RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2704
(256 letters)
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 154 bits (391), Expect = 1e-48
Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
+ +R RT+F+ Q+E LE+ F +THYPDVF RE LA +IDL EAR+QVWF NRRAK
Sbjct: 2 SSGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 61
Query: 169 WRKQEKLVSKQPQELFSS 186
WR++EKL +++ Q SS
Sbjct: 62 WRREEKLRNQRRQSGPSS 79
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 154 bits (391), Expect = 1e-48
Identities = 48/76 (63%), Positives = 55/76 (72%)
Query: 102 ESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVW 161
KRKQRR RTTFS QL+ELERAF +T YPD++ REELA R +LTEAR+QVW
Sbjct: 6 CESEPGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVW 65
Query: 162 FQNRRAKWRKQEKLVS 177
FQNRRA+ RKQ VS
Sbjct: 66 FQNRRARLRKQHTSVS 81
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 152 bits (385), Expect = 6e-48
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
+ RR+RT F++ QLE LE F +T YPDV RE+LA ++ L E +V+VWF+NRRAK
Sbjct: 2 SSGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAK 61
Query: 169 WRKQEK 174
WR+
Sbjct: 62 WRRSGP 67
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 151 bits (383), Expect = 2e-47
Identities = 41/78 (52%), Positives = 53/78 (67%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
+ RR RTTF+ QL+ LE F KT YPD+F REE+AL+I+L E+RVQVWF+NRRAK
Sbjct: 2 SSGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAK 61
Query: 169 WRKQEKLVSKQPQELFSS 186
R+Q++ Q SS
Sbjct: 62 CRQQQQQQQNGGQSGPSS 79
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 150 bits (380), Expect = 4e-47
Identities = 36/64 (56%), Positives = 50/64 (78%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
QRR RT F++ QL++LE F + YPD+ REE+A+ +LTEARV+VWF+NRRAKWRK+
Sbjct: 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61
Query: 173 EKLV 176
E+ +
Sbjct: 62 EEFI 65
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant,
DNA binding protein, developmental protein, disease
mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 142 bits (360), Expect = 4e-44
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174
RR RT F+ Q+E LE F YP + E+LA +++L R+Q+WFQNRRAK ++ +
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61
Query: 175 LVSKQ 179
Sbjct: 62 ESQFL 66
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 141 bits (359), Expect = 4e-44
Identities = 45/58 (77%), Positives = 53/58 (91%)
Query: 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKL 175
TF++FQLEELE+AF +THYPDVF REELA++I LTEAR+QVWFQNRRAKWRKQEK+
Sbjct: 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV 60
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 139 bits (352), Expect = 8e-43
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
+ +R RT+F + QL ++ F H PD ++LA + LT+ +QVWFQN RAK
Sbjct: 2 SSGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK 61
Query: 169 WRKQEKLVSKQPQELFSS 186
+R+ SS
Sbjct: 62 FRRNLLRQENGGVSGPSS 79
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 136 bits (344), Expect = 1e-41
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
+ R RT F+++QL L+ F YP E+L+ ++L + VWFQN R K
Sbjct: 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQK 61
Query: 169 WRKQEK 174
RK
Sbjct: 62 ARKSGP 67
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 132 bits (333), Expect = 5e-40
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
K R RT + QL L + PD +E+L L+ ++VWFQN+R K +K+
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 173 EKLV 176
++
Sbjct: 62 SIMM 65
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 124 bits (312), Expect = 7e-37
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 115 RRYRTTFSNFQLEELERAFHKTH-YPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173
T + Q+E LE F+K + +PD +A LTE + Q WF+ R A+WR+ E
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 174 KLVSKQ 179
L S+
Sbjct: 62 GLPSEC 67
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 123 bits (311), Expect = 1e-36
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 100 TPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQ 159
+ S T ++ +R RTT + QLE L + + P + +A + L + VQ
Sbjct: 3 SGSSGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62
Query: 160 VWFQNRRAKWRKQEK 174
VWFQN RA+ RK
Sbjct: 63 VWFQNTRARERKSGP 77
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 116 bits (293), Expect = 5e-34
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 115 RRYRTTFSNFQLEELERAFHKTH-YPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173
+ + + Q+E LE F+K + +PD +A LTE + Q WF+ R A+WR+ E
Sbjct: 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62
Query: 174 KLVSK 178
L S+
Sbjct: 63 GLPSE 67
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 113 bits (284), Expect = 1e-32
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 110 GKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169
+R RT ++ QL L + F + P +E+A + L + ++ WF+N K
Sbjct: 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKE 62
Query: 170 RKQEK 174
R+
Sbjct: 63 RQSGP 67
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 110 bits (275), Expect = 4e-31
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRID---------------L 153
+ R R T+ L +E F++ YPD REE+A + +
Sbjct: 2 SSGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERV 61
Query: 154 TEARVQVWFQNRRAKWRKQEKLVSKQPQELFSS 186
T +V WF NRR + +++ + + SS
Sbjct: 62 TSLKVYNWFANRRKEIKRRANIAAILESSGPSS 94
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 99.0 bits (247), Expect = 3e-27
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 108 QTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167
+G Y+ S+ QL L+ +F + +P E L L+ V+ WF +RR
Sbjct: 2 SSGSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRY 61
Query: 168 KWRKQEK 174
R +
Sbjct: 62 HCRNLKG 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 98.9 bits (246), Expect = 3e-26
Identities = 20/92 (21%), Positives = 32/92 (34%)
Query: 80 STSPQVSPSSPPTLCFSPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYP 139
P + + K+R+ RT+F+ +E L F K P
Sbjct: 59 KLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLP 118
Query: 140 DVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
E+A ++ V+VWF NRR +
Sbjct: 119 TGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 93.9 bits (233), Expect = 4e-24
Identities = 19/80 (23%), Positives = 32/80 (40%)
Query: 98 TPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEAR 157
+ + + + ++R+ RT+ LE F K P LA + L +
Sbjct: 83 SSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEV 142
Query: 158 VQVWFQNRRAKWRKQEKLVS 177
V+VWF NRR K ++
Sbjct: 143 VRVWFCNRRQKEKRMTPAAG 162
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 93.1 bits (231), Expect = 6e-24
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Query: 62 TLQQSCSANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQTGKRKQRRYRTTF 121
Q+ F+ + + + ++ L + +RK R+ RTT
Sbjct: 37 EFSQTTICRFENLQL-SFKNACKLKAILSKWLEEAEQVGALYNEKVGANERK-RKRRTTI 94
Query: 122 SNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
S + LER F + P +A ++L + V+VWF NRR + ++
Sbjct: 95 SIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 90.6 bits (225), Expect = 7e-24
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 102 ESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVW 161
S T +K RR RT F+ QL LE+ F K Y R +LA + L++ +V+ W
Sbjct: 5 SSGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTW 64
Query: 162 FQNRRAKWRKQEK 174
+QNRR KW+K
Sbjct: 65 YQNRRMKWKKSGP 77
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 89.9 bits (223), Expect = 2e-23
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 105 PTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQN 164
P Q K+++ RT+F+ Q+ ELE+ FHK Y R LA + +T+A+V+ WFQN
Sbjct: 8 PYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQN 67
Query: 165 RRAKWRKQEKLVSKQPQE 182
RR KWR+Q + ++
Sbjct: 68 RRTKWRRQTAEEREAERQ 85
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 90.9 bits (225), Expect = 4e-23
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 94 CFSPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDL 153
+ +T + ++R RT+ N LE F K+ P + +A ++ L
Sbjct: 76 EADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGL 135
Query: 154 TEARVQVWFQNRRAKWRK 171
+ V+VWF NRR K ++
Sbjct: 136 EKDVVRVWFSNRRQKGKR 153
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 69
Score = 87.8 bits (218), Expect = 7e-23
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
+ + S+ Q+ ELER F Y R LA + LTE +V++WFQNRR K +++
Sbjct: 3 HHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62
Query: 173 EK 174
+
Sbjct: 63 QL 64
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 87.5 bits (217), Expect = 8e-23
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
+ + + FSN Q ELE+ F Y R+ LA + L+E +V+ WFQNRRAK
Sbjct: 2 SSGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 61
Query: 169 WRKQEK 174
WR+
Sbjct: 62 WRRSGP 67
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 86.3 bits (214), Expect = 3e-22
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
+ R+ RT +S+FQL L+R F KT Y + R ELA + LT+ +V++WFQN+R+K
Sbjct: 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 61
Query: 169 WRKQEK 174
+K
Sbjct: 62 IKKSGP 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 86.0 bits (213), Expect = 3e-22
Identities = 10/62 (16%), Positives = 25/62 (40%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
+ + Q+ L+ +F ++ +PD L L + ++ WF + R + ++
Sbjct: 3 HHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62
Query: 173 EK 174
Sbjct: 63 IV 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 88.9 bits (220), Expect = 3e-22
Identities = 21/109 (19%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 64 QQSCSANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPT-QQTGKRKQRRYRTTFS 122
++ + +F+ + K P ++ + S +P + + G ++R+ RT+
Sbjct: 50 FEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIE 109
Query: 123 NFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
LE++F + P +A ++++ + ++VWF NRR K ++
Sbjct: 110 TNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics; NMR {Homo sapiens}
Length = 84
Score = 85.2 bits (211), Expect = 8e-22
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 96 SPTPTPESPPTQQTGK-RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLT 154
PT S ++ K+++ RT FS+ QL L F + Y + +EL+ ++L+
Sbjct: 3 QPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLS 62
Query: 155 EARVQVWFQNRRAKWRKQEK 174
+V+ WFQN+R K ++ +K
Sbjct: 63 YKQVKTWFQNQRMKSKRWQK 82
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein, transcription
regulation, NUC homeobox; 2.6A {Mus musculus}
Length = 62
Score = 84.3 bits (209), Expect = 1e-21
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
+++ RT FS QL L+ F K Y + +EL+ ++L+ +V+ WFQN+R K ++
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61
Query: 173 E 173
+
Sbjct: 62 Q 62
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 84.3 bits (209), Expect = 1e-21
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173
+R+ R FS Q+ ELER F + Y RE LA I LT +V++WFQN R K ++Q
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 174 K 174
K
Sbjct: 62 K 62
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 84.4 bits (209), Expect = 2e-21
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 107 QQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRR 166
K+R+ R F+ Q ELER F + Y RE LA I LT +V++WFQN R
Sbjct: 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 61
Query: 167 AKWRKQEK 174
K ++ +
Sbjct: 62 YKTKRAQN 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 84.9 bits (209), Expect = 2e-21
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 21/88 (23%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRID------------------ 152
+K RR R + + L +A+ + P RE L +
Sbjct: 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLG 65
Query: 153 ---LTEARVQVWFQNRRAKWRKQEKLVS 177
+TE RV WF NRR + + KL
Sbjct: 66 SNLVTEVRVYNWFANRRKEEAFRHKLAM 93
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 83.8 bits (208), Expect = 2e-21
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 111 KRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
K K + +++ S LE F + + +EE+A + +T +V+VWF N+R + +
Sbjct: 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 81.9 bits (203), Expect = 9e-21
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
R+ RT F+ QL LER F + Y + R E + + LTE +V++WFQNRRAK ++
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 81.3 bits (201), Expect = 2e-20
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173
RR RTTF++ Q+ ELE+ F + Y +L+ ++ L A+V++WF+NRR + + Q
Sbjct: 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61
Query: 174 K 174
Sbjct: 62 D 62
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 80.0 bits (198), Expect = 4e-20
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
+R+ R FS Q+ ELER F + Y R++LA + LT +V++WFQNRR K +
Sbjct: 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 81.5 bits (201), Expect = 4e-20
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 85 VSPSSPPTLCF----SPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPD 140
+ P++P F P++ + G RT F+ QL ELE+ FH Y
Sbjct: 1 MEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLS 60
Query: 141 VFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174
R E+A ++L E +V++WFQNRR K +K+E+
Sbjct: 61 RARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 79.7 bits (197), Expect = 6e-20
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173
RRYRT F+ QL LE+ F+K +Y R ELA +++L E+ ++VWFQNRR K ++Q
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQR 60
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 83.5 bits (205), Expect = 1e-19
Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 21/126 (16%)
Query: 64 QQSCSANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQTGKRKQRRYRTTFSN 123
+Q + S+ Q+ P S P + +K RR R +
Sbjct: 92 RQFNQTVQSSGNMTDKSSQDQLLFLFPEFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGP 151
Query: 124 FQLEELERAFHKTHYPDVFFREELALRID---------------------LTEARVQVWF 162
+ L +A+ + P RE L + +TE RV WF
Sbjct: 152 ASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWF 211
Query: 163 QNRRAK 168
NRR +
Sbjct: 212 ANRRKE 217
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 78.5 bits (194), Expect = 1e-19
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 119 TTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
T+FS Q+ ELER F + Y R LA + +T+A+V+ WFQNRR KWR+Q
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 82.6 bits (203), Expect = 2e-19
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 21/94 (22%)
Query: 96 SPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRID--- 152
E P + +K RR R + + L +A+ + P RE L +
Sbjct: 97 GQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAE 156
Query: 153 ------------------LTEARVQVWFQNRRAK 168
+TE RV WF NRR +
Sbjct: 157 CIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 78.1 bits (193), Expect = 2e-19
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
++R RT FS+ QL L+R F++ Y R++L+ + L EA++++WF+N+RAK +K
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 78.3 bits (193), Expect = 3e-19
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKT-HYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
R RT S L L+ H YPD L+ ++DL + + +FQN+R +
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65
Query: 172 QEK 174
Sbjct: 66 SGP 68
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 76.8 bits (189), Expect = 1e-18
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 103 SPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWF 162
+ + +R RT+++ +Q ELE+ FH Y R E+A + LTE ++++WF
Sbjct: 17 LGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWF 76
Query: 163 QNRRAKWRKQEK 174
QNRR KW+K+ K
Sbjct: 77 QNRRMKWKKEHK 88
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 75.9 bits (187), Expect = 2e-18
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173
++R R T++ +Q ELE+ FH Y R E+A + LTE ++++WFQNRR KW+K+
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61
Query: 174 K 174
K
Sbjct: 62 K 62
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA
complex, transcription/DNA complex; 2.42A {Mesocricetus
auratus}
Length = 63
Score = 75.9 bits (187), Expect = 2e-18
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
+R RT ++ QL ELE+ F Y R ELA+ ++LTE +++WFQNRR KW+K+
Sbjct: 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61
Query: 173 E 173
E
Sbjct: 62 E 62
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 70
Score = 74.9 bits (184), Expect = 5e-18
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
+ R+ R +S QL ELER + + R +++ L+E ++ +WFQNRR K
Sbjct: 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 61
Query: 169 WRKQEK 174
+K
Sbjct: 62 EKKSGP 67
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 74.8 bits (184), Expect = 7e-18
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 98 TPTPESPPTQQTGK-RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEA 156
+ P G +RR R T++ +Q ELE+ FH HY R E+A + LTE
Sbjct: 3 SNHTFYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTER 62
Query: 157 RVQVWFQNRRAKWRKQEK 174
++++WFQNRR K +K+ +
Sbjct: 63 QIKIWFQNRRMKLKKEIQ 80
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex,
HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 73.7 bits (181), Expect = 2e-17
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 103 SPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWF 162
+P R R+ R ++ Q ELE+ F Y R E+A ++LTE +V++WF
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 61
Query: 163 QNRRAKWRKQEKLVSK 178
QNRR K +K K +K
Sbjct: 62 QNRRMKMKKINKDRAK 77
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB:
2ld5_A*
Length = 73
Score = 73.0 bits (179), Expect = 4e-17
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
+ R+ R ++ QL+ELER + + R ++ +L+E +V +WFQNRR K +K
Sbjct: 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 64
Query: 172 QEK 174
Sbjct: 65 VIN 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 74.1 bits (181), Expect = 1e-16
Identities = 11/81 (13%), Positives = 27/81 (33%)
Query: 94 CFSPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDL 153
+ + ++ R F++ Q L F + P + ++ ++ L
Sbjct: 77 LRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGL 136
Query: 154 TEARVQVWFQNRRAKWRKQEK 174
+ V +F N R + +
Sbjct: 137 ELSTVSNFFMNARRRSLDKWL 157
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 71.2 bits (174), Expect = 2e-16
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 96 SPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTE 155
S P+ P + K + Q++ LE +F K+ +P + L + L+
Sbjct: 5 SSGAYPDFAPQKFKEKTQG----------QVKILEDSFLKSSFPTQAELDRLRVETKLSR 54
Query: 156 ARVQVWFQNRRAKWRKQEKLVSKQPQELFSSP 187
+ WF RR E+ V S P
Sbjct: 55 REIDSWFSERRKLRDSMEQAVLDSMGSGKSGP 86
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 66.8 bits (163), Expect = 6e-15
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 106 TQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNR 165
+ +G K + + QL LE +F + P + L +T + WF R
Sbjct: 3 SGSSGPTKYKE----RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSER 58
Query: 166 RAKWRKQEK 174
R K +E
Sbjct: 59 RKKVNAEET 67
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 66.2 bits (161), Expect = 2e-14
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
Q+ T QL L+ +F + L + LT + WF ++ +
Sbjct: 12 PQKFKEKTAE--QLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69
Query: 173 EKLVSKQPQELFSSPLQSPA 192
E+ + SS S
Sbjct: 70 EEKMEIDESNAGSSSGPSSG 89
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 54.8 bits (131), Expect = 4e-10
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 82 SPQVSPSSPPTLCFSPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDV 141
+ S P P+S T + K+ QL L+ AF +T +P
Sbjct: 2 AHHHHHHSSGLEVLFQGPAPKSGSTGKICKKTPE---------QLHMLKSAFVRTQWPSP 52
Query: 142 FFREELALRIDLTEARVQVWFQNRRAKWRK 171
++LA L + WF + R W+
Sbjct: 53 EEYDKLAKESGLARTDIVSWFGDTRYAWKN 82
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 52.5 bits (126), Expect = 1e-09
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 110 GKRKQRRYRTTFSNFQLEELERAF-HKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
G + + + LE+ F T YPD + L+ ++D + ++Q WF++RR +
Sbjct: 8 GIKDSPVNKVE----PNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 63
Query: 169 WRK 171
+
Sbjct: 64 DKP 66
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 45.8 bits (108), Expect = 3e-07
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
+ QL L+ F + + ++L L + WF + R +
Sbjct: 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 45.3 bits (106), Expect = 7e-07
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHK----THYPDVFFREELALRIDLTEARVQVWFQN 164
+G + RT FS+ L L++ + E +A +++ V+ W N
Sbjct: 3 SGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGN 62
Query: 165 RRAKWRKQEK 174
RR K+R
Sbjct: 63 RRRKYRLMGI 72
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 64
Score = 44.0 bits (104), Expect = 1e-06
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 125 QLEELERAF-HKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
LE+ F T +PD E L+ ++D +Q WF+ RR + +
Sbjct: 11 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 38.8 bits (90), Expect = 1e-04
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 98 TPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHY----PDVFFREELALRIDL 153
+ + S P+ G K R+RT F+ Q E++ + + D E+ +
Sbjct: 3 SGSSGSNPSSSGGTTK--RFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGV 60
Query: 154 TEARVQVWFQNRRAKWRK 171
+++W N +
Sbjct: 61 RRQVLKIWMHNNKNSGPS 78
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.001
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 26/86 (30%)
Query: 101 PESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELAL--RIDLTEARV 158
PES RK R + +L+EL+ A +E + DL E
Sbjct: 84 PES-------IRKWREEQRK----RLQELDAASKVM-------EQEWREKAKKDLEE--- 122
Query: 159 QVWFQNRRAKWRKQEKLVSKQPQELF 184
W Q + + K + ++ + F
Sbjct: 123 --WNQRQSEQVEKNKIN-NRIADKAF 145
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 36.4 bits (83), Expect = 0.001
Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 29/106 (27%)
Query: 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRID------------------- 152
R R + + L +A+ + P RE L +
Sbjct: 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGS 63
Query: 153 --LTEARVQVWFQNRRAKWRKQEKLVSKQPQELFSSPLQSPASPSP 196
+TE RV WF NR RK+E K + S + PS
Sbjct: 64 NLVTEVRVYNWFANR----RKEEAFRQKLAMD----AYSSNSGPSS 101
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 35.0 bits (80), Expect = 0.002
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174
L L+ + P ++A ++L V+ WF+ +A +
Sbjct: 14 LLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQS 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 33.7 bits (77), Expect = 0.008
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 84 QVSPSSPPTLCFSPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELERAF--HKTH-YPD 140
Q++ + + + R +R F+ + LE F + + Y D
Sbjct: 1 QLTQKNKSA--DGLVFNVVTQDMINKSTKPYRGHR--FTKENVRILESWFAKNIENPYLD 56
Query: 141 VFFREELALRIDLTEARVQVWFQNRRAKWR 170
E L L+ +++ W NRR K +
Sbjct: 57 TKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational
analysis, G protein, GAS subunit, A2A adenosine
receptor, cell-penetrating peptides; NMR {Synthetic}
PDB: 2o00_A
Length = 37
Score = 32.3 bits (73), Expect = 0.009
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 157 RVQVWFQNRRAKWRKQ 172
++++WFQNRR KW+K+
Sbjct: 2 QIKIWFQNRRMKWKKR 17
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 36.2 bits (83), Expect = 0.009
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 27 AYSISGLLNTPNQNGDPLLSGFTLPISQMPPVIVTTLQQSCSANFQPVMKYNPSTSPQVS 86
AYS + +P S P S + + S ++ P TSP S
Sbjct: 1555 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYS 1613
Query: 87 PSSPPTLCFSPTPTPESPPTQQT 109
P+SP SP+ +P SP T
Sbjct: 1614 PTSPSYSPTSPSYSPTSPSYSPT 1636
Score = 32.8 bits (74), Expect = 0.11
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 68 SANFQPVM-KYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQTGKRKQR 115
S ++ P Y+P TSP SP+SP SP +P+ + R
Sbjct: 1686 SPSYSPTSPNYSP-TSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR 1733
Score = 30.8 bits (69), Expect = 0.48
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESP---PTQQTGKRKQRRY 117
S ++ P TSP SP+SP SP +P SP P Q K +
Sbjct: 1679 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENEN 1731
Score = 30.8 bits (69), Expect = 0.50
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 65 QSCSANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQTGK 111
S N+ P TSP SP SP +SP + + +
Sbjct: 1690 SPTSPNYSPTSPSYSPTSPGYSPGSPA---YSPKQDEQKHNENENSR 1733
Score = 30.1 bits (67), Expect = 0.87
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESP 104
S + P TSP SP+SP SP+ +P SP
Sbjct: 1658 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1694
Score = 28.9 bits (64), Expect = 1.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPP 105
S F P TSP SP+SP SP+ +P SP
Sbjct: 1539 SPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1576
Score = 28.9 bits (64), Expect = 2.2
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESP---PTQQTGKRKQRRYRTTFSNF 124
S ++ P TSP SP+SP SP+ +P SP PT + Y T ++
Sbjct: 1581 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1640
Query: 125 Q 125
Sbjct: 1641 S 1641
Score = 28.5 bits (63), Expect = 2.4
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 14 HNIRLPIVTVPNNAYSISGLLNTPNQNGDPLLSGFTLPISQMPPVIVTTLQQSCSANFQP 73
++ P + + +YS + +P S P S + + S ++ P
Sbjct: 1584 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSP 1642
Query: 74 VMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQT 109
TSP SP+SP SP+ +P SP T
Sbjct: 1643 TSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT 1678
Score = 28.5 bits (63), Expect = 2.6
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 27 AYSISGLLNTPNQNGDPLLSGFTLPISQMPPVIVTTLQQSCSANFQPV-MKYNPS----- 80
+YS + +P S P S + S ++ P Y+P+
Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1634
Query: 81 -TSPQVSPSSPPTLCFSPTPTPESPPTQQT 109
TSP SP+SP SP+ +P SP T
Sbjct: 1635 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1664
Score = 28.1 bits (62), Expect = 3.6
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 65 QSCSANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQT 109
S ++ P TSP SP+SP SP +P SP T
Sbjct: 1662 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT 1706
Score = 27.0 bits (59), Expect = 7.3
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPP 105
+ P +SP SP+SP SP +P SP
Sbjct: 1525 AYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPS 1562
Score = 27.0 bits (59), Expect = 7.6
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 36 TPNQNGDPLLSGFTL--PISQMPPVIVTTLQQSCSANFQPV------MKYNPSTSPQVSP 87
TP N L++ P++ + + + F +P + +P
Sbjct: 1471 TPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAP 1530
Query: 88 SSPPTLCFSPTPTPESPPTQQTG 110
+SP SP +P SP T
Sbjct: 1531 TSPGFGVSSPGFSPTSPTYSPTS 1553
Score = 27.0 bits (59), Expect = 7.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 77 YNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQTG 110
++P TSP SP+SP +SPT SP +
Sbjct: 1542 FSP-TSPTYSPTSPA---YSPTSPSYSPTSPSYS 1571
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger
homeobox family protein, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: a.4.1.1
Length = 80
Score = 33.0 bits (75), Expect = 0.012
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 101 PESPPTQQTGKRKQRRYRTTFSNFQLEEL----ERAFHKTHYPDVFFREELALRIDLTEA 156
S + + G ++R+RT F+ Q E + ER + D + +
Sbjct: 4 GSSGSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQ 63
Query: 157 RVQVWFQNRR 166
++VW N +
Sbjct: 64 VLKVWLHNNK 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 32.1 bits (73), Expect = 0.035
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 134 HKTH-YPDVFFREELALRIDLTEARVQVWFQN-RRAKWRKQEKLVSKQPQELFSSPLQSP 191
H+ + YP + L+ + L+ +V WF N RR + K P + S +
Sbjct: 27 HRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAK 86
Query: 192 AS 193
S
Sbjct: 87 IS 88
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 31.1 bits (71), Expect = 0.042
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 134 HKTH-YPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
+ + Y D E L L+ +++ W NRR K +
Sbjct: 20 NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.043
Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 51/176 (28%)
Query: 96 SPTPTPESPPTQQTGKRKQRRYRTTF-----SNFQLEELERAFHKTHYPDVFFREELALR 150
P + + + F ++ EEL R ++T++ V +L
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-RDLYQTYHVLV---GDL--- 187
Query: 151 IDLTEARVQVWFQNRRAKWRKQEKLVS--KQPQELFSSP------LQSPASPSPDLNVIS 202
I + + +L+ +++F+ L++P++ ++S
Sbjct: 188 IKFSAETLS--------------ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 203 VPAASPV------PHFSPPVCSTSSFYLGMEWGGFMSY-QGASTPQPQKESSDIIS 251
+P + P+ H+ LG G SY +GA+ S +++
Sbjct: 234 IPISCPLIGVIQLAHYV-VTAKL----LGFTPGELRSYLKGATG-----HSQGLVT 279
Score = 27.3 bits (60), Expect = 7.1
Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 66/215 (30%)
Query: 3 LKPLLEVTTDLHNIRLPIVTVPNNAYS----ISGLLNTPNQNGDP--LLSGFTLPISQMP 56
+ L++ + + + + ++ I L P+ D LLS +PIS P
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS---IPIS-CP 239
Query: 57 PVIVTTLQQSCSANFQPVMKYNPST-SPQVSPSS------PPTLCFSPTPTPESPPTQQT 109
++ +Q + ++ + P + ++ + + T + ES
Sbjct: 240 --LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES------ 291
Query: 110 GKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKW 169
F + + F I + R + N
Sbjct: 292 -----------FFVSVRKAITVLFF----------------IGV---RCYEAYPN----- 316
Query: 170 RKQEKLVSKQPQELFSSPLQSPASPSPDLNVISVP 204
S P L S + PSP L++ ++
Sbjct: 317 ------TSLPPSILEDSLENNEGVPSPMLSISNLT 345
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 32.7 bits (74), Expect = 0.13
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQT 109
S ++ P TSP SP+SP SP+ +P SP T
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1714
Score = 31.2 bits (70), Expect = 0.34
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQT 109
S ++ TSP SP+SP SP+ +P SP T
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1644
Score = 31.2 bits (70), Expect = 0.41
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 65 QSCSANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESP 104
S ++ P TSP SP+SP SP+ +P SP
Sbjct: 1698 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1737
Score = 29.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 68 SANFQPV-MKYNPSTSPQVSPSSPPTLCFSPTPTPESP 104
S ++ P Y+P TSP SP+SP SP+ +P SP
Sbjct: 1617 SPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP 1653
Score = 29.7 bits (66), Expect = 1.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 67 CSANFQPV-MKYNPSTSPQVSPSSPPTLCFSPTPTPESP 104
S ++ P Y+P TSP SP+SP SP+ +P SP
Sbjct: 1581 TSPSYSPTSPSYSP-TSPSYSPTSPSYSATSPSYSPTSP 1618
Score = 29.3 bits (65), Expect = 1.5
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 67 CSANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQT 109
S + Y P +SP SP+SP SP+ +P SP T
Sbjct: 1561 SSPGYSTSPAYMP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1602
Score = 28.9 bits (64), Expect = 2.2
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESP---PTQQTGKRKQRRYRTT 120
S ++ P TSP SP+SP SP+ + SP PT + Y T
Sbjct: 1575 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPT 1630
Score = 28.9 bits (64), Expect = 2.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESP 104
S ++ P TSP SP+SP SP+ +P SP
Sbjct: 1610 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 28.5 bits (63), Expect = 2.7
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 76 KYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQT 109
Y+P TSP SP+SP SP+ +P SP T
Sbjct: 1668 SYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700
Score = 28.1 bits (62), Expect = 3.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 68 SANFQPV-MKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQ 108
S ++ P Y+P TSP SP+SP +SPT SP +
Sbjct: 1631 SPSYSPTSPSYSP-TSPSYSPTSPS---YSPTSPSYSPTSPS 1668
Score = 27.7 bits (61), Expect = 4.5
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 31 SGLLNTPNQNGDPLLSGFTLPISQMPPVIVTTLQQSCSANFQPVMKYNPSTSPQVSPSSP 90
G LL + P + + S + +SP +SP
Sbjct: 1511 GGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSP-GYSTSP 1569
Query: 91 PTLCFSPTPTPESPPTQQT 109
+ SP+ +P SP T
Sbjct: 1570 AYMPSSPSYSPTSPSYSPT 1588
Score = 27.3 bits (60), Expect = 6.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESP 104
S ++ P TSP SP+SP SP+ +P SP
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688
Score = 27.0 bits (59), Expect = 7.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 68 SANFQPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQTG 110
S ++ P +TSP SP+SP SP+ +P SP T
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 31.5 bits (72), Expect = 0.19
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 72 QPVMKYNPSTSPQVSPSSPPTLCFSPTPTPESPPTQQTGKRKQRRYRTTFSNFQLEELER 131
+ K + P + P P+ P ++ +R F+ Q++E +
Sbjct: 6 KKEKKKKSKKKAEEEGGDAP----AAPPAPKPPSQKRRAQRSGSNVFAMFTQHQVQEFKE 61
Query: 132 AF 133
AF
Sbjct: 62 AF 63
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 29.8 bits (67), Expect = 0.20
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 134 HKTH-YPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLVSKQPQELFSSPLQSPA 192
+ + Y D E L L+ +++ W RRAK + EL P
Sbjct: 24 NIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI-----APELADLLSGEPL 78
Query: 193 SPSPD 197
+ +
Sbjct: 79 AKKKE 83
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 30.8 bits (69), Expect = 0.39
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 5/110 (4%)
Query: 39 QNGDPLLSGFTLPISQMPPVIVTTLQQSCSANFQPVMKYNPSTSPQVSPSSPPTLCFSPT 98
+ D L G I + + + + S+ P S
Sbjct: 9 KASDGNLLGDPGRIPLSKRESIKWQRPRFTRQ----ALMRCCLIKWILSSAAPQGSDSSD 64
Query: 99 PTPESPPTQQTGKR-KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREEL 147
E + + Q + +T F+ +L+ L R F + +
Sbjct: 65 SELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTF 114
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein,
protein/DNA complex; HET: DNA; 2.35A {Homo sapiens}
SCOP: a.4.1.1 PDB: 1lfu_P
Length = 87
Score = 29.0 bits (65), Expect = 0.40
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 134 HKTH-YPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLVSKQPQELFSSPLQSPA 192
H ++ YP +EELA + +T ++V WF N+R +++K ++ + +
Sbjct: 23 HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTAT 82
Query: 193 SPSP 196
+ S
Sbjct: 83 NVSA 86
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 28.6 bits (63), Expect = 0.45
Identities = 7/50 (14%), Positives = 21/50 (42%)
Query: 125 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174
+ L+ + P+ ++++ + L + V+ WF+ R+ +
Sbjct: 16 HMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNSR 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.5 bits (70), Expect = 0.67
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 114 QRRYRTTFSNFQLEELERAF 133
QR +R T S E LE+ F
Sbjct: 359 QRWHRETESPEMKEWLEKNF 378
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 30.3 bits (67), Expect = 0.73
Identities = 14/69 (20%), Positives = 29/69 (42%)
Query: 126 LEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKLVSKQPQELFS 185
+ + TH P ++L TE ++++ QN + +E ++ QP ++ +
Sbjct: 416 ICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMA 475
Query: 186 SPLQSPASP 194
P PA
Sbjct: 476 EPSNEPAPA 484
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase;
3.00A {Giardia intestinalis} PDB: 2ffl_A
Length = 756
Score = 29.5 bits (66), Expect = 1.2
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 75 MKYNPSTSPQV--SPSSPPTLCFSPTPTPESP 104
M +N T P+ +P TL F P +P SP
Sbjct: 92 MPHNEYTFPRFISNPPQFATLAFLPLLSPTSP 123
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding,
transcription, nucleus, phosphoprotein, DNA bindi
protein; 1.95A {Homo sapiens}
Length = 67
Score = 27.3 bits (61), Expect = 1.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 134 HKTH-YPDVFFREELALRIDLTEARVQVWFQN-RRAKWRKQEK 174
H TH YP +++LA LT +V WF N RR +
Sbjct: 20 HLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian,
protein-DNA complex, HOX hexapeptide, TALE homeodomain,
homeodomain interaction; 1.90A {Homo sapiens} SCOP:
a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Length = 73
Score = 26.6 bits (59), Expect = 2.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 134 HKTH-YPDVFFREELALRIDLTEARVQVWFQN-RRAKWRKQEK 174
H ++ YP +EELA + +T ++V WF N R + K
Sbjct: 23 HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 28.6 bits (65), Expect = 2.6
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 114 QRRYRTTFSNFQLEELER 131
QR+ T S E E
Sbjct: 409 QRKMSQTESEQMKERYEG 426
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 28.2 bits (64), Expect = 2.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 114 QRRYRTTFSNFQLEELER 131
+RRYR T S++ E++E+
Sbjct: 400 ERRYRETSSDYIREQMEK 417
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 27.9 bits (61), Expect = 2.9
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 62 TLQQSCSANFQPVMKYNPSTSPQVSPSSPPTLCFSPTP--TPESPPTQQTGK 111
+ Q N P+ P+T P S+ PT+ +PTP T +
Sbjct: 165 FVIQPGEINSAPIATATPTTKPTAFASTMPTVTLTPTPTATTTTTIPTAVPT 216
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus
musculus} SCOP: a.4.1.1
Length = 64
Score = 25.7 bits (57), Expect = 3.2
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 134 HKTH-YPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
H ++ YP +EELA + +T ++V WF N+R +++K
Sbjct: 25 HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 27.2 bits (61), Expect = 3.5
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 103 SPPTQQTGKRKQRRYRTTFSNFQLEELERAF 133
T + +R Q++ R + Q +E+ AF
Sbjct: 4 KAKTVVSARRDQKKGRVGLTEEQKQEIREAF 34
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 73
Score = 25.4 bits (56), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 134 HKTH-YPDVFFREELALRIDLTEARVQVWFQN-RRAKWR 170
H H YP ++++A + +LT +V WF N RR +
Sbjct: 29 HIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 67
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein,
X-linked TGF(beta) induced transcription factor 2-like
protein, TGIF-like on the X; NMR {Homo sapiens}
Length = 83
Score = 25.9 bits (57), Expect = 5.0
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 134 HKTH-YPDVFFREELALRIDLTEARVQVWFQN-RRAKWRKQEKLVSKQP 180
H+ YP ++ L+ + +L+ ++ WF N RR + P
Sbjct: 29 HRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 5.2
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 72 QPVMKYNPSTSPQVSPSSPPTLCFSPT 98
Q + K S + S P L T
Sbjct: 20 QALKKLQASLKL-YADDSAPALAIKAT 45
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 27.1 bits (61), Expect = 6.0
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 114 QRRYRTTFSNFQLEELER 131
QRRY + S + + L +
Sbjct: 70 QRRYVESLSAYARQFLGQ 87
>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
hydrolase, transferase; 1.77A {Bifidobacterium
adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
2gdu_A*
Length = 504
Score = 27.1 bits (60), Expect = 6.5
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 99 PTPESPPTQQTGKRKQRRYRTTFSNFQ 125
P P P T K R +F+ Q
Sbjct: 134 PRPGLPFTHYKFAGKTRLVWVSFTPQQ 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.391
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,830,249
Number of extensions: 214232
Number of successful extensions: 699
Number of sequences better than 10.0: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 135
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.8 bits)