy2704 121 FSNFQLEELERAFH-----KTHYPDVFFREELALRIDL--TEARVQVWFQ 163 (256)
Q Consensus 121 ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgL--s~~qVqvWFQ 163 (256)
++.+++..|++.|. .+.+.+..+...+...+|+ +...+..+|+
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~ 51 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILG 51 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 56788888888884 3557888887777776664 4455666663
No 216
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=23.49 E-value=28 Score=26.54 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
-+..-.+.|....|- .-...+||+..|++...|-..|.|+..=
T Consensus 17 Il~aA~~lf~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~L 59 (199)
T 3on2_A 17 LLARAESTLEKDGVD-GLSLRQLAREAGVSHAAPSKHFRDRQAL 59 (199)
T ss_dssp HHHHHHHHHHHHCGG-GCCHHHHHHHTC-----CCCSSSSHHHH
T ss_pred HHHHHHHHHHhcChh-hhhHHHHHHHhCCChHHHHHHhCCHHHH
Confidence 345555667766653 2346789999999999999999987653
No 217
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=23.28 E-value=19 Score=29.54 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
+....+.|....|-. -...+||+..|++...|-.+|.|+..=.
T Consensus 52 l~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll 94 (245)
T 3aqt_A 52 ITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQLL 94 (245)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHH
T ss_pred HHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 555556677766543 3467899999999999999999976544
No 218
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=23.22 E-value=33 Score=26.80 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
-+....+.|....|-. -....||+..|++...+-..|.|+..=
T Consensus 16 Il~aA~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 58 (216)
T 3f0c_A 16 IINAAQKRFAHYGLCK-TTMNEIASDVGMGKASLYYYFPDKETL 58 (216)
T ss_dssp HHHHHHHHHHHHCSSS-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHcCCCc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3555566687777643 346789999999999999999997653
No 219
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=23.07 E-value=28 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=17.7
Q ss_pred HHHHHHHhCCccchhhhhh
Q psy2704 144 REELALRIDLTEARVQVWF 162 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWF 162 (256)
..+||+.||++...|..|+
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4789999999999999998
No 220
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=22.97 E-value=38 Score=26.76 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
-+..-.+.|....|-. .....||+..|++...|-..|.|+..=.
T Consensus 16 Il~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L~ 59 (219)
T 2w53_A 16 ILDAAEACFHEHGVAR-TTLEMIGARAGYTRGAVYWHFKNKSEVL 59 (219)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCchHHhhcCCCHHHHH
Confidence 3555666788777653 3477899999999999999999976543
No 221
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=22.96 E-value=32 Score=23.76 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.7
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~~ 56 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGINA 56 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999988653
No 222
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=22.60 E-value=29 Score=27.89 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=32.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
+....+.|....|- .....+||+..|++...|-..|.|+-.=.
T Consensus 45 l~AA~~lf~e~G~~-~~tv~~IA~~AGvs~~tlY~~F~sKe~Ll 87 (214)
T 2guh_A 45 VDAAGRAFATRPYR-EITLKDIAEDAGVSAPLIIKYFGSKEQLF 87 (214)
T ss_dssp HHHHHHHHHHSCGG-GCCHHHHHHHHTSCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHcChh-hcCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 45555667777754 33467899999999999999999865543
No 223
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.38 E-value=1.4e+02 Score=20.65 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=27.9
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhh
Q psy2704 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQV 160 (256)
Q Consensus 119 t~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqv 160 (256)
..+|.++...|++....-+--+...=+.||..+|=+..+|+.
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~ 50 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTT 50 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHH
Confidence 458999999999997654421222224588888866666653
No 224
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=22.18 E-value=40 Score=25.79 Aligned_cols=44 Identities=5% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
-+..-.+.|....|-. -...+||+..|++...|-.+|.|+..=.
T Consensus 13 Il~aA~~l~~~~G~~~-~t~~~IA~~Agvs~~tly~~F~sK~~L~ 56 (194)
T 3dpj_A 13 IVAAADELFYRQGFAQ-TSFVDISAAVGISRGNFYYHFKTKDEIL 56 (194)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHHCCChHHHHHHcCCHHHHH
Confidence 3455556677776543 3467899999999999999999876543
No 225
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=22.14 E-value=37 Score=21.98 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=18.6
Q ss_pred HHHHHHHhCCccchhhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQNR 165 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNR 165 (256)
..++|+.+|++...|..|.+++
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999998543
No 226
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=22.10 E-value=31 Score=26.72 Aligned_cols=44 Identities=9% Similarity=0.016 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~ 169 (256)
-+....+.|....|- .-...+||+..|++...|-.+|.|+..=.
T Consensus 14 Il~aa~~l~~~~G~~-~~ti~~IA~~agvs~~t~Y~~F~sK~~L~ 57 (193)
T 2dg8_A 14 ILAATLDLIAEEGIA-RVSHRRIAQRAGVPLGSMTYHFTGIEQLL 57 (193)
T ss_dssp HHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHhChh-hccHHHHHHHhCCCchhhheeCCCHHHHH
Confidence 455566667777753 34477899999999999999999876543
No 227
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=21.98 E-value=33 Score=24.54 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=21.7
Q ss_pred HHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
..+||..+|++...|..|..+++..
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~~s 64 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNENVS 64 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCCCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCcC
Confidence 5689999999999999999987643
No 228
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=21.91 E-value=81 Score=21.19 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhC--Cccchhhhhhh
Q psy2704 123 NFQLEELERAFH-----KTHYPDVFFREELALRID--LTEARVQVWFQ 163 (256)
Q Consensus 123 ~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lg--Ls~~qVqvWFQ 163 (256)
..+...|...|. .+.+.+..+...+...+| ++..+|+.+|+
T Consensus 5 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 52 (92)
T 2kn2_A 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIK 52 (92)
T ss_dssp CHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345566666663 344677777777777776 45555655553
No 229
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=21.85 E-value=35 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~~ 52 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRAI 52 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999988763
No 230
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=21.81 E-value=79 Score=29.79 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=35.5
Q ss_pred CccccCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--ccchhhhhh
Q psy2704 117 YRTTFSNFQLEELERAFH-----KTHYPDVFFREELALRIDL--TEARVQVWF 162 (256)
Q Consensus 117 ~Rt~ft~~Ql~~Le~~F~-----~~~yPs~~~r~~LA~~lgL--s~~qVqvWF 162 (256)
.+..|+.+|+..|++.|. .+.+.+..+...+.+.||+ ++.+|+..|
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 367899999999999994 5668889988888888775 445555544
No 231
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=21.64 E-value=37 Score=27.11 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=31.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 126 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
+..-.+.|....|-. -....||+..|++...|-.+|.||-.
T Consensus 20 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~ 60 (208)
T 3v6g_A 20 VEAAERVIARQGLGG-LSHRRVAAEANVPVGSTTYYFNDLDA 60 (208)
T ss_dssp HHHHHHHHHHHCTTC-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCchhHHHHcCCHHH
Confidence 455556687777643 34678999999999999999998754
No 232
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=21.49 E-value=34 Score=23.06 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.1
Q ss_pred HHHHHHHhCCccchhhhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQNRR 166 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRR 166 (256)
..+||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46799999999999999998864
No 233
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=21.15 E-value=35 Score=23.91 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.2
Q ss_pred HHHHHHHhCCccchhhhhhhhhhH
Q psy2704 144 REELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
..+||..+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999998765
No 234
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=21.03 E-value=35 Score=26.43 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRa 167 (256)
-+....+.|....|-. -...+||+..|++...|-..|.|+-.
T Consensus 19 Il~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~ 60 (212)
T 3knw_A 19 ILDSGFHLVLRKGFVG-VGLQEILKTSGVPKGSFYHYFESKEA 60 (212)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHcCCcc-CCHHHHHHHhCCChHHHHHHCCCHHH
Confidence 3555566677776543 34678999999999999999998765
No 235
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=21.01 E-value=36 Score=23.16 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.1
Q ss_pred HHHHHHHhCCccchhhhhhhh
Q psy2704 144 REELALRIDLTEARVQVWFQN 164 (256)
Q Consensus 144 r~~LA~~lgLs~~qVqvWFQN 164 (256)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999988
No 236
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=20.30 E-value=1.1e+02 Score=23.72 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=30.4
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHHHH
Q psy2704 121 FSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170 (256)
Q Consensus 121 ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK~r 170 (256)
++..+.++|+..... + ...++|..++++++.|++...|=|.|..
T Consensus 143 Lt~rE~~vl~~l~~g--~----s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 143 LTGREQQVLQLTIRG--L----MNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp SCHHHHHHHHHHTTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHcC--C----cHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 566666666554321 1 3467899999999999988777666653
No 237
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=20.20 E-value=60 Score=25.75 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCccchhhhhhhhhhHH
Q psy2704 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168 (256)
Q Consensus 125 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qVqvWFQNRRaK 168 (256)
-+..-.+.|....|-. ....+||+..|++...|-..|.|+-.=
T Consensus 14 Il~aA~~lf~~~Gy~~-ts~~~IA~~AGvskgtlY~~F~sKe~L 56 (215)
T 1ui5_A 14 IIGAAADLFDRRGYES-TTLSEIVAHAGVTKGALYFHFAAKEDL 56 (215)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCchhhHhhCCCHHHH
Confidence 4556666788877743 347789999999999999999987643
Done!