RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2704
(256 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 108 bits (271), Expect = 3e-31
Identities = 41/67 (61%), Positives = 54/67 (80%)
Query: 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174
+R RT+F+ Q+E LE+ F +THYPDVF RE LA +IDL EAR+QVWF NRRAKWR++EK
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 175 LVSKQPQ 181
L +++ Q
Sbjct: 62 LRNQRRQ 68
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 106 bits (267), Expect = 1e-30
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 103 SPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWF 162
+P R R+ R ++ Q ELE+ F Y R E+A ++LTE +V++WF
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 61
Query: 163 QNRRAKWRKQEKLVSK 178
QNRR K +K K +K
Sbjct: 62 QNRRMKMKKINKDRAK 77
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 99 bits (249), Expect = 5e-28
Identities = 46/65 (70%), Positives = 53/65 (81%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
KQRR RTTFS QL+ELERAF +T YPD++ REELA R +LTEAR+QVWFQNRRA+ RKQ
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60
Query: 173 EKLVS 177
VS
Sbjct: 61 HTSVS 65
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 99.1 bits (247), Expect = 9e-28
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
K R RT + QL L + PD +E+L L+ ++VWFQN+R K +K+
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 173 EKLV 176
++
Sbjct: 62 SIMM 65
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 98.7 bits (246), Expect = 1e-27
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
R T++ +Q ELE+ FH Y R E+A + LTE ++++WFQNRR KW+K+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 97.3 bits (242), Expect = 5e-27
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
R+ R +S QL ELER + + R +++ L+E ++ +WFQNRR K +K
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 96.6 bits (240), Expect = 2e-26
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 101 PESPPTQQTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQV 160
P++ + G RT F+ QL ELE+ FH Y R E+A ++L E +V++
Sbjct: 14 PKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 73
Query: 161 WFQNRRAKWRKQEK 174
WFQNRR K +K+E+
Sbjct: 74 WFQNRRMKQKKRER 87
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 95.8 bits (238), Expect = 2e-26
Identities = 36/60 (60%), Positives = 48/60 (80%)
Query: 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173
QRR RT F++ QL++LE F + YPD+ REE+A+ +LTEARV+VWF+NRRAKWRK+E
Sbjct: 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 95.3 bits (237), Expect = 2e-26
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
+ + FSN Q ELE+ F Y R+ LA + L+E +V+ WFQNRRAKWR+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 94.4 bits (234), Expect = 1e-25
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRI---------------DLTEARVQ 159
R R T+ L +E F++ YPD REE+A +T +V
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 160 VWFQNRRAKWRKQEKLVSKQ 179
WF NRR + +++ + +
Sbjct: 61 NWFANRRKEIKRRANIAAIL 80
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 92.3 bits (229), Expect = 4e-25
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 116 RYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
RYRT F+ QL LE+ F+K +Y R ELA +++L E+ ++VWFQNRR K ++Q
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 91.5 bits (227), Expect = 7e-25
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
R+ RT F+ QL LER F + Y + R E + + LTE +V++WFQNRRAK ++
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 91.5 bits (227), Expect = 1e-24
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 114 QRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173
+R+ R FS Q+ ELER F + Y RE LA I LT +V++WFQN R K ++Q
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 174 KLVSKQ 179
K + Q
Sbjct: 62 KDKAAQ 67
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 91.2 bits (226), Expect = 1e-24
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 115 RRYRTTFSNFQLEELERAFHKT-HYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173
T + Q+E LE F+K +PD +A LTE + Q WF+ R A+WR+ E
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 174 KLVSK 178
L S+
Sbjct: 62 GLPSE 66
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 90.0 bits (223), Expect = 3e-24
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 116 RYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQE 173
+ RTT S + LER F + P +A ++L + V+VWF NRR + ++ +
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 90.1 bits (223), Expect = 3e-24
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 108 QTGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRA 167
+T + ++R RT+ N LE F K P + +A ++ L + V+VWF NRR
Sbjct: 2 ETLVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQ 61
Query: 168 KWRKQ 172
K ++
Sbjct: 62 KGKRS 66
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 88.8 bits (220), Expect = 9e-24
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 115 RRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEK 174
RR RTTF++ Q+ ELE+ F + Y +L+ ++ L A+V++WF+NRR + + Q
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 87.0 bits (215), Expect = 6e-23
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 112 RKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
K+R+ R F+ Q ELER F + Y RE LA I LT +V++WFQN R K ++
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66
Query: 172 QEK 174
+
Sbjct: 67 AQN 69
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 86.1 bits (213), Expect = 7e-23
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 116 RYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
R RT FS+ QL L+R F++ Y R++L+ + L EA++++WFQN RAK
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 83.1 bits (205), Expect = 2e-21
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 115 RRYRTTFSNFQLEELERAF---HKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
RR R F+ E L F YP +EELA + +T ++V WF N+R +++K
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 172 QEK 174
Sbjct: 62 NIG 64
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 81.1 bits (200), Expect = 6e-21
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWR 170
+++ S LE+ F + + +EE+A + +T +V+VWF N+R + +
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 77.1 bits (189), Expect = 4e-19
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 113 KQRRYRTTFSNFQLEELERAFHKT-HYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
R RT S L L+ H YPD L+ ++DL + + +FQN+R +
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65
Query: 172 QEK 174
Sbjct: 66 SGP 68
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 76.1 bits (187), Expect = 5e-19
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRR 166
R F++ Q L F + P + ++ ++ L + V +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 75.7 bits (186), Expect = 7e-19
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQ 172
RT+ LE++F + P +A ++++ + ++VWF NRR K ++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 75.2 bits (184), Expect = 2e-18
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 21/78 (26%)
Query: 118 RTTFSNFQLEELERAFHKTHYPDVFFREELALRID---------------------LTEA 156
R + + L +A+ + P RE L + +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 157 RVQVWFQNRRAKWRKQEK 174
RV WF NRR + + K
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 74.4 bits (183), Expect = 2e-18
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 125 QLEELERAF-HKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
LE+ F T +PD E L+ ++D +Q WF+ RR + +
Sbjct: 4 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 73.7 bits (181), Expect = 5e-18
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 115 RRYRTTFSNFQLEELERAFHK---THYPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
R +R F+ + LE F K Y D E L L+ +++ W NRR K +
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 74.3 bits (182), Expect = 5e-18
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 103 SPPTQQTGKRKQRRYRTTFSNFQLEELERAFHK----THYPDVFFREELALRIDLTEARV 158
S + +R+RT F+ Q E++ + D E+ + +
Sbjct: 6 SGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVL 65
Query: 159 QVWFQNRRAKWRKQ 172
++W N +
Sbjct: 66 KIWMHNNKNSGPSS 79
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 71.0 bits (174), Expect = 5e-17
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 110 GKRKQRRYRTTFSNFQLEELERAF-HKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
G + + + LE+ F T YPD + L+ ++D + ++Q WF++RR +
Sbjct: 1 GIKDSPVNKVE----PNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 56
Query: 169 WR 170
+
Sbjct: 57 DK 58
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 70.1 bits (172), Expect = 1e-16
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 115 RRYRTTFSNFQLEELERAFHKTH---YPDVFFREELALRIDLTEARVQVWFQNRRAKWRK 171
+ R + + YP ++++A + +LT +V WF N R + +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 65.5 bits (159), Expect = 9e-15
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
T ++ + + + QL L+ +F + L + LT + WF ++
Sbjct: 4 TPQKFKEK-----TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 58
Query: 169 WRKQEK 174
+E+
Sbjct: 59 KALKEE 64
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 59.4 bits (143), Expect = 1e-12
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 109 TGKRKQRRYRTTFSNFQLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAK 168
+G +R + QL L+ F + + ++L L + WF + R
Sbjct: 3 SGSSGKR-----KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYA 57
Query: 169 WRKQEKLVSKQPQELFSS 186
+ + + SS
Sbjct: 58 LKHGQLKWFRDNASGPSS 75
>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual
arrestin [TaxId: 9913]}
Length = 173
Score = 26.6 bits (59), Expect = 2.0
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 147 LALRIDLTEARVQVW--FQNRRAKWRKQEKLVSKQPQELFSSPLQSPASPSPDLNVISVP 204
L+ R DL ++VQV+ A R QE L+ K + L P +V+ P
Sbjct: 68 LSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPC--SVMLQP 125
Query: 205 AAS 207
A
Sbjct: 126 APQ 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.391
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 958,476
Number of extensions: 45066
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 38
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.0 bits)